gentoo auto-resync : 22:01:2024 - 22:48:12

6 files changed, 0 insertions, 330 deletions

diff --git a/sci-mathematics/Manifest.gz b/sci-mathematics/Manifest.gz
index a92b524d9dca..ed31110bc625 100644
--- a/sci-mathematics/Manifest.gz
+++ b/sci-mathematics/Manifest.gz
diff --git a/sci-mathematics/nauty/Manifest b/sci-mathematics/nauty/Manifest
index f106f8b5d8f4..8008e0bfe9dc 100644
--- a/sci-mathematics/nauty/Manifest
+++ b/sci-mathematics/nauty/Manifest
@@ -1,9 +1,5 @@
-AUX nauty-2.8.6-gentreeg-gentourng.patch 3005 BLAKE2B be0473d69c5be8ed74ed4291fd8307d5a3e347506aeea3293c3b9f10ce9484b76ec2db151fed2d035e81b47e95642afd281210a8d180bf1ca3f4bec761b6c93a SHA512 7d1da82d956a73f72a3f4b198537734734332ea9152d0b006c53cd84f9469179b705fb5c2da73c677beb7a4405403022e084f2118eac76beff0a8fa994f33ad7
 DIST nauty-includes.patch 2530 BLAKE2B 8789bc2f65b89aa3bbf27e517f1c56340f9bde089ef54aa28757c66c3954b5c54e8a09b6989ad8d57098970240dd1838baa0003766fe10c7f6c32041abf461e3 SHA512 d11f530fecb86edc9e95f0b4d91240778047c0e84d6259c80490358baf0a3eeaa112acfe1fcdb594da6c6e17855f5e21cb75c88446b8d6d9e96402be0e5e6af2
-DIST nauty2_8_6.tar.gz 1546765 BLAKE2B be8aa8ef816c8833a79876e6bf99b0dc4a23922f48684c8a3272c01b0b4eb64959366cae363fbda4200354a0833942b64e85c009fc35a3d6fa02f9b74c9b9a74 SHA512 9bc597d4341a6a67aece0ad95ecd4a649f675def73e97af1d215cf7399cbd3fb8e39f140cbd6f69740f2083c7a5739d5089e746bb3f831250709e0d2b43548b5
 DIST nauty2_8_8.tar.gz 2302360 BLAKE2B 4a37b345b239de11948d180f306e984dfec4aa26eb2720d0f0f09acd120a60b4f678375baa10d3f64f3e2f501c35cbfa58e10fc44252eb7b952a1592727a3b7f SHA512 c0495256b92b0742e7f0a3ad8b43f400e7b4bc4b58dff560e7d0a868f392b0462424566b8ebba5ec08499551eab091b6a8e2c0ddba4953ab7592906034812c18
-DIST nauty_2.8.6+ds-1.debian.tar.xz 62852 BLAKE2B fcbbed54b10d9dd4bdf82d8a72ef91866a235c7679266b8f395e2fe6b44a679e98f85462a42037094d856130d5456d9989749c416932f895bc17df8ef32241a2 SHA512 3784e0ec15c64ea6850f9198c61af3924fcedf1ffa4715fbd53a9bd1cd7defd69b543a8d4e6d46ef727918661409e2de77c89c3ca79f36769c1335b30bdd305c
 DIST nauty_2.8.8+ds-1.debian.tar.xz 65176 BLAKE2B 3615819098169caf1648271c0725e146c87ab794776c02f5bd77b7092a2c1d9b93d663ef4a9cf027fda956d40f24bb99a909f89a4564b99429b67f781d39cfc2 SHA512 f81aa3c4a142c4efa5ce97c241f95cba9916d49f02c2b3dfbd76227f2db20ec5e2a3ebe371c5748681fc3492df9ff9bca2456d76e1c70e435aa5baf1522391d5
-EBUILD nauty-2.8.6-r1.ebuild 1809 BLAKE2B 8d68bbb927ba796d1a366bd0480bf19cba44ffe942dadf25868ce2fd6bf793cd923aaca064260477f53e2f16e53c2b3b68d52afa6e1e7276045347f539849d3c SHA512 31d01361a5c594d085533338297c72b6375409ffb3f78de693bdca8088232de89f3bde12acf0f88f27b6dc5877755286f1356df35b6635c4ddc73a2d2019cce3
