reinit the tree, so we can have metadata

6 files changed, 295 insertions, 0 deletions

diff --git a/sci-physics/fastjet/Manifest b/sci-physics/fastjet/Manifest
new file mode 100644
index 000000000000..b1c9bdfd04ff
--- /dev/null
+++ b/sci-physics/fastjet/Manifest
@@ -0,0 +1,9 @@
+AUX fastjet-3.0.3-system-siscone.patch 4191 SHA256 57d1bc7d85d2dbc0fe4d8b38727562db8a8758c6b33bc3cc2d4363d263f63a5d SHA512 34ba5e61364f9fe090389edbeda4370b2707e89fab2a00e941cabe496f8e7cdd65fb1fccdb48f000247b0e6bb3abc79bb995931fd4a9709584eed8eaab42957c WHIRLPOOL 217436144a424196b96f5d123ea00c9be8a5a4c44011e6605208198e64430ecbd737e8dfe4ba327b58c234551fa9308220e7fac5d71b9d36bb58b727a0e34d21
+AUX fastjet-3.0.6-system-siscone.patch 3726 SHA256 10f150979e7f1f06c71d57b22d6161332ebddbef20e0ce1caa7787e512e72125 SHA512 7522e3fd0fe789bc5b3172c2c26566136004b828a46a81fb0ec39bb6bedbf358efc0b51acab8cb19a40dd5b4138190f87655ddd2679cc91c819f5c7c9e9f4c57 WHIRLPOOL 3a45e02c436eba0314ca5a6e6a589afd042f083ffbbeb13f3c2317b540333c33b1a8d021adaab7e68aee8f3c7d1f5bf1313bcc24aaa6f51c06e5ddec04f5d0f7
+DIST fastjet-3.0.3.tar.gz 2240610 SHA256 6a3e5869cf43b325c7222a925e195b2bd624db922958a926cb4211c00882a50d SHA512 1fcdd0998d222ae089f10676ae1048fdce3e90f6aef3cd51463719b7ab26f8bcdd599d9521c6f9ef18e3989dbffd7f06da717ce845ab7e486a99433129b56f41 WHIRLPOOL b43091b978bde5189ed009ad424934d45607717bfc81e4d0b49c1ce634650bbf9e51019c7bfb0f6ce6298a697e6c8be296feaae1ac31bd2184e44b53a538ba48
+DIST fastjet-3.0.6.tar.gz 2216501 SHA256 9718f1d014afe4433bc0612a67a050d720c486fcfa7ad9c9b96bf087b0f3da0b SHA512 1f01b7ed0e07bd94c88faa123f72c2e3bcd81ad32ab4d03dc0a18dd18635f3b18ba8d339176b0ef1d6e58cecd9f37aaea30b4ad909d2782ce5be7c11e205c3a5 WHIRLPOOL 8c1aeab2724940e41ca6eed093582d6d9a5424b7f2b86af00bd7e1fedd3df0157538c6d97ff08147a4e3a5300d035d683df31b4a7a9d36bc9c14eca9375ae1e1
+EBUILD fastjet-3.0.3-r1.ebuild 1236 SHA256 1625bdf20e2085ba255130295b61232770ac7bf9fc51d5113a98a42786ee748e SHA512 525a1a10764428f12d3fc6a0f89251f9d5396e5a1cd3252c15373d80466e605c59faedb8a20a0d280a4f2bc11e3d53cc58ebc11b7667089263efefd8e52c64b1 WHIRLPOOL bd7e8470f6cb521c9465225680100e37342f701ed0d5a5d41e8e179d4f79d3bc432a52e56b591d1528dd1e9a96116c16517ff28704e4574f7d04dafe8e7faadf
+EBUILD fastjet-3.0.6-r1.ebuild 1240 SHA256 eafa5722af123c090884a980257ceeded52acb3f07ca287e01435358ecb7ffb8 SHA512 36b884732b7fcc2467cb383decdc285b8cc23802da1a000f6e7942a5faad5c32e36f9886847e4baabbc39c540042ebcdb7dbdc4fa916af9a68dd670974e7b33a WHIRLPOOL 9c2a72b98e98c487c07d9104e2db981bb3aeb5d01da6b0b09942672ddf5ca590ae596a7a4a33f4c414c59df8d30dccaaa7f91f4cf323c60dd8acc381e9c73c79
