gentoo resync : 31.08.2021

6 files changed, 47 insertions, 3 deletions

diff --git a/sci-physics/Manifest.gz b/sci-physics/Manifest.gz
index 2f6e066c3550..4d73d4a58737 100644
--- a/sci-physics/Manifest.gz
+++ b/sci-physics/Manifest.gz
diff --git a/sci-physics/espresso/Manifest b/sci-physics/espresso/Manifest
index 4d0b80204ec1..62b8f8d053fc 100644
--- a/sci-physics/espresso/Manifest
+++ b/sci-physics/espresso/Manifest
@@ -1,4 +1,5 @@
+AUX espresso-4.1.3-gcc-11.patch 1134 BLAKE2B 40072bba384002ab091427d3c358248fba4b0d581be4d56c37cd76406c6da7933016c878139ec6d67e64a45854eb2723712e8ea048013fb8551e196d95f969ff SHA512 c42abfea997a58e70cb79ad554b2a40fa28d844f4d5ed262cc8a7e4420aa5d6e55fd0349fe19cd3654a8b86335b85212ccc3fe927c7418742f4a2e3310ce8f96
 DIST espresso-4.1.3.tar.gz 16947336 BLAKE2B 14d3513eda87f62a8473a0cac0c273b3590bf78ed48b96e76d10c106713f7bbd7d37de951bd3d9210062b34c02bd83a68f3aaf1ca8215ed1dcde590e4e99b113 SHA512 1fe82683eddb7bfd9bae6e446b0f42a50087d755995963905cd419473ad17b204f20049d0cf4af9264898dd6fee36f02744b38fa45cd0e33086374cf2aebd934
-EBUILD espresso-4.1.3.ebuild 2703 BLAKE2B f1b9f9798f07d6b5f64a23bccc1364609f05c2f1b9090ed478e208fc725f3e351bb0899414d2fea3d7a7dfb787fcb4f0e5c9436b520561b8021479971b743543 SHA512 c62e72e432146556e446616702251acb67142982100d4525fb323bd12de0f1cca8e53169b576de729d09e1964b92a2b06b96362fe70aeeff9bf5f326f54ed6df
+EBUILD espresso-4.1.3.ebuild 2767 BLAKE2B 0ccf402e5234a75cf7c0b38eeb4d5e705a573e7ac08c734ca4cbc0230734646bb2ea17b0ad096fefe309a6387b5edf99e4168f586b2a675a0287f065821c7fe9 SHA512 576bb3bd73ba9b274b23c5df9bc6e20cdfaafbe3c6d1895dacb111f3bf29fa32eda3fe8ee1d85b7d120c49e9112ed0b6584628d4a164ca11ece980d8dea09c7a
 EBUILD espresso-9999.ebuild 2703 BLAKE2B f1b9f9798f07d6b5f64a23bccc1364609f05c2f1b9090ed478e208fc725f3e351bb0899414d2fea3d7a7dfb787fcb4f0e5c9436b520561b8021479971b743543 SHA512 c62e72e432146556e446616702251acb67142982100d4525fb323bd12de0f1cca8e53169b576de729d09e1964b92a2b06b96362fe70aeeff9bf5f326f54ed6df
 MISC metadata.xml 476 BLAKE2B 6c074886e03a8645cb40176234cfff18ec75c0c3faa9c72f2cce228cdcbb113eb870eb0aebde8c0c378aee65e54606addb114361255df082a00e4289cd9f0db1 SHA512 d50a5262cccf20c2949d76fbd7a17166985b018d7686deade58a2d748a91754f5691df28800f7d19f3c3f2a78755d3e90cf93f6273be849deea47ee9d7de0258
diff --git a/sci-physics/espresso/espresso-4.1.3.ebuild b/sci-physics/espresso/espresso-4.1.3.ebuild
index 19e9be04e85a..4c60379b475a 100644
--- a/sci-physics/espresso/espresso-4.1.3.ebuild
+++ b/sci-physics/espresso/espresso-4.1.3.ebuild
@@ -49,6 +49,10 @@ DOCS=( AUTHORS NEWS README ChangeLog )
 
