gentoo auto-resync : 30:01:2023 - 02:56:37

6 files changed, 0 insertions, 219 deletions

diff --git a/sci-physics/Manifest.gz b/sci-physics/Manifest.gz
index 8fbb465e0036..aafde608a202 100644
--- a/sci-physics/Manifest.gz
+++ b/sci-physics/Manifest.gz
diff --git a/sci-physics/clhep/Manifest b/sci-physics/clhep/Manifest
index 7a732d562914..d2aff2107eb3 100644
--- a/sci-physics/clhep/Manifest
+++ b/sci-physics/clhep/Manifest
@@ -1,7 +1,5 @@
-DIST clhep-2.4.5.1.tgz 1551358 BLAKE2B e428946163dd525291643e9cdb4921dea64feacf4281aaa4b1466bed021e123ac29fa654e115efa3bb1d154869b4c04196f562850b5e6e162e98001a3d901727 SHA512 68612004a92c6dc036471f440bc00605b611a6f2f9f46ab7343c1f83357498bb7518c4dd2e44d0aef754188d5efbc3ac9187c2371bc6bd46ca076ab4ff13afae
 DIST clhep-2.4.5.3.tgz 1552597 BLAKE2B a2edcbe133af98c817982f9d9f787fbbc76a1e8a10a29c890cbdd223670ee2e9d6dec872de80880e5d286790ee0168501cd3270bdbed04f9781554ee35f6eb1a SHA512 f677c93bb53047167fe0f22cbf1f5d97f27476b64566817a799240bfce8e9fe7fd658a168c25fad76a35c6eb92e1e42ec7b88960facb6632279367f0606282c8
 DIST clhep-2.4.6.2.tgz 1550248 BLAKE2B 10da3a7adc295c306d3ad57bff68489852717885eac544fe6858aed3868047cb377565f55a861751a09ea6c88584fe94b685f5dcef84c6e51afdddef8080eeb2 SHA512 cae1295d27b804c3b45c21195d8d45e9403e9449ca12d1e1a031615584f46784a1c6f75fdbc51467b901fa47057aa79077bd224994f0b6261abefc99810c2687
-EBUILD clhep-2.4.5.1.ebuild 1199 BLAKE2B f665541db0eb7c9ee4228e50ffe58377791c4e562904a46f2b48aa83c58a328e5aad2131433b5b19d5ca072c6f635c0ddd9cd57b91c178fc6feb4a7a10482b5d SHA512 c93e9ab497162f6b53fe4220a5cc6adb90aba2a3061126681f88265e2a739b24b5b27381c52fce8ffbd889e8a7d8c483227ed2115c3293ef74f3ecdc37ceea5b
 EBUILD clhep-2.4.5.3.ebuild 1199 BLAKE2B f665541db0eb7c9ee4228e50ffe58377791c4e562904a46f2b48aa83c58a328e5aad2131433b5b19d5ca072c6f635c0ddd9cd57b91c178fc6feb4a7a10482b5d SHA512 c93e9ab497162f6b53fe4220a5cc6adb90aba2a3061126681f88265e2a739b24b5b27381c52fce8ffbd889e8a7d8c483227ed2115c3293ef74f3ecdc37ceea5b
 EBUILD clhep-2.4.6.2.ebuild 1201 BLAKE2B 8eb32e23a223bfcdb1f0df4579552a34880f37874e1669fbb148dc672d0ad97d5da366831a5fa3472a4577ca60974042d9a20d52bec628096054dc52f54638c8 SHA512 f9f12db370d94fd0698ce060d60141d439405ba3010e85ff169af16a49a0b80f02db58278315baddeb5a1b2fc6522b0e72c13e2de3c047db9e5620928ce29c61
 MISC metadata.xml 497 BLAKE2B 9f68cecc9a1a96ebbc0f8408a2124a47414e987bf458f979548b458676ad45644d9fa3c690200be93aa01ef1d205e5bc3e7596b18d48a1b8a85455e2fc84fe8a SHA512 9ef1d630cfd0214dc7fb0c8021560d974cebf717c3eecd27f7abc7ee634edcaf2cc128a808b21a8676fc7bed2bf93d927cd682d4b37ef9f9c34041b0c8a06a2d
diff --git a/sci-physics/clhep/clhep-2.4.5.1.ebuild b/sci-physics/clhep/clhep-2.4.5.1.ebuild
deleted file mode 100644
index bae7df5849e2..000000000000
--- a/sci-physics/clhep/clhep-2.4.5.1.ebuild
+++ /dev/null
@@ -1,55 +0,0 @@
-# Copyright 1999-2022 Gentoo Authors
