gentoo resync : 15.06.2021

5 files changed, 263 insertions, 6 deletions

diff --git a/sci-visualization/paraview/Manifest b/sci-visualization/paraview/Manifest
index 94509499f354..92bae553b142 100644
--- a/sci-visualization/paraview/Manifest
+++ b/sci-visualization/paraview/Manifest
@@ -3,9 +3,11 @@ AUX paraview-5.3.0-fix_buildsystem.patch 797 BLAKE2B f77c72f34c13eae42a4da281f95
 AUX paraview-5.5.0-allow_custom_build_type.patch 1036 BLAKE2B ff00093034196935e9075c5751f8a64027da009679de5c3f5b941681e65df9b91b0a05a3f0201a873313d859f029596739b1c5d705a1c35ae3cc83251312774e SHA512 0c79315d28b98d4cf45bfd48198dbb3315ebf6ffbd05e9720b35e7bdea05bd98c086dbb02cd7ac6d9580f504c7d29f498244d2b30d9e2932e881261a78b020c7
 AUX paraview-5.8.0-w-vtk-8.2.0-qt-5.15.patch 1185 BLAKE2B 9573a94af926615a3e6e8e043ea5bbbbf7a7946e33bce30c9fe6475de074142043463c345cf6caed09a60a63c241cac19ca2a54383b41752441b72e0bf5d9f17 SHA512 3552ae966be577840187590c651abc98e41047cbac6b679a17779b83b37c8d1ddd1a36a6ddd6dffb01b66138d2fc8a1bd335afb3ee488d2faa60c7ec1e4323e0
 AUX paraview-5.8.1-find-xmlpatterns.patch 1343 BLAKE2B 6786f27d4a3d5539f0265d1b3426b16063e795fca57d51ac3d232e5258d4d3db1b765379607ba143a422fe8f49b12354edc51fd4f4700a709e2e4aa362e75b8c SHA512 08aa76bdb1251638d52a2871116f507cc492cf03895a1950e05a56048571edb932efebe0f7704d56cd61afadee8f1f9e7003bc02825df83550944f84265b1658
-AUX paraview-5.9.0-gcc11-include.patch 497 BLAKE2B 9af7711767f1b241ea965968b6fd31600aa1a094a36758712ee0319e51cf4f7998ade5a756498950f3dd3077e019dfbe261de61e1f18a8a7c7a600459179e2d4 SHA512 4bbaca632abdc5f5fb1b9d5366e65245c0f40d2db73b4c8bb61460f367517a2f5b94a81db32aab96288b44bb298f7d89d874e779071a579f5026a9e4864baf62
+AUX paraview-5.9.0-gcc11-include.patch 1045 BLAKE2B 2b6b709cf081391f6b3c9c214ce7da33a8c83f187b00e803a9df651cbf6aac8a7dc7ba080f073fcbfba5266369d2f556cc4b21fe6d3ad830bd24fb3a0908aad0 SHA512 f3af80d8c59edb1625207b447e1c6975c67e8d988e9af3592597e5a2b4c39d4e6f0c6786abc0e31a6b30fa77124e9368802d5b9e4bab5453c5ed82c5b9391dbb
 DIST ParaView-v5.8.1.tar.xz 49822084 BLAKE2B 1b99392a85c19fdc02f8f9f0f055fb7efd8a0b17eedfd84005d1af9b170c34ec4eedb25700f91c3a2241ee80e271fe1e744e3a729b7726deb8f9c7a9fd2e4191 SHA512 94861c01da2f98c47e7453d072a4de34a7f52f5df280a8745b44d58d8d6a1dba42a15d0bac31895bbe25f23d993d4d356e5af1f8415137e289afd60570070248
 DIST ParaView-v5.9.0.tar.xz 62784788 BLAKE2B f07bfce50304b2bfba0de4ba3127d686cf4c32633f8c707fbb2d93c19685f7e8a119ba211e27c29b986ca5b22afab4f57c273077a1c0a7ab0abefa55c8874e28 SHA512 44d93b49449262aa3f068aa990419415c3197916a002555d914efc407ed7ccd57b15b829f0fe711afee780e5e63fb1bd072175fc382f3afd36daecc541c382d5