 S="${WORKDIR}/${PN}"
 
+PATCHES=(
+	"${FILESDIR}"/${P}-gcc-11.patch
+)
+
 src_prepare() {
 	use cuda && cuda_src_prepare
 	cmake_src_prepare
@@ -79,6 +83,8 @@ src_install() {
 
 	cmake_src_install
 
+	python_optimize
+
 	insinto /usr/share/${PN}/
 	doins "${BUILD_DIR}/myconfig-sample.hpp"
 
diff --git a/sci-physics/espresso/files/espresso-4.1.3-gcc-11.patch b/sci-physics/espresso/files/espresso-4.1.3-gcc-11.patch
new file mode 100644
index 000000000000..fcda88e9b8b8
--- /dev/null
+++ b/sci-physics/espresso/files/espresso-4.1.3-gcc-11.patch
@@ -0,0 +1,37 @@
+https://src.fedoraproject.org/rpms/espresso/blob/f34/f/espresso-gcc11.patch
+--- a/src/core/communication.hpp
++++ b/src/core/communication.hpp
+@@ -49,6 +49,8 @@
+  *  to \ref CALLBACK_LIST.
+  */
+ 
++#include <cstddef>
++
+ #include "MpiCallbacks.hpp"
+ 
+ /* Includes needed by callbacks. */
+diff --git a/src/script_interface/ParallelScriptInterface.hpp b/src/script_interface/ParallelScriptInterface.hpp
+index c33e67d..02ad815 100644
+--- a/src/script_interface/ParallelScriptInterface.hpp
++++ b/src/script_interface/ParallelScriptInterface.hpp
+@@ -23,6 +23,7 @@
+ #define SCRIPT_INTERFACE_PARALLEL_SCRIPT_INTERFACE_HPP
+ 
+ #include <utility>
++#include <limits>
+ 
+ #include "MpiCallbacks.hpp"
+ #include "ScriptInterface.hpp"
+diff --git a/src/utils/include/utils/NumeratedContainer.hpp b/src/utils/include/utils/NumeratedContainer.hpp
+index 1d99098..1191a79 100644
+--- a/src/utils/include/utils/NumeratedContainer.hpp
++++ b/src/utils/include/utils/NumeratedContainer.hpp
+@@ -24,6 +24,7 @@
+  *  Keep an enumerated list of T objects, managed by the class.
+  */
+ 
++#include <cstddef>
+ #include <cassert>
+ #include <set>
+ #include <unordered_map>
+
diff --git a/sci-physics/root/Manifest b/sci-physics/root/Manifest
index 5fa216ce04b9..364b1e5de006 100644
--- a/sci-physics/root/Manifest
+++ b/sci-physics/root/Manifest
@@ -1,8 +1,8 @@
 AUX root-6.12.06_cling-runtime-sysroot.patch 989 BLAKE2B 8202cc8f2bf72cc25642d0a03ba26c3969069b291a6a22188879dbedbf0c3c496149f79f671d0eb51d81d0ee36565660d136b4741f5d018c2b05325ff08381f0 SHA512 c96dee9843da1051c54bd6870ef0a04714944ffe1f86800c9a51b8eb8ef84107d3315d3a708dcc0b651248af4bec362c7f31695514505045aeda9c793d40dc58
 DIST root_v6.22.08.source.tar.gz 173079716 BLAKE2B 0b3c15dfedd0215334dcd59db133aa9097709996e0e9cc20a1ae96f954ee607cad314291148f78a31f24ba78dee84204e617e17a6ed8a390503b068e8120e9f3 SHA512 2355e20b8c4d7ad747c31956a3ad0f6e7b70039f3e6613182bd7c53d0e8776267ee85fc1d8aad9ed0d942e28f4124ad79a7dc1082bb1ea7974be2cb6a8a85b39