-# Distributed under the terms of the GNU General Public License v2
-
-EAPI=7
-
-inherit cmake
-
-DESCRIPTION="High Energy Physics C++ library"
-HOMEPAGE="http://proj-clhep.web.cern.ch/proj-clhep/"
-SRC_URI="http://proj-clhep.web.cern.ch/proj-clhep/dist1/${P}.tgz"
-LICENSE="GPL-3 LGPL-3"
-SLOT="2/${PV}"
-KEYWORDS="amd64 x86 ~amd64-linux ~x86-linux ~x64-macos"
-
-IUSE="doc test threads"
-RESTRICT="!test? ( test )"
-
-BDEPEND="
-	doc? (
-		app-doc/doxygen
-		dev-texlive/texlive-bibtexextra
-		dev-texlive/texlive-fontsextra
-		dev-texlive/texlive-fontutils
-		dev-texlive/texlive-latex
-		dev-texlive/texlive-latexextra
-	)
-"
-
-S="${WORKDIR}/${PV}/CLHEP"
-
-src_prepare() {
-	cmake_src_prepare
-
-	# respect flags
-	sed -i -e 's:-O::g' cmake/Modules/ClhepVariables.cmake || die
-	# dont build test if not asked
-	if ! use test; then
-		cmake_comment_add_subdirectory test
-	fi
-	# gentoo doc directory
-	if use doc; then
-		grep -rl 'share/doc/CLHEP' |
-		xargs sed -i \
-			-e "s:share/doc/CLHEP:share/doc/${PF}:" \
-			{.,*}/CMakeLists.txt || die
-	fi
-}
-
-src_configure() {
-	local mycmakeargs=(
-		-DCLHEP_BUILD_DOCS=$(usex doc)
-		-DCLHEP_SINGLE_THREAD=$(usex threads no yes)
-	)
-	cmake_src_configure
-}
diff --git a/sci-physics/espresso/Manifest b/sci-physics/espresso/Manifest
index 582ffb2795eb..506e12785d28 100644
--- a/sci-physics/espresso/Manifest
+++ b/sci-physics/espresso/Manifest
@@ -1,8 +1,5 @@
-AUX espresso-4.1.3-gcc-11.patch 1134 BLAKE2B 40072bba384002ab091427d3c358248fba4b0d581be4d56c37cd76406c6da7933016c878139ec6d67e64a45854eb2723712e8ea048013fb8551e196d95f969ff SHA512 c42abfea997a58e70cb79ad554b2a40fa28d844f4d5ed262cc8a7e4420aa5d6e55fd0349fe19cd3654a8b86335b85212ccc3fe927c7418742f4a2e3310ce8f96
 AUX espresso-4.2.0-fix-disable-test.patch 445 BLAKE2B b1eb0c5004c26fcd17700c098108ec32cd3bfde60f732095a4555294ba0b81e47467311a1dbe379d2144f031f3515f658897003dfd1c7e718b711a2fc5f2ed6a SHA512 f7509a2c5cc73642e487130bf4b6b9f9a1360855908dfcd507490065f32e091c67a329af7eed9146ad0734e778365198c44c32b444c055d4829048e8c71bcf50
-DIST espresso-4.1.3.tar.gz 16947336 BLAKE2B 14d3513eda87f62a8473a0cac0c273b3590bf78ed48b96e76d10c106713f7bbd7d37de951bd3d9210062b34c02bd83a68f3aaf1ca8215ed1dcde590e4e99b113 SHA512 1fe82683eddb7bfd9bae6e446b0f42a50087d755995963905cd419473ad17b204f20049d0cf4af9264898dd6fee36f02744b38fa45cd0e33086374cf2aebd934
 DIST espresso-4.2.0.tar.gz 14000445 BLAKE2B 79de0e364cd932e534b0e1ee9433ae90e4deeb1ade262aa6877a30c8656f03155ca77b8feafdd5607f83e36ee4f47ad7ec28be353bc3358216a9c9f8c0902323 SHA512 b80afb1bef57911fd79b88378a5b2e31b07a18d415fe17fcd5ed28fb448eeca5922f98af8df42117e9e869645765d55ecfb3aae615fa6a53c915f7d8a63081c5