-EBUILD paraview-5.8.1.ebuild 6363 BLAKE2B d1682ea682bfe732b3442cc2495dfb660fc8d5603c50b5c864b7629dd918bb77d9a8dcdd1dd14a7e8bc3047d345f6fe1b71365b735a6e7093c93493dd67c9aeb SHA512 4bef374b2f19f375d21f2d548c941cd14502311e395e9dd80d050068ea25cd3d1d2d41abf4e74bcbbe34ccc55d01b81197ab9b7dc325d185a54ac0e019501fb4
-EBUILD paraview-5.9.0.ebuild 5853 BLAKE2B 83562d286dbb019a1c86d584f8a5997848e0d3943be23b905e7ef21354f6fe02b3a15b4b5fcb7b7b23032ced2bcf5f0dd2b52ce79b0f508d0554b0bac232646f SHA512 2aeb8501d4b707ab896139b8fbef344f5ba78be3bea0f84a5c0a6241cefc199228d3d31cf15fb6a4a0cc0e034289ff795c84d8b60ed036ac3a8bb26fb77e4aac
+DIST ParaView-v5.9.1.tar.xz 62835572 BLAKE2B ba15771de9d972de533627ce3e2c74fd5f25df08884680ea6f1ceea0adb513c024f58e4436691bf17b11728f8e1c09f6ce1d55d9875729169dbc5f4b38c05de8 SHA512 d424e22d962f21c32971ca0001c10c266a1768713a3d0ae9d4c73dc83260c4661326cfbed7773845cf31dedc0474096ed9d6eb8a42ab7677cdde95f9f6abd2f2
+EBUILD paraview-5.8.1.ebuild 6365 BLAKE2B 429cad83359829027fd1c9744c027ff1d40de119f4deacee26c17d31db71ef4f9b6ff1edfd7c02de5b7e005e4e8641bb85adad07f204d37e21f4a71176fc4398 SHA512 da8f39e3998bcc96dbef127bf740a1057924202080410e9c89dd65fd47612a79e9df1a0d42ff14a555faef92e1b7b4462a79b24a516abbccc81ddfa4a50f495c
+EBUILD paraview-5.9.0.ebuild 5855 BLAKE2B daa0b325a8dd965966657f670dac51f499128f25d26f1611002c0048208ace6e33a9bf1c53c26de30d4fe6dd20f318bf2b4d37698703b2efa10a7c7ce10fe2ad SHA512 ef64bce5e9d07d5a25326b45abd7b838668800ae21e773d8c3c197bc26088787b0f0d78d7c39a5f7b2589ddcd3841096c26c0c6246ad9b9399df6a52b2d1a59f
+EBUILD paraview-5.9.1.ebuild 5855 BLAKE2B daa0b325a8dd965966657f670dac51f499128f25d26f1611002c0048208ace6e33a9bf1c53c26de30d4fe6dd20f318bf2b4d37698703b2efa10a7c7ce10fe2ad SHA512 ef64bce5e9d07d5a25326b45abd7b838668800ae21e773d8c3c197bc26088787b0f0d78d7c39a5f7b2589ddcd3841096c26c0c6246ad9b9399df6a52b2d1a59f
 MISC metadata.xml 873 BLAKE2B 3f48aa66e19a19e8de7959d58248e7d4d7b6ca0f9dd98b869088f15bfc483dec486c89bdd448368eb0b385735ca8cfb3462a86e93fecb13383366ced4ead4ebd SHA512 871830a5157bc1f8803cf4dbd4797a58bd87d6338a3eaa21662a2e789412bf746c30f817a485a26b4b14fa578aa15b391efe76c920db7b1c2a2f74f9bf3eceb2
diff --git a/sci-visualization/paraview/files/paraview-5.9.0-gcc11-include.patch b/sci-visualization/paraview/files/paraview-5.9.0-gcc11-include.patch
index b9fad8c094fe..d5850073fb94 100644
--- a/sci-visualization/paraview/files/paraview-5.9.0-gcc11-include.patch
+++ b/sci-visualization/paraview/files/paraview-5.9.0-gcc11-include.patch
@@ -1,3 +1,4 @@
+https://bugs.gentoo.org/789573
 --- a/VTK/Common/Core/vtkGenericDataArrayLookupHelper.h
 +++ b/VTK/Common/Core/vtkGenericDataArrayLookupHelper.h
 @@ -25,6 +25,7 @@
@@ -18,3 +19,23 @@
  #include <set>
  #include <vector>
  