 EBUILD nauty-2.8.8.ebuild 1955 BLAKE2B 44fdce9e00cc86fa9f2b31fbf3119ddcc29366dcd7d6e3c54b261dc185d780b3f3ca0d6ad8906e1bc260a385109b7738f990b413b9ef41513674dde6ecb1bf60 SHA512 f8c27dc70c207669eb8b9efb7caa38d7d7144e54e3fe192a8bc416469c2d904c4e22c81a808fb8400cacd1188f004467086c80b495a24e95486dbb64cd44711d
 MISC metadata.xml 554 BLAKE2B a6fbface4e867c9299680da9d2fefce4194771220489b4d9a81d295bbf1a8048fe1bf23e3c3225501a18b23af8a7daea3533f8a7c250afc7f9a4bbbf60fc8efd SHA512 c7b67c8516b9bad6cd9f60a54b3b3a4974a72e81071f53cd6562a5bea2e2b8ae990119e4391615dd3b2e30282bf70924c4f2f4b5ccd3dcf1cb7399e7de189387
diff --git a/sci-mathematics/nauty/files/nauty-2.8.6-gentreeg-gentourng.patch b/sci-mathematics/nauty/files/nauty-2.8.6-gentreeg-gentourng.patch
deleted file mode 100644
index 322b25326ee0..000000000000
--- a/sci-mathematics/nauty/files/nauty-2.8.6-gentreeg-gentourng.patch
+++ /dev/null
@@ -1,144 +0,0 @@
-From edb0474a4db8e69f971e4eebe18716309f5a7bb3 Mon Sep 17 00:00:00 2001
-From: Michael Orlitzky <michael@orlitzky.com>
-Date: Tue, 17 Jan 2023 19:44:49 -0500
-Subject: [PATCH 1/1] Upstream fixes for gentreeg and gentourng.
-
-https://mailman.anu.edu.au/pipermail/nauty/2023-January/000903.html
----
- gentourng.c |  2 +-
- gentreeg.c  | 95 ++++++++++++++++++++++++++++-------------------------
- 2 files changed, 51 insertions(+), 46 deletions(-)
-
-diff --git a/gentourng.c b/gentourng.c
-index 634e5e8..5c7ffff 100644
---- a/gentourng.c
-+++ b/gentourng.c
-@@ -1408,7 +1408,7 @@ PLUGIN_INIT
-                 (*outproc)(outfile,g,1);
-             }
-         }
--        else
-+        else if (!connec || maxn != 2)
-         {
-             makeleveldata();
- 
-diff --git a/gentreeg.c b/gentreeg.c
-index 946d5f8..15bf87b 100644
---- a/gentreeg.c
-+++ b/gentreeg.c
-@@ -1,4 +1,4 @@
--/* gentree version 1.3; Brendan McKay Oct 2022 */
-+/* gentree version 1.4; Brendan McKay Dec 2022 */
- /* This program is a wrapper for the program FreeTrees.c written
-  * by Gang Li & Frank Ruskey.  See below for their original
-  * comments. */
-@@ -32,49 +32,54 @@ Counts for n=1..45:
-  1: 1
-  2: 1
-  3: 1
-- 4: 1
-- 5: 2
-- 6: 3
-- 7: 6
-- 8: 11
-- 9: 23
--10: 47
--11: 106
--12: 235
--13: 551
--14: 1301
--15: 3159
--16: 7741
--17: 19320
--18: 48629
--19: 123867
--20: 317955
--21: 823065
--22: 2144505
--23: 5623756
--24: 14828074
--25: 39299897
--26: 104636890
--27: 279793450
--28: 751065460
--29: 2023443032
--30: 5469566585
--31: 14830871802
--32: 40330829030
--33: 109972410221
--34: 300628862480
--35: 823779631721
--36: 2262366343746
--37: 6226306037178
--38: 17169677490714
--39: 47436313524262