-EBUILD espresso-4.1.3.ebuild 2769 BLAKE2B cc01970bf5343efaf4c0637eda46157c870bc792fca233af6d77f3d49f411a655e757980373e9f060f8577f460f3486e6e331629757bd850348b756b384da28b SHA512 3521265c2e38d1129ab0765b8409a309b2168c1a4b4eec36703a57979c64777523fe3f5978a24aa43eb7e1e7a078f5aa487f9d17ea3083fdeaabfd0c7f47bbd4
 EBUILD espresso-4.2.0.ebuild 2643 BLAKE2B 9cc812f347928672c62b2d6c295e619ea2ea530fe36441c67341ce5cca289544ce0ec0a77069a680f16d31421f76d4346bc5858d9037f22d32ed3ca1a40a61b4 SHA512 63c5622de410b2bee512fcd1c62b367e206c9cbf26b410cf8f3651cc75fc0cf4cfc41af52aab8535ae6fd06baef6c69bcdfe994ddfd79dc293c12b623420c0e6
 EBUILD espresso-9999.ebuild 2569 BLAKE2B 019aaa89a7666519c34b897b367e6179b93998a8364ca4e3951de0f3fcccd21a407ccb1902eca135ce69932207832a2fa538feb63b68ea28fd4ee9fc4016b5c5 SHA512 38268ca89471afc8a3189ad1ea82d3b9e2c9dd4e2295d241d5857bf10a4630a402763e0de56d93312cd1798f525aab8f0b894fbcd64a7620cba370090b9d9af3
 MISC metadata.xml 477 BLAKE2B a7d573451bf567418f804666abb37160416952f8662c79a5b36172c1358d25b985f62e20bdd11f7163a002e05c061d81331f52607c50315d477919f0c94f344b SHA512 d2fb246a3f9b2f786f7eb02b65cbcd5604daca6f4fd8ca160828e2784dc2eb9c4340bc3a8747808f2e2d193e6b27c4b9a1acfd82c3b6e0eae7788fd73f25cde2
diff --git a/sci-physics/espresso/espresso-4.1.3.ebuild b/sci-physics/espresso/espresso-4.1.3.ebuild
deleted file mode 100644
index 17f2fbd1addc..000000000000
--- a/sci-physics/espresso/espresso-4.1.3.ebuild
+++ /dev/null
@@ -1,122 +0,0 @@
-# Copyright 1999-2023 Gentoo Authors
-# Distributed under the terms of the GNU General Public License v2
-
-EAPI=7
-
-PYTHON_COMPAT=( python3_9 )
-CMAKE_MAKEFILE_GENERATOR="emake"
-
-inherit cmake cuda python-single-r1 savedconfig
-
-DESCRIPTION="Extensible Simulation Package for Research on Soft matter"
-HOMEPAGE="http://espressomd.org"
-
-if [[ ${PV} = 9999 ]]; then
-	EGIT_REPO_URI="https://github.com/${PN}md/${PN}.git"
-	EGIT_BRANCH="python"
-	inherit git-r3
-else
-	SRC_URI="https://github.com/${PN}md/${PN}/releases/download/${PV}/${P}.tar.gz"
-	KEYWORDS="~amd64 ~x86 ~amd64-linux"
-fi
-
-LICENSE="GPL-3"
-SLOT="0"
-IUSE="cuda doc examples +fftw +hdf5 test"
-RESTRICT="!test? ( test )"
-
-REQUIRED_USE="
-	${PYTHON_REQUIRED_USE}"
-
-RDEPEND="
-	${PYTHON_DEPS}
-	$(python_gen_cond_dep '
-		>=dev-python/cython-0.26.1[${PYTHON_USEDEP}]
-		dev-python/numpy[${PYTHON_USEDEP}]
-	')
-	cuda? ( >=dev-util/nvidia-cuda-toolkit-4.2.9-r1 )
-	fftw? ( sci-libs/fftw:3.0 )
-	dev-libs/boost:=[mpi]
-	hdf5? ( sci-libs/hdf5:=[mpi] )"
-
-DEPEND="${RDEPEND}
-	doc? (
-		app-doc/doxygen[dot]
-		dev-texlive/texlive-latexextra
-		virtual/latex-base )"
-
-DOCS=( AUTHORS NEWS README ChangeLog )
-
-S="${WORKDIR}/${PN}"
-
-PATCHES=(
-	"${FILESDIR}"/${P}-gcc-11.patch
-)
-
-src_prepare() {
-	use cuda && cuda_src_prepare
-	cmake_src_prepare
-}
-
-src_configure() {
-	local mycmakeargs=(
-		-DWITH_CUDA=$(usex cuda)
-		-DPYTHON_EXECUTABLE="${PYTHON}"
-		-DWITH_TESTS=$(usex test)
-		-DINSTALL_PYPRESSO=OFF