+--- a/VTK/Rendering/Core/vtkColorTransferFunction.cxx
++++ b/VTK/Rendering/Core/vtkColorTransferFunction.cxx
+@@ -21,6 +21,7 @@
+ #include <algorithm>
+ #include <cmath>
+ #include <iterator>
++#include <limits>
+ #include <set>
+ #include <vector>
+ 
+--- a/VTK/Filters/HyperTree/vtkHyperTreeGridThreshold.cxx
++++ b/VTK/Filters/HyperTree/vtkHyperTreeGridThreshold.cxx
+@@ -27,6 +27,7 @@
+ #include "vtkHyperTreeGridNonOrientedCursor.h"
+ 
+ #include <cmath>
++#include <limits>
+ 
+ vtkStandardNewMacro(vtkHyperTreeGridThreshold);
+ 
diff --git a/sci-visualization/paraview/paraview-5.8.1.ebuild b/sci-visualization/paraview/paraview-5.8.1.ebuild
index 4cdb8153c8ce..6182669ef170 100644
--- a/sci-visualization/paraview/paraview-5.8.1.ebuild
+++ b/sci-visualization/paraview/paraview-5.8.1.ebuild
@@ -1,9 +1,9 @@
-# Copyright 1999-2020 Gentoo Authors
+# Copyright 1999-2021 Gentoo Authors
 # Distributed under the terms of the GNU General Public License v2
 
 EAPI=7
 
-PYTHON_COMPAT=( python3_{7,8} )
+PYTHON_COMPAT=( python3_{7,8,9} )
 inherit cmake desktop python-single-r1 qmake-utils toolchain-funcs xdg-utils
 
 MAIN_PV=$(ver_cut 0-1)
diff --git a/sci-visualization/paraview/paraview-5.9.0.ebuild b/sci-visualization/paraview/paraview-5.9.0.ebuild
index f91083500a23..48a71695238e 100644
--- a/sci-visualization/paraview/paraview-5.9.0.ebuild
+++ b/sci-visualization/paraview/paraview-5.9.0.ebuild
@@ -3,7 +3,7 @@
 
 EAPI=7
 
-PYTHON_COMPAT=( python3_{7,8} )
+PYTHON_COMPAT=( python3_{7,8,9} )
 inherit cmake desktop python-single-r1 qmake-utils toolchain-funcs xdg-utils
 
 MAIN_PV=$(ver_cut 0-1)
diff --git a/sci-visualization/paraview/paraview-5.9.1.ebuild b/sci-visualization/paraview/paraview-5.9.1.ebuild
new file mode 100644
index 000000000000..48a71695238e
--- /dev/null
+++ b/sci-visualization/paraview/paraview-5.9.1.ebuild
@@ -0,0 +1,234 @@
+# Copyright 1999-2021 Gentoo Authors
+# Distributed under the terms of the GNU General Public License v2
+
+EAPI=7
+
+PYTHON_COMPAT=( python3_{7,8,9} )
+inherit cmake desktop python-single-r1 qmake-utils toolchain-funcs xdg-utils
+
+MAIN_PV=$(ver_cut 0-1)
+MAJOR_PV=$(ver_cut 1-2)
+MY_P="ParaView-v${PV}"
+
+DESCRIPTION="Powerful scientific data visualization application"
+HOMEPAGE="https://www.paraview.org"
+SRC_URI="https://www.paraview.org/files/v${MAJOR_PV}/${MY_P}.tar.xz"
+
+LICENSE="paraview GPL-2"
+SLOT="0"
+KEYWORDS="~amd64 ~x86"
+IUSE="boost cg doc examples ffmpeg mpi mysql nvcontrol openmp offscreen plugins python +qt5 +sqlite test tk +webengine"
+
+RESTRICT="mirror test"
+
+# "vtksqlite, needed by vtkIOSQL" and "vtkIOSQL, needed by vtkIOMySQL"
+REQUIRED_USE="
+	python? ( mpi ${PYTHON_REQUIRED_USE} )
+	mysql? ( sqlite )
+	webengine? ( qt5 )
+	qt5? ( sqlite )
+	?? ( offscreen qt5 )"
+
+# TODO: Verify that these two are not needed any more for the catalyst
+# module:
+#  - dev-python/PyQt5
+#  - dev-qt/qtgui:5[-gles2-only]
+RDEPEND="
+	app-arch/lz4
+	dev-libs/expat
+	dev-libs/jsoncpp:=
+	dev-libs/libxml2:2
+	dev-libs/protobuf:=
+	dev-libs/pugixml
+	media-libs/freetype
+	media-libs/glew:0
+	media-libs/libpng:0
+	media-libs/libtheora
+	media-libs/tiff:0=
+	sci-libs/cgnslib
+	sci-libs/hdf5:=[mpi=]
+	>=sci-libs/netcdf-4.2[hdf5]
+	>=sci-libs/netcdf-cxx-4.2:3
+	sys-libs/zlib
+	virtual/glu
+	virtual/jpeg:0
+	x11-libs/libX11
+	x11-libs/libXext
+	x11-libs/libXmu
+	x11-libs/libXt
+	ffmpeg? ( media-video/ffmpeg )
+	mpi? ( virtual/mpi[cxx,romio] )
+	mysql? ( dev-db/mysql-connector-c )
+	offscreen? ( >=media-libs/mesa-18.3.6[osmesa] )
+	!offscreen? ( virtual/opengl )
+	python? (
+		${PYTHON_DEPS}
+		$(python_gen_cond_dep '
+			dev-python/constantly[${PYTHON_MULTI_USEDEP}]
+			dev-python/incremental[${PYTHON_MULTI_USEDEP}]
+			dev-python/matplotlib[${PYTHON_MULTI_USEDEP}]
+			dev-python/numpy[${PYTHON_MULTI_USEDEP}]
+			dev-python/pygments[${PYTHON_MULTI_USEDEP}]
+			dev-python/sip[${PYTHON_MULTI_USEDEP}]
+			dev-python/six[${PYTHON_MULTI_USEDEP}]
+			dev-python/twisted[${PYTHON_MULTI_USEDEP}]
+			dev-python/zope-interface[${PYTHON_MULTI_USEDEP}]
+			mpi? ( dev-python/mpi4py )
+			qt5? ( dev-python/PyQt5[opengl,${PYTHON_MULTI_USEDEP}] )
+		')
+	)
+	qt5? (
+		dev-qt/designer:5
+		dev-qt/qtgui:5[-gles2-only]
+		dev-qt/qthelp:5
+		dev-qt/qtopengl:5[-gles2-only]
+		dev-qt/qtsql:5
+		dev-qt/qtsvg:5
+		dev-qt/qttest:5
+		dev-qt/qtx11extras:5
+		dev-qt/qtxmlpatterns:5
+	)
+	sqlite? ( dev-db/sqlite:3 )
+	tk? ( dev-lang/tk:0= )
+	webengine? ( dev-qt/qtwebengine:5[widgets] )"
+DEPEND="${RDEPEND}
+	${PYTHON_DEPS}
+	boost? (
+		$(python_gen_cond_dep '
+			dev-libs/boost[mpi?,${PYTHON_MULTI_USEDEP}]
+		')
+	)
+	doc? ( app-doc/doxygen )"
+
+S="${WORKDIR}/${MY_P}"
+
+PATCHES=(
+	"${FILESDIR}"/${PN}-4.0.1-xdmf-cstring.patch
+	"${FILESDIR}"/${PN}-5.5.0-allow_custom_build_type.patch