+MISC ChangeLog 2582 SHA256 c84541147fe75c8c6efaf3e918e01fddee3d4825057ba682ec71cee752f342f3 SHA512 42d49bd78b9562f66e8e036432414bfb651c94df7e4ca80edfbeb58e0398b00d60e3df5e11403a0c13b42d690ddf700e0d72f6d375906d069caa16622b63545b WHIRLPOOL bde93b60fdfef21595ff1d4fc2456c907b5ba0be9fda7eb801b9a5257329977eb5f920b7444af89800e2fd70533d09e25e414d92be3a36268db1dde58a576273
+MISC ChangeLog-2015 2175 SHA256 64bb1e7d93c42de38d896c41046a5d0be2caac69f26cd454288e044df5244c9e SHA512 106962af37f72ee1cdc092edb62a0873dbb7a454bd1dfe8b11f973e8a52d6b8e2d2ac7c3003e087d1cbc60fbe9737d7c2c717f2168e470258b8b19e79b1df9c1 WHIRLPOOL 47bd675e4f27cba65c815e2fd66631cdf80427fc98fdc35c40ab1f0f9693c0440e18ee44c3494c59a4b4df29d083c31c9c3421300009b636f7059e5005cd75af
+MISC metadata.xml 846 SHA256 20a5d280b3f1fa7d3d9eadeed95a9abc19f2c513a0b4f7616e8ac24fef7acee2 SHA512 7a785ebae9232cef55c62ada47e4ec87507b6e4c7115f928fa3260474e67f56db336f7698833fe995d4f046b7013c88f62faf71758a881a86c982fe60a92c40a WHIRLPOOL 22a351a0976b9abc2fac3dced2c312021c0c6b65f3a2218e43c8e4c5ee8ca9c89e5b27016d80c5ad1a434079828b14d93f3bb26d61eebbdcf5fb7861ddc3a03c
diff --git a/sci-physics/fastjet/fastjet-3.0.3-r1.ebuild b/sci-physics/fastjet/fastjet-3.0.3-r1.ebuild
new file mode 100644
index 000000000000..a17324679e4d
--- /dev/null
+++ b/sci-physics/fastjet/fastjet-3.0.3-r1.ebuild
@@ -0,0 +1,54 @@
+# Copyright 1999-2013 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+
+EAPI=5
+
+AUTOTOOLS_AUTORECONF=yes
+
+FORTRAN_NEEDED=plugins
+
+inherit autotools-utils fortran-2 flag-o-matic
+
+DESCRIPTION="Fast implementation of several recombination jet algorithms"
+HOMEPAGE="http://www.fastjet.fr/"
+SRC_URI="${HOMEPAGE}/repo/${P}.tar.gz"
+
+LICENSE="GPL-2 QPL"
+SLOT="0"
+KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux"
+IUSE="cgal doc examples +plugins static-libs"
+
+RDEPEND="cgal? ( sci-mathematics/cgal )"
+DEPEND="${RDEPEND}
+	doc? ( app-doc/doxygen[dot] )
+	plugins? ( sci-physics/siscone )"
+
+PATCHES=( "${FILESDIR}"/${P}-system-siscone.patch )
+
+src_configure() {
+	use cgal && has_version sci-mathematics/cgal[gmp] && append-ldflags -lgmp
+	local myeconfargs=(
+		$(use_enable cgal)
+		$(use_enable plugins allplugins)
+		$(use_enable plugins allcxxplugins)
+	)
+	autotools-utils_src_configure
+}
+
+src_compile() {
+	autotools-utils_src_compile
+	if use doc; then
+		doxygen Doxyfile || die
+	fi
+}
+
+src_install() {
+	autotools-utils_src_install
+	use doc && dohtml -r html/*
+	if use examples; then
+		insinto /usr/share/doc/${PF}
+		find example \
+			-name Makefile -or Makefile.in -or Makefile.am -delete
+		doins -r example/*
+	fi
+}
diff --git a/sci-physics/fastjet/fastjet-3.0.6-r1.ebuild b/sci-physics/fastjet/fastjet-3.0.6-r1.ebuild
new file mode 100644
index 000000000000..43aa5d3d01d9
--- /dev/null
+++ b/sci-physics/fastjet/fastjet-3.0.6-r1.ebuild
@@ -0,0 +1,54 @@
+# Copyright 1999-2014 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+
+EAPI=5
+
+FORTRAN_NEEDED=plugins
+AUTOTOOLS_AUTORECONF=1
+
+inherit autotools-utils fortran-2 flag-o-matic
+
+DESCRIPTION="Fast implementation of several recombination jet algorithms"
+HOMEPAGE="http://www.fastjet.fr/"
+SRC_URI="${HOMEPAGE}/repo/${P}.tar.gz"
+
+LICENSE="GPL-2 QPL"
+SLOT="0"
+KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux"
+IUSE="cgal doc examples +plugins static-libs"
+
+RDEPEND="cgal? ( sci-mathematics/cgal )"
+DEPEND="${RDEPEND}
+	doc? ( app-doc/doxygen[dot] )
+	plugins? ( sci-physics/siscone:0= )"
+
+PATCHES=( "${FILESDIR}"/${P}-system-siscone.patch )
+
+src_configure() {
+	use cgal && \
+		has_version sci-mathematics/cgal[gmp] && append-ldflags -lgmp
+	local myeconfargs=(
+		$(use_enable cgal)
+		$(use_enable plugins allplugins)
+		$(use_enable plugins allcxxplugins)
+	)
+	autotools-utils_src_configure
+}
+
+src_compile() {
+	autotools-utils_src_compile
+	if use doc; then
+		doxygen Doxyfile || die
+	fi
+}
+
+src_install() {
+	autotools-utils_src_install
+	use doc && dohtml -r html/*
+	if use examples; then
+		insinto /usr/share/doc/${PF}
+		find example \
+			-name Makefile -or Makefile.in -or Makefile.am -delete
+		doins -r example/*
+	fi
+}
diff --git a/sci-physics/fastjet/files/fastjet-3.0.3-system-siscone.patch b/sci-physics/fastjet/files/fastjet-3.0.3-system-siscone.patch
new file mode 100644
index 000000000000..b74b8e4e9033
--- /dev/null
+++ b/sci-physics/fastjet/files/fastjet-3.0.3-system-siscone.patch
@@ -0,0 +1,83 @@
+diff -Nur fastjet-3.0.3.orig/configure.ac fastjet-3.0.3/configure.ac
+--- fastjet-3.0.3.orig/configure.ac	2012-06-25 15:15:32.000000000 +0100
++++ fastjet-3.0.3/configure.ac	2012-07-24 18:39:11.000000000 +0100
+@@ -14,7 +14,7 @@
+ dnl  - the first macro needs to place the files in the correct 
+ dnl    dir in order to have the correct -I options for the remote build
+ dnl  - see Makefile.am for distcleaning AX_PREFIX_CONFIG_H leftovers
+-AM_CONFIG_HEADER(include/fastjet/config_raw.h:config.h.in)
++AC_CONFIG_HEADERS(include/fastjet/config_raw.h:config.h.in)
+ AX_PREFIX_CONFIG_H(include/fastjet/config_auto.h,FASTJET,include/fastjet/config_raw.h)
+ 
+ dnl check autoconf version
+@@ -252,6 +252,12 @@
+ fi
+ 
+ dnl SISCone
++AC_ARG_WITH(bundle-siscone,
++	[  --with-bundle-siscone  Build the bundled SISCone library [default=no]],
++	[bundle_siscone=$withval],
++	[bundle_siscone=no])
++AM_CONDITIONAL(BUNDLE_SISCONE, test x$bundle_siscone != xno)
++
+ ACX_CHECK_PLUGIN(SISCone, siscone, SISCONE, yes,
+ 	         [CONFIG_LIBS_PLUGINS=${CONFIG_LIBS_PLUGINS}" -lsiscone_spherical -lsiscone"
+                   CONFIG_LIBS_PLUGINS_STATIC=${CONFIG_LIBS_PLUGINS_STATIC}" \${installationdir}/lib/libsiscone.a \${installationdir}/lib/libsiscone_spherical.a"])
+diff -Nur fastjet-3.0.3.orig/example/Makefile.am fastjet-3.0.3/example/Makefile.am
+--- fastjet-3.0.3.orig/example/Makefile.am	2012-06-13 15:14:58.000000000 +0100
++++ fastjet-3.0.3/example/Makefile.am	2012-07-24 18:26:15.000000000 +0100
+@@ -43,7 +43,7 @@
+ 03_plugin_CXXFLAGS = $(AM_CXXFLAGS) $(CGAL_CPPFLAGS) -I$(srcdir)/../include
+ 03_plugin_LDADD = ../src/libfastjet.la $(CGAL_LIBS)
+ 03_plugin_CXXFLAGS += -I$(srcdir)/../plugins/SISCone -I$(srcdir)/../plugins/SISCone/siscone
+-03_plugin_LDADD += ../plugins/SISCone/libSISConePlugin.la ../plugins/SISCone/siscone/siscone/libsiscone.la ../plugins/SISCone/siscone/siscone/spherical/libsiscone_spherical.la
++03_plugin_LDADD += ../plugins/SISCone/libSISConePlugin.la
+ else
+ EXTRA_DIST += 03-plugin.cc
+ endif
+@@ -125,7 +125,7 @@
+ fastjet_areas_LDADD = ../src/libfastjet.la $(CGAL_LIBS)
+ if BUILD_PLUGIN_SISCONE
+ fastjet_areas_CXXFLAGS += -I$(srcdir)/../plugins/SISCone -I$(srcdir)/../plugins/SISCone/siscone
+-fastjet_areas_LDADD += ../plugins/SISCone/libSISConePlugin.la ../plugins/SISCone/siscone/siscone/libsiscone.la ../plugins/SISCone/siscone/siscone/spherical/libsiscone_spherical.la
++fastjet_areas_LDADD += ../plugins/SISCone/libSISConePlugin.la
+ endif
+ 
+ fastjet_timing_plugins_SOURCES = fastjet_timing_plugins.cc CmdLine.cc
+@@ -135,7 +135,7 @@
+ fastjet_timing_plugins_LDADD += ../tools/libfastjettools.la 
+ if BUILD_PLUGIN_SISCONE
+ fastjet_timing_plugins_CXXFLAGS += -I$(srcdir)/../plugins/SISCone -I$(srcdir)/../plugins/SISCone/siscone
+-fastjet_timing_plugins_LDADD += ../plugins/SISCone/libSISConePlugin.la ../plugins/SISCone/siscone/siscone/libsiscone.la ../plugins/SISCone/siscone/siscone/spherical/libsiscone_spherical.la
++fastjet_timing_plugins_LDADD += ../plugins/SISCone/libSISConePlugin.la
+ endif
+ if BUILD_PLUGIN_CDFCONES
+ fastjet_timing_plugins_CXXFLAGS += -I$(srcdir)/../plugins/CDFCones
+diff -Nur fastjet-3.0.3.orig/plugins/SISCone/Makefile.am fastjet-3.0.3/plugins/SISCone/Makefile.am
+--- fastjet-3.0.3.orig/plugins/SISCone/Makefile.am	2012-06-13 15:14:51.000000000 +0100
++++ fastjet-3.0.3/plugins/SISCone/Makefile.am	2012-07-24 18:36:56.000000000 +0100
+@@ -1,11 +1,22 @@
+-SUBDIRS = siscone fastjet .
++SUBDIRS = fastjet .
+ 
+ if MONOLITHIC_PLUGINS
+ noinst_LTLIBRARIES = libSISConePlugin.la
+ else
+ lib_LTLIBRARIES = libSISConePlugin.la
+ endif
+-libSISConePlugin_la_CXXFLAGS = $(AM_CXXFLAGS) -I$(srcdir) -I$(srcdir)/siscone -I$(srcdir)/../../include
++libSISConePlugin_la_CXXFLAGS = $(AM_CXXFLAGS) -I$(srcdir) -I$(srcdir)/../../include
++
++if BUNDLE_SISCONE
++SUBDIRS += siscone
++libSISConePlugin_la_CXXFLAGS += -I$(srcdir)/siscone
++libSISConePlugin_la_LIBADD = \
++	$(top_builddir)/plugins/SISCone/siscone/siscone/libsiscone.la \
++	$(top_builddir)/plugins/SISCone/siscone/siscone/spherical/libsiscone_spherical.la
++else
++libSISConePlugin_la_LIBADD = -lsiscone -lsiscone_spherical
++endif
++
+ libSISConePlugin_la_SOURCES = SISConePlugin.cc SISConeSphericalPlugin.cc
+ 
+ EXTRA_DIST = makefile.static
diff --git a/sci-physics/fastjet/files/fastjet-3.0.6-system-siscone.patch b/sci-physics/fastjet/files/fastjet-3.0.6-system-siscone.patch
new file mode 100644
index 000000000000..d3995473fe54
--- /dev/null
+++ b/sci-physics/fastjet/files/fastjet-3.0.6-system-siscone.patch
@@ -0,0 +1,74 @@
+diff -Nur fastjet-3.0.6.orig/configure.ac fastjet-3.0.6/configure.ac
+--- fastjet-3.0.6.orig/configure.ac	2014-05-06 10:29:55.240632504 -0700
++++ fastjet-3.0.6/configure.ac	2014-05-06 10:36:20.156246416 -0700
+@@ -261,6 +261,12 @@
+ fi
+ 
+ dnl SISCone
++AC_ARG_WITH(bundle-siscone,
++	[  --with-bundle-siscone  Build the bundled SISCone library [default=no]],
++	[bundle_siscone=$withval],
++	[bundle_siscone=no])
++AM_CONDITIONAL(BUNDLE_SISCONE, test x$bundle_siscone != xno)
++
+ ACX_CHECK_PLUGIN(SISCone, siscone, SISCONE, yes,
+ 	         [CONFIG_LIBS_PLUGINS=${CONFIG_LIBS_PLUGINS}" -lsiscone_spherical -lsiscone"
+                   CONFIG_LIBS_PLUGINS_STATIC=${CONFIG_LIBS_PLUGINS_STATIC}" \${installationdir}/lib/libsiscone.a \${installationdir}/lib/libsiscone_spherical.a"])
+diff -Nur fastjet-3.0.6.orig/example/Makefile.am fastjet-3.0.6/example/Makefile.am
+--- fastjet-3.0.6.orig/example/Makefile.am	2014-05-06 10:29:55.239632499 -0700
++++ fastjet-3.0.6/example/Makefile.am	2014-05-06 10:36:20.156246416 -0700
+@@ -43,7 +43,7 @@
+ 03_plugin_CXXFLAGS = $(AM_CXXFLAGS) $(CGAL_CPPFLAGS) -I$(srcdir)/../include
+ 03_plugin_LDADD = ../src/libfastjet.la $(CGAL_LIBS)
+ 03_plugin_CXXFLAGS += -I$(srcdir)/../plugins/SISCone -I$(srcdir)/../plugins/SISCone/siscone
+-03_plugin_LDADD += ../plugins/SISCone/libSISConePlugin.la ../plugins/SISCone/siscone/siscone/libsiscone.la ../plugins/SISCone/siscone/siscone/spherical/libsiscone_spherical.la
++03_plugin_LDADD += ../plugins/SISCone/libSISConePlugin.la
+ else
+ EXTRA_DIST += 03-plugin.cc
+ endif
+@@ -125,7 +125,7 @@
+ fastjet_areas_LDADD = ../src/libfastjet.la $(CGAL_LIBS)
+ if BUILD_PLUGIN_SISCONE
+ fastjet_areas_CXXFLAGS += -I$(srcdir)/../plugins/SISCone -I$(srcdir)/../plugins/SISCone/siscone
+-fastjet_areas_LDADD += ../plugins/SISCone/libSISConePlugin.la ../plugins/SISCone/siscone/siscone/libsiscone.la ../plugins/SISCone/siscone/siscone/spherical/libsiscone_spherical.la
++fastjet_areas_LDADD += ../plugins/SISCone/libSISConePlugin.la
+ endif
+ 
+ fastjet_timing_plugins_SOURCES = fastjet_timing_plugins.cc CmdLine.cc
+@@ -135,7 +135,7 @@
+ fastjet_timing_plugins_LDADD += ../tools/libfastjettools.la 
+ if BUILD_PLUGIN_SISCONE
+ fastjet_timing_plugins_CXXFLAGS += -I$(srcdir)/../plugins/SISCone -I$(srcdir)/../plugins/SISCone/siscone
+-fastjet_timing_plugins_LDADD += ../plugins/SISCone/libSISConePlugin.la ../plugins/SISCone/siscone/siscone/libsiscone.la ../plugins/SISCone/siscone/siscone/spherical/libsiscone_spherical.la
++fastjet_timing_plugins_LDADD += ../plugins/SISCone/libSISConePlugin.la
+ endif
+ if BUILD_PLUGIN_CDFCONES
+ fastjet_timing_plugins_CXXFLAGS += -I$(srcdir)/../plugins/CDFCones
+diff -Nur fastjet-3.0.6.orig/plugins/SISCone/Makefile.am fastjet-3.0.6/plugins/SISCone/Makefile.am
+--- fastjet-3.0.6.orig/plugins/SISCone/Makefile.am	2014-05-06 10:29:55.250632584 -0700
++++ fastjet-3.0.6/plugins/SISCone/Makefile.am	2014-05-06 10:36:20.156246416 -0700
+@@ -1,11 +1,22 @@
+-SUBDIRS = siscone fastjet .
++SUBDIRS = fastjet .
+ 
+ if MONOLITHIC_PLUGINS
+ noinst_LTLIBRARIES = libSISConePlugin.la
+ else
+ lib_LTLIBRARIES = libSISConePlugin.la
+ endif
+-libSISConePlugin_la_CXXFLAGS = $(AM_CXXFLAGS) -I$(srcdir) -I$(srcdir)/siscone -I$(srcdir)/../../include
++libSISConePlugin_la_CXXFLAGS = $(AM_CXXFLAGS) -I$(srcdir) -I$(srcdir)/../../include
++
++if BUNDLE_SISCONE
++SUBDIRS += siscone
++libSISConePlugin_la_CXXFLAGS += -I$(srcdir)/siscone
++libSISConePlugin_la_LIBADD = \
++	$(top_builddir)/plugins/SISCone/siscone/siscone/libsiscone.la \
++	$(top_builddir)/plugins/SISCone/siscone/siscone/spherical/libsiscone_spherical.la
++else
++libSISConePlugin_la_LIBADD = -lsiscone -lsiscone_spherical
++endif
++
+ libSISConePlugin_la_SOURCES = SISConePlugin.cc SISConeSphericalPlugin.cc
+ 
+ EXTRA_DIST = makefile.static
diff --git a/sci-physics/fastjet/metadata.xml b/sci-physics/fastjet/metadata.xml
new file mode 100644
index 000000000000..d4c5f71dd1d3
--- /dev/null
+++ b/sci-physics/fastjet/metadata.xml
@@ -0,0 +1,21 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
+<pkgmetadata>
+<maintainer type="project">
+  <email>sci-physics@gentoo.org</email>
+  <name>Gentoo Physics Project</name>
+</maintainer>
+<longdescription lang="en">
+  The FastJet package provides a fast implementation of the
+  longitudinally invariant kt longitudinally invariant inclusive
+  Cambridge/Aachen and anti-kt jet finders and a uniform interface
+  to external jet finders (notably SISCone) via a plugin
+  mechanism. It also includes tools for calculating jet areas and
+  performing background (pileup/UE) subtraction.
+</longdescription>
+<use>
+  <flag name="plugins"> Build all standard and C++ plugins </flag>
+  <flag name="cgal"> Use <pkg>sci-mathematics/cgal</pkg> instead of
+  bundled algorithms</flag>
+</use>
+</pkgmetadata>