-		-DCMAKE_DISABLE_FIND_PACKAGE_FFTW3=$(usex !fftw)
-		-DWITH_HDF5=$(usex hdf5)
-		-DCMAKE_DISABLE_FIND_PACKAGE_HDF5=$(usex !hdf5)
-		-DCMAKE_SKIP_RPATH=YES
-	)
-	cmake_src_configure
-}
-
-src_compile() {
-	cmake_src_compile
-	use doc && cmake_build doxygen
-	[[ ${PV} = 9999 ]] && use doc && cmake_build ug dg tutorials
-}
-
-src_install() {
-	local i docdir="${S}"
-
-	cmake_src_install
-
-	python_optimize
-
-	insinto /usr/share/${PN}/
-	doins "${BUILD_DIR}/myconfig-sample.hpp"
-
-	save_config "${BUILD_DIR}/src/config/myconfig-final.hpp"
-
-	if use doc; then
-		[[ ${PV} = 9999 ]] && docdir="${BUILD_DIR}"
-		newdoc "${docdir}"/doc/dg/dg.pdf developer_guide.pdf
-		newdoc "${docdir}"/doc/ug/ug.pdf user_guide.pdf
-		for i in "${docdir}/doc/tutorials/python"/*/[0-9]*.pdf; do
-			newdoc "${i}" "tutorial_${i##*/}"
-		done
-		dodoc -r "${BUILD_DIR}/doc/doxygen/html"
-	fi
-
-	if use examples; then
-		insinto "/usr/share/${PN}/examples/python"
-		doins -r samples/${i}/.
-	fi
-}
-
-pkg_postinst() {
-	echo
-	elog "Please read and cite:"
-	elog "ESPResSo, Comput. Phys. Commun. 174(9) ,704, 2006."
-	elog "https://dx.doi.org/10.1016/j.cpc.2005.10.005"
-	echo
-	elog "If you need more features, change"
-	elog "/etc/portage/savedconfig/${CATEGORY}/${PF}"
-	elog "and reemerge with USE=savedconfig"
-	echo
-	elog "For a full feature list see:"
-	elog "/usr/share/${PN}/myconfig-sample.hpp"
-	echo
-}
diff --git a/sci-physics/espresso/files/espresso-4.1.3-gcc-11.patch b/sci-physics/espresso/files/espresso-4.1.3-gcc-11.patch
deleted file mode 100644
index fcda88e9b8b8..000000000000
--- a/sci-physics/espresso/files/espresso-4.1.3-gcc-11.patch
+++ /dev/null
@@ -1,37 +0,0 @@
-https://src.fedoraproject.org/rpms/espresso/blob/f34/f/espresso-gcc11.patch
---- a/src/core/communication.hpp
-+++ b/src/core/communication.hpp
-@@ -49,6 +49,8 @@
-  *  to \ref CALLBACK_LIST.
-  */
- 
-+#include <cstddef>
-+
- #include "MpiCallbacks.hpp"
- 
- /* Includes needed by callbacks. */
-diff --git a/src/script_interface/ParallelScriptInterface.hpp b/src/script_interface/ParallelScriptInterface.hpp
-index c33e67d..02ad815 100644
---- a/src/script_interface/ParallelScriptInterface.hpp
-+++ b/src/script_interface/ParallelScriptInterface.hpp
-@@ -23,6 +23,7 @@
- #define SCRIPT_INTERFACE_PARALLEL_SCRIPT_INTERFACE_HPP
- 
- #include <utility>
-+#include <limits>
- 
- #include "MpiCallbacks.hpp"
- #include "ScriptInterface.hpp"
-diff --git a/src/utils/include/utils/NumeratedContainer.hpp b/src/utils/include/utils/NumeratedContainer.hpp
-index 1d99098..1191a79 100644
---- a/src/utils/include/utils/NumeratedContainer.hpp
-+++ b/src/utils/include/utils/NumeratedContainer.hpp
-@@ -24,6 +24,7 @@
-  *  Keep an enumerated list of T objects, managed by the class.
-  */
- 
-+#include <cstddef>
- #include <cassert>
- #include <set>
- #include <unordered_map>
-