-DIST root_v6.24.02.source.tar.gz 185205849 BLAKE2B 2b8b7aaf6d1bf498a52f341128ee3202ae5166d6ad49d8a0a05da64d4ed2887b50c22e67a7ce694e85d4330a1002937e21a4746be0342a9e21631e4b88125535 SHA512 8ff64688c6c675e157a5db504f8347511752dd10142c70af677fde9396841eb0a76bb9ec43631e73c83b09f278e34706a5492e22db52b6c100578329cef3c461
+DIST root_v6.24.04.source.tar.gz 185202985 BLAKE2B 2624984bc612d8fe40957278bc9155c7cb572e38ede0310a1946ebc4b308df3e2d2bc0fa48d25b600935905e7fb3d3c4c232bf019b267781e51398d0f519436c SHA512 175edb81a3a6eac80ba3fe1115dadb1098672463246a1eab3fe821414adf64257b4c803a8e4c04eb7847133138c14cdcebd9be8bb26e46b2ea3bf44461a6f0e3
 EBUILD root-6.22.08-r2.ebuild 7549 BLAKE2B bc4922e1df99554dcdb864aee4825abe01e0e082434bad558b7f08d95a68684b9971cc60dd83bbacbb3a3cffcae242ff599b6aad763216432fd1ec91054210ac SHA512 95c26e0f519cfc60e68e631e6798239ceb74ff879cc6fe6de8e5ca5f2b7622a2a1e3d3d1208a1c002a80bd2fa879a1886e7309dd6badc1124c9f4ebc71a36ed2
-EBUILD root-6.24.02-r1.ebuild 7788 BLAKE2B 1a95495c58a99a6293882f5aa183a79371e2591955dfca3fc14030c285de64794a88f66ac61b35fee72e92f7a9c0a33d77df2baaedb5f3180fd590feca756658 SHA512 843936f1a6a0748493165b963f64cd48d6cc44396cf070b790e43d3218854901ea743dfafcca5cc2a1fadcc84d313edbc6e496c805260ff002c09a64c853cf79
+EBUILD root-6.24.04.ebuild 7788 BLAKE2B 1a95495c58a99a6293882f5aa183a79371e2591955dfca3fc14030c285de64794a88f66ac61b35fee72e92f7a9c0a33d77df2baaedb5f3180fd590feca756658 SHA512 843936f1a6a0748493165b963f64cd48d6cc44396cf070b790e43d3218854901ea743dfafcca5cc2a1fadcc84d313edbc6e496c805260ff002c09a64c853cf79
 EBUILD root-6.24.9999.ebuild 8259 BLAKE2B c1b814b1e90ec14576f17d3f611ebc95a32cae022c5b34b012a0ec29b03d7df6257a37717593023706397bd822f7803f40a6f9a47c3c3fa10f1ce8e5268168f8 SHA512 9c13e27417e84e806ccce0c0f3c3efc0962889da31df9ec098a8ccc51885e584c6f12dad1dc58b7b9fde95bf0fd9a31d6d34d7b882b58a3cdd1b1e618c9aee16
 EBUILD root-9999.ebuild 8259 BLAKE2B c1b814b1e90ec14576f17d3f611ebc95a32cae022c5b34b012a0ec29b03d7df6257a37717593023706397bd822f7803f40a6f9a47c3c3fa10f1ce8e5268168f8 SHA512 9c13e27417e84e806ccce0c0f3c3efc0962889da31df9ec098a8ccc51885e584c6f12dad1dc58b7b9fde95bf0fd9a31d6d34d7b882b58a3cdd1b1e618c9aee16
 MISC metadata.xml 3149 BLAKE2B 88e20041b72bc4507f253ea0b9096567f6a7c5c7f7bf6851adfb69c24aedb73fb68b2541538cd01fd51d944425c22f4b7154379ac70d851659efeaa1e3a07337 SHA512 65a82570e75f9b4b3e6f8d1e1cfd1aad5f3e2199843853392b51ea1e1f4dcc7ef6500196aa0f759726cb0d0e17be19055d8c9c87e745fa11d337acc2eaf5ce74
diff --git a/sci-physics/root/root-6.24.02-r1.ebuild b/sci-physics/root/root-6.24.04.ebuild
index 19bce3d18d03..19bce3d18d03 100644
--- a/sci-physics/root/root-6.24.02-r1.ebuild
+++ b/sci-physics/root/root-6.24.04.ebuild