--40: 131290543779126
--41: 363990257783343
--42: 1010748076717151
--43: 2810986483493475
--44: 7828986221515605
--45: 21835027912963086
--********************************/
-+ 4: 2
-+ 5: 3
-+ 6: 6
-+ 7: 11
-+ 8: 23
-+ 9: 47
-+10: 106
-+11: 235
-+12: 551
-+13: 1301
-+14: 3159
-+15: 7741
-+16: 19320
-+17: 48629
-+18: 123867
-+19: 317955
-+20: 823065
-+21: 2144505
-+22: 5623756
-+23: 14828074
-+24: 39299897
-+25: 104636890
-+26: 279793450
-+27: 751065460
-+28: 2023443032
-+29: 5469566585
-+30: 14830871802
-+31: 40330829030
-+32: 109972410221
-+33: 300628862480
-+34: 823779631721
-+35: 2262366343746
-+36: 6226306037178
-+37: 17169677490714
-+38: 47436313524262
-+39: 131290543779126
-+40: 363990257783343
-+41: 1010748076717151
-+42: 2810986483493475
-+43: 7828986221515605
-+44: 21835027912963086
-+45: 60978390985918906
-+46: 170508699155987862
-+47: 477355090753926460
-+48: 1337946100045842285
-+49: 3754194185716399992
-+50: 10545233702911509534
-+*******************************/
- 
- /* Comments on original program by original authors */
- /*==============================================================*/
-@@ -676,7 +681,7 @@ PLUGIN_INIT
-         }
-         else if (nv == 2)
-         {
--            if (res == 0 && maxdeg >= 1 && mindiam <= 1 && maxdiam >= 2)
-+            if (res == 0 && maxdeg >= 1 && mindiam <= 1 && maxdiam >= 1)
-             {
-                 par[1] = 0;
-                 par[2] = 1;
--- 
-2.38.2
-
diff --git a/sci-mathematics/nauty/nauty-2.8.6-r1.ebuild b/sci-mathematics/nauty/nauty-2.8.6-r1.ebuild
deleted file mode 100644
index 680f026d9f50..000000000000
--- a/sci-mathematics/nauty/nauty-2.8.6-r1.ebuild
+++ /dev/null
@@ -1,72 +0,0 @@
-# Copyright 1999-2023 Gentoo Authors
-# Distributed under the terms of the GNU General Public License v2
-
-EAPI=8
-
-inherit autotools
-
-MY_PV=${PV//./_}
-DEBIAN_PATCH_VERSION=1
-
-DESCRIPTION="Computing automorphism groups of graphs and digraphs"
-HOMEPAGE="https://pallini.di.uniroma1.it/"
-
-SRC_URI="https://pallini.di.uniroma1.it/${PN}${MY_PV}.tar.gz
-	mirror://debian/pool/main/${PN:0:1}/${PN}/${PN}_${PV}+ds-${DEBIAN_PATCH_VERSION}.debian.tar.xz
-	https://src.fedoraproject.org/rpms/nauty/raw/f35/f/nauty-includes.patch"
-
-LICENSE="Apache-2.0"
-SLOT="0"
-KEYWORDS="amd64 ~arm ~riscv ~x86"
-IUSE="cpu_flags_x86_popcnt examples"
-
-BDEPEND="sys-apps/help2man"
-DEPEND="dev-libs/gmp:0
-	sys-libs/zlib
-	sci-mathematics/cliquer"
-RDEPEND="${DEPEND}"
-
-S="${WORKDIR}/${PN}${MY_PV}"
-
-DOCS=( schreier.txt formats.txt changes24-28.txt )
-
-PATCHES=(
-	"${FILESDIR}/${P}-gentreeg-gentourng.patch"
-	"${WORKDIR}/debian/patches/upstