gentoo resync : 06.08.2019

12 files changed, 4 insertions, 196 deletions

diff --git a/sci-physics/Manifest.gz b/sci-physics/Manifest.gz
index 1e516839373a..8febcca3a63f 100644
--- a/sci-physics/Manifest.gz
+++ b/sci-physics/Manifest.gz
diff --git a/sci-physics/harminv/Manifest b/sci-physics/harminv/Manifest
deleted file mode 100644
index 98b53f4c6021..000000000000
--- a/sci-physics/harminv/Manifest
+++ /dev/null
@@ -1,4 +0,0 @@
-AUX harminv-1.3.1-configure.ac.patch 965 BLAKE2B f5cebe4567fe94dd38d04c380bc4d1cfdfb8c84814ae70eeee6ec7524da9f4c6ec7538109562f0b7518194a357aedffbde14c6e53890a44aafc5c71b0cf1d7b6 SHA512 c177dae71d23df73f09d1754edfcbb464970b6bb987c46f880d3eee288ab69a293b885b85414b519a32323e8c5f83f853d68339eaed2b8d4c5734c5e55a96691
-DIST harminv-1.3.1.tar.gz 327832 BLAKE2B 5aa80f6cde0409d4daaaf9923e17a97a5592321e5d3c671d6ae07e68e62d42e987e51944ecb3d27fe1bff3cab0754c6e6ec8565e1c5ba34471896f2d6bdee0e7 SHA512 7dc1c2f658d9722cd64558a702f04409d10b87cb4ff7247c2fbd7f8d9a24387fef1b8ba4b7b183727bef21891c32d27d83aaa3607d063f8ad60702be4bfe5c3c
-EBUILD harminv-1.3.1-r1.ebuild 753 BLAKE2B 1da92a3b0405c4a7a4ea0d91a604b9ebce3c349e2a8f79010d3dc8075d77675e348d93d69dfb79776efab7cc34f4a55ef603b95c625b35e1f26a367a310bd77f SHA512 4eafc9b442d5463971bafcd57003073544117fa04510e42ed0e8d62032b072fee1e5d6d42c802596aed67371b66cc4647a7f814e2cde8c9334f0647e09d37729
-MISC metadata.xml 632 BLAKE2B 427eda18fb4a538628cf1854ee0c1e48a76997ffe248ec971c5324e53a847cc3c87dcdc76dab8fcc0c51589c17344f100a8dff8b3e2d201b0d91a57e7593ce70 SHA512 ec47048cde692010d9b562d430992630d9107e65d401a7f429a2e0658c8edaab2f200b2d84c233fe6481330c0ded1ff6672fd3b7b9f75a5130129e3037b9da9d
diff --git a/sci-physics/harminv/files/harminv-1.3.1-configure.ac.patch b/sci-physics/harminv/files/harminv-1.3.1-configure.ac.patch
deleted file mode 100644
index 508a8c177902..000000000000
--- a/sci-physics/harminv/files/harminv-1.3.1-configure.ac.patch
+++ /dev/null
@@ -1,31 +0,0 @@
---- a/configure.ac
-+++ b/configure.ac
-@@ -9,7 +9,7 @@
- # *not* the same as the "public" version number.  CURRENT:REVISION:AGE
- SHARED_VERSION_INFO="2:4:0"
- AC_SUBST(SHARED_VERSION_INFO)
--AM_ENABLE_SHARED(no) dnl shared libs cause too many headaches to be default
-+AM_ENABLE_SHARED(yes) dnl shared libs cause too many headaches to be default
- 
- ##############################################################################
- 
-@@ -123,9 +123,16 @@
- ###########################################################################
- 
- # Checks for BLAS/LAPACK libraries:
--
--ACX_BLAS([], [AC_MSG_ERROR([BLAS library not found])])
--ACX_LAPACK([], [AC_MSG_ERROR([LAPACK library not found])])
-+sinclude(acx_blas.m4)
-+ACX_BLAS
-+if test x"$BLAS_LIBS" = x ; then
-+   AC_MSG_ERROR([BLAS library not found])
-+fi
-+sinclude(acx_lapack.m4)
-+ACX_LAPACK
-+if test x"$LAPACK_LIBS" = x ; then
-+   AC_MSG_ERROR([LAPACK library not found])
-+fi
- 
- LIBS="$LAPACK_LIBS $BLAS_LIBS $LIBS $FLIBS"
- 
diff --git a/sci-physics/harminv/harminv-1.3.1-r1.ebuild b/sci-physics/harminv/harminv-1.3.1-r1.ebuild
deleted file mode 100644
index 396cc6fe8440..000000000000
--- a/sci-physics/harminv/harminv-1.3.1-r1.ebuild
+++ /dev/null
@@ -1,33 +0,0 @@
-# Copyright 1999-2016 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-
-EAPI=6
-
-inherit autotools toolchain-funcs
-
-DESCRIPTION="Extraction of complex frequencies and amplitudes from time series"
-HOMEPAGE="http://ab-initio.mit.edu/harminv/"
-SRC_URI="http://ab-initio.mit.edu/${PN}/${P}.tar.gz"
-
-LICENSE="GPL-2"
-SLOT="0"
-KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux"
-IUSE="static-libs"
-
-RDEPEND="virtual/lapack"
-DEPEND="${RDEPEND}
-	virtual/pkgconfig"
-
-PATCHES=( "${FILESDIR}"/${P}-configure.ac.patch )
-
-src_prepare() {
-	default
-	eautoreconf
-}
-
-src_configure() {
-	econf \
-		$(use_enable static-libs static) \
-		--with-blas="$($(tc-getPKG_CONFIG) --libs blas)" \
-		--with-lapack="$($(tc-getPKG_CONFIG) --libs lapack)"
-}
diff --git a/sci-physics/harminv/metadata.xml b/sci-physics/harminv/metadata.xml
deleted file mode 100644
index 5ddaae490a92..000000000000
--- a/sci-physics/harminv/metadata.xml
+++ /dev/null
@@ -1,15 +0,0 @@
-<?xml version="1.0" encoding="UTF-8"?>
-<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
-<pkgmetadata>
-  <maintainer type="project">
-    <email>sci-physics@gentoo.org</email>
-    <name>Gentoo Physics Project</name>
-  </maintainer>
-  <longdescription lang="en">
-  Harminv is a program to solve the problem of harmonic inversion,
-  given a discrete-time, finite-length signal that consists of a sum of
-  finitely-many sinusoids (possibly exponentially decaying) in a given
-  bandwidth, it determines the frequencies, decay constants, amplitudes,
-  and phases of those sinusoids.
-</longdescription>
-</pkgmetadata>
diff --git a/sci-physics/meep/Manifest b/sci-physics/meep/Manifest
deleted file mode 100644
index c4694fe3022d..000000000000
--- a/sci-physics/meep/Manifest
+++ /dev/null
@@ -1,5 +0,0 @@
-AUX meep-1.2-no-auto-mpb.patch 652 BLAKE2B d5e2eadafa10bd9b2aa58f0eae3f57f297ef874a1a89b89dd3d0e44910738490d348e5e61ac345088f90a9b6c5dae36c9863a82b2efc4393361366e5c71b2065 SHA512 4a25e919ac828920fb1ad2395acb897e0b9d9123fa55ee3ed33a4c07e79d250602cb496435482710315c077d3d5408d0192d629afd70dca64aedc7a649c7091f
-AUX meep-1.2-pc-no-ldflags.patch 503 BLAKE2B c571fd76c2ad9449245cb6fee07bcef8d815814e486a28e5d8283ce696d0feb0424319020b368cd7ebaa4685f2fec47747516ffed74e31620671bc1e7b73a921 SHA512 2e8602f21814f4edef4b0572180b0b4f41f91a23d7e2576da6a2c62d602e55e9a70b5c7124cb60b7ea4d2f6debd10db3a30aa451d4b6d82eed7a7d9655a26a82
-DIST meep-1.3.tar.gz 740890 BLAKE2B e94fe9709c42ff99f764e34e0db0aa7dc7a8dfa640f539d44e952bf9870686956a8cbf24d3ce0fae95f44c659b5a19075b6377ef2aa68fb51166f09a3e0f7a3b SHA512 4ad8d68f27d9971fe6dd4b8440f78d5b141fe747a80c50da55ecbc56a5beb0c2d31441fb46b54cac3c62d4cb34cb1ce6819c06bd2c54bc35f129ba683dc84aea
-EBUILD meep-1.3.ebuild 1137 BLAKE2B 09c1a9a0c3aa185d11f06e65a523ab03b7dfe7a7725b926d68b46b39f97cee9abd987ff0266a01f85929f41a764da2dd54e056136289374fa061e6fd2a485513 SHA512 c4bfee913eb8d32b0e5f67ffa87a27eff18292dcf3302b29fe1531865e02b564e8c8f43bdc4f4d8d357275238f827d82c4102fc5e68726a9ff67f7ea93ad3da9
-MISC metadata.xml 525 BLAKE2B 3dbcefd51f53261e0adee37fc29279cc1b0bd9df58027ebd50b7373a41fa1af8e9c35d72a3eefad6b0e23b9108c0b5ab2a8ce923a3e1f982d4982c49b46367f1 SHA512 1d6f8f93e9ad60102daeabf5a6017f0f3724b2bfa2ecfca30e6e2069bb624e5067a8743b8839996b3eadc627f431b84b911b2ea4de9a5a97ee30921e158318cd
diff --git a/sci-physics/meep/files/meep-1.2-no-auto-mpb.patch b/sci-physics/meep/files/meep-1.2-no-auto-mpb.patch
deleted file mode 100644
index 8c287f208d65..000000000000
--- a/sci-physics/meep/files/meep-1.2-no-auto-mpb.patch
+++ /dev/null
@@ -1,16 +0,0 @@
-diff -Nur meep-1.2.orig/configure.ac meep-1.2/configure.ac
---- meep-1.2.orig/configure.ac	2012-08-14 21:52:13.000000000 +0100
-+++ meep-1.2/configure.ac	2012-08-14 22:00:55.000000000 +0100
-@@ -161,8 +161,10 @@
- 
- ###########################################################################
- # MPB library
--
--AC_CHECK_HEADER(mpb.h, [have_mpb=maybe], [have_mpb=no])
-+AC_ARG_WITH(mpb, [AC_HELP_STRING([--without-mpb],[do not build with mpb])], ok=$withval, ok=yes)
-+if test "$ok" = "yes"; then
-+   AC_CHECK_HEADER(mpb.h, [have_mpb=maybe], [have_mpb=no])
-+fi
- 
- if test $have_mpb = maybe; then
-   if test "x$acx_lapack_ok" = x -a "$have_harminv" = xno; then
diff --git a/sci-physics/meep/files/meep-1.2-pc-no-ldflags.patch b/sci-physics/meep/files/meep-1.2-pc-no-ldflags.patch
deleted file mode 100644
index d7b2f72eaffc..000000000000
--- a/sci-physics/meep/files/meep-1.2-pc-no-ldflags.patch
+++ /dev/null
@@ -1,12 +0,0 @@
-diff -Nur meep-1.2.orig/configure.ac meep-1.2/configure.ac
---- meep-1.2.orig/configure.ac	2012-08-14 21:52:13.000000000 +0100
-+++ meep-1.2/configure.ac	2012-08-14 21:54:49.000000000 +0100
-@@ -224,7 +224,7 @@
- ##############################################################################
- # Libraries and flags (other than -lmeep) required to link Meep:
- 
--MEEPLIBS="$LDFLAGS $LIBS"
-+MEEPLIBS="$LIBS"
- AC_SUBST(MEEPLIBS)
- 
- ##############################################################################
diff --git a/sci-physics/meep/meep-1.3.ebuild b/sci-physics/meep/meep-1.3.ebuild
deleted file mode 100644
index 6cc3d1495390..000000000000
--- a/sci-physics/meep/meep-1.3.ebuild
+++ /dev/null
@@ -1,58 +0,0 @@
-# Copyright 1999-2016 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-
-EAPI=6
-
-inherit autotools
-
-DESCRIPTION="Simulation software to model electromagnetic systems"
-HOMEPAGE="http://ab-initio.mit.edu/meep/"
-SRC_URI="http://ab-initio.mit.edu/meep/${P}.tar.gz"
-
-LICENSE="GPL-2"
-SLOT="0"
-KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux"
-IUSE="examples hdf5 guile mpi"
-
-RDEPEND="
-	sci-libs/fftw:3.0=
-	sci-libs/gsl:=
-	sci-physics/harminv
-	guile? ( >=sci-libs/libctl-3.2 )
-	hdf5? ( sci-libs/hdf5:= )
-	mpi? ( virtual/mpi )"
-DEPEND="${RDEPEND}
-	virtual/pkgconfig"
-
-PATCHES=(
-	"${FILESDIR}"/${PN}-1.2-pc-no-ldflags.patch
-	"${FILESDIR}"/${PN}-1.2-no-auto-mpb.patch
-)
-
-src_prepare() {
-	default
-	eautoreconf
-}
-
-src_configure() {
-	econf \
-		$(use_with mpi) \
-		$(use_with hdf5) \
-		$(use_with guile libctl)
-}
-
-src_test() {
-	# pml test buggy with optimization on
-	# http://thread.gmane.org/gmane.comp.science.electromagnetism.meep.general/4579
-	emake -C tests pml CXXFLAGS="-O0"
-	emake check
-}
-
-src_install() {
-	default
-
-	if use examples; then
-		dodoc -r examples
-		docompress -x /usr/share/doc/${PF}/examples
-	fi
-}
diff --git a/sci-physics/meep/metadata.xml b/sci-physics/meep/metadata.xml
deleted file mode 100644
index a6fba91cb5cc..000000000000
--- a/sci-physics/meep/metadata.xml
+++ /dev/null
@@ -1,14 +0,0 @@
-<?xml version="1.0" encoding="UTF-8"?>
-<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
-<pkgmetadata>
-<maintainer type="project">
-  <email>sci-physics@gentoo.org</email>
-  <name>Gentoo Physics Project</name>
-</maintainer>
-<longdescription lang="en">
-  The MIT Electromagnetic Equation Propagation (MEEP) is a
-  finite-difference time-domain (FDTD) simulation software package
-  developed at MIT to model electromagnetic systems, along with the MPB
-  eigenmode package.
-</longdescription>
-</pkgmetadata>
diff --git a/sci-physics/root/Manifest b/sci-physics/root/Manifest
index 4ac672a7714c..61a1c2fa9bba 100644
--- a/sci-physics/root/Manifest
+++ b/sci-physics/root/Manifest
@@ -13,5 +13,5 @@ EBUILD root-6.12.06-r11.ebuild 7866 BLAKE2B e12510ed1d12803dd4bac0ad21616aa3d1ce
 EBUILD root-6.14.08-r4.ebuild 8052 BLAKE2B 82c9067edf53e5102ccbe89c63e3ab122d17dacf2cc686e0c7450238b110fb796490dc8887d59b2c7287f4a74fc05d773fdfab11aa7a6d932b82993349699105 SHA512 5027873eefb0f5655f8d990ed434a84a0a72f39561fca2e6537b9248406c48ad8636f46942680c62d47665629fc80bcd54092852ea6b954946b3ac980efa1dbb
 EBUILD root-6.16.00-r3.ebuild 8138 BLAKE2B f87aa6680d0ff4887ae4149e16d38dd525056441f8465d4375059eec662de50cecb9eb64d00e76f4895d11bafb2dbbd2f47113e7b5cd008d6f25f67b78a7c0d0 SHA512 1e3d0a46d8b3198fe6334a9f8ebfe47144da445042e9fb43a53328c42bfa29e246347586861a83fd594000af458ad2db52f8950fd309547b4b71f7c6f6d6d967
 EBUILD root-6.18.00-r2.ebuild 7600 BLAKE2B 7522424247f422a763fb957948bc4e39a8121daaa79476b1d14d849afb7856ea1df18a6bf2f900b37add07cdadc4779808f70cbaed2123385759187163339a03 SHA512 f3d7fc72787d547382487d0496729f392af6617372a73acf0d6b7cec16faa8c029d739e61ad0a198cb95299b959ca0efbc75552e6ccd24bc98b1ac1016bcc81a
-EBUILD root-9999.ebuild 7616 BLAKE2B d1c3f74707686d2d4804f6efac7cfa734479e86619cbd1a8c977187535555e2ae759d27171f1d9c7ee0b13b7dc98ac5cffa87bc1bbe3a813ce94db083b35181d SHA512 bc88053326c6a61dff904107437fcb7e3ae3b714b3afd39ca7530785716f155c2275811fbf3801ed3364dccdfaa2b0b50a6287d1106ce02197d2cfcedca1194d
+EBUILD root-9999.ebuild 7517 BLAKE2B 6cee68b58c2e6fe2d30ffbb08af824a40e2b815aff1980c8d4d39f80579749d9f92b2e3eab3628bd368d5b3fa624d368d0f1657610a04d580cae3fa1f0a7cd49 SHA512 bd21527629e472f870036afea07d4222a03ab69e9238d8201c5eacdc2ce3025561be636aa430d6530bffdb8d7f66c193a657ba39d870eab7aae01614516d6350
 MISC metadata.xml 3218 BLAKE2B f23175b1a5998bbecdcdb6e5f42d08bd8e16aaeee79f43d30e0906977f389e18a19ddceeba24009360c2f717c29162c8e30b807bda993492f27429802dc62883 SHA512 d3bdc5bce1d1ac904e5a7a9f21bca65deb480ecbd1362a3251c93e09ab07fdcdd6dfd8900e62df3853b7e200880850d9010122500a081fdedb6b43adae25a6bd
diff --git a/sci-physics/root/root-9999.ebuild b/sci-physics/root/root-9999.ebuild
index 0b58a32c0138..e841fafab73c 100644
--- a/sci-physics/root/root-9999.ebuild
+++ b/sci-physics/root/root-9999.ebuild
@@ -16,9 +16,9 @@ HOMEPAGE="https://root.cern"
 
 IUSE="+X aqua +asimage +c++11 c++14 c++17 cuda +davix debug emacs
 	+examples fits fftw fortran +gdml graphviz +gsl http libcxx +minuit
-	mysql nosplash odbc +opengl oracle postgres prefix pythia6 pythia8
-	+python qt5 R +roofit root7 shadow sqlite +ssl +tbb test +tmva
-	+unuran vc vmc +xml xrootd"
+	mysql odbc +opengl oracle postgres prefix pythia6 pythia8 +python
+	qt5 R +roofit root7 shadow sqlite +ssl +tbb test +tmva +unuran vc
+	vmc +xml xrootd"
 
 if [[ ${PV} =~ "9999" ]] ; then
 	inherit git-r3
@@ -136,10 +136,6 @@ src_prepare() {
 
 	# CSS should use local images
 	sed -i -e 's,http://.*/,,' etc/html/ROOT.css || die "html sed failed"
-
-	if use nosplash; then
-		sed -i -e '/bool gNoLogo/s@false@true@' rootx/src/rootx.cxx
-	fi
 }
 
 # Note: ROOT uses bundled clang because it is patched and API-incompatible