+	"${FILESDIR}"/${PN}-5.9.0-gcc11-include.patch
+)
+
+pkg_setup() {
+	[[ ${MERGE_TYPE} != "binary" ]] && use openmp && tc-check-openmp
+	use python && python-single-r1_pkg_setup
+	PVLIBDIR=$(get_libdir)/${PN}-${MAJOR_PV}
+}
+
+src_prepare() {
+	# Bug #661812
+	mkdir -p Plugins/StreamLinesRepresentation/doc || die
+
+	cmake_src_prepare
+
+	# lib64 fixes
+	sed -i \
+		-e "s:/lib/python:/$(get_libdir)/python:g" \
+		VTK/ThirdParty/xdmf3/vtkxdmf3/CMakeLists.txt || die
+	sed -i \
+		-e "s:lib/paraview-:$(get_libdir)/paraview-:g" \
+		Remoting/Application/vtkInitializationHelper.cxx || die
+}
+
+src_configure() {
+	local mycmakeargs=(
+		-DCMAKE_INSTALL_LIBDIR="${PVLIBDIR}"
+		-UBUILD_SHARED_LIBS
+		-DPARAVIEW_BUILD_SHARED_LIBS=ON
+		-DCMAKE_VERBOSE_MAKEFILE=ON
+
+		# boost
+		-DVTK_MODULE_ENABLE_VTK_IOInfovis="$(usex boost YES NO)"
+
+		# doc
+		-DPARAVIEW_BUILD_DEVELOPER_DOCUMENTATION="$(usex doc)"
+
+		# examples
+		-DBUILD_EXAMPLES="$(usex examples)"
+
+		# ffmpeg
+		-DPARAVIEW_ENABLE_FFMPEG="$(usex ffmpeg)"
+		-DVTK_USE_FFMPEG_ENCODER="$(usex ffmpeg)"
+
+		# mpi
+		-DPARAVIEW_USE_MPI="$(usex mpi)"
+		-DXDMF_BUILD_MPI="$(usex mpi)"
+		-DVTK_GROUP_ENABLE_MPI="$(usex mpi YES NO)"
+
+		# mysql
+		-DVTK_MODULE_ENABLE_VTK_IOMySQL="$(usex mysql YES NO)"
+
+		# offscreen
+		-DVTK_OPENGL_HAS_OSMESA="$(usex offscreen)"
+		-DVTK_OPENGL_HAS_OSMESA="$(usex offscreen)"
+
+		# plugins
+		-DPARAVIEW_PLUGINS_DEFAULT="$(usex plugins)"
+
+		# python
+		-DModule_pqPython="$(usex python)"
+		-DPARAVIEW_USE_PYTHON="$(usex python)"
+
+		# qt5
+		-DPARAVIEW_USE_QT="$(usex qt5)"
+		-DModule_pqPython="$(usex qt5 "$(usex python)" "off")"
+		-DVTK_USE_NVCONTROL="$(usex nvcontrol)"
+		-DVTK_GROUP_ENABLE_Qt="$(usex qt5 YES NO)"
+
+		# sqlite
+		-DVTK_MODULE_ENABLE_VTK_sqlite="$(usex sqlite YES NO)"
+
+		# test
+		-DBUILD_TESTING="$(usex test)"
+
+		# tk
+		-DVTK_USE_TK="$(usex tk)"
+		-DVTK_GROUP_ENABLE_Tk="$(usex tk YES NO)"
+
+		# webengine
+		-DPARAVIEW_USE_QTWEBENGINE="$(usex webengine)"
+		-DVTK_GROUP_ENABLE_Web="$(usex webengine YES NO)"
+	)
+
+	if use openmp; then
+		mycmakeargs+=( -DVTK_SMP_IMPLEMENTATION_TYPE=OpenMP )
+	fi
+
+	if use qt5; then
+		mycmakeargs+=(
+			-DOPENGL_gl_LIBRARY="${EPREFIX}"/usr/$(get_libdir)/libGL.so
+			-DOPENGL_glu_LIBRARY="${EPREFIX}"/usr/$(get_libdir)/libGLU.so
+			-DQT_MOC_EXECUTABLE="$(qt5_get_bindir)/moc"
+			-Dqt_xmlpatterns_executable="$(qt5_get_bindir)/xmlpatterns"
+		)
+	fi
+
+	cmake_src_configure
+}
+
+src_install() {
+	cmake_src_install
+
+	# remove wrapper binaries and put the actual executable in place
+	for i in {paraview-config,pvserver,pvdataserver,pvrenderserver,pvbatch,pvpython,paraview}; do
+		if [ -f "${ED}"/usr/lib/"$i" ]; then
+			mv "${ED}"/usr/lib/"$i" "${ED}"/usr/bin/"$i" || die
+		fi
+	done
+
+	# set up the environment
+	echo "LDPATH=${EPREFIX}/usr/${PVLIBDIR}" > "${T}"/40${PN} || die
+	doenvd "${T}"/40${PN}
+
+	newicon "${S}"/Clients/ParaView/pvIcon-96x96.png paraview.png
+	make_desktop_entry paraview "Paraview" paraview
+
+	use python && python_optimize "${D}"/usr/$(get_libdir)/${PN}-${MAJOR_PV}
+}
+
+pkg_postinst() {
+	xdg_icon_cache_update
+}
+
+pkg_postrm() {
+	xdg_icon_cache_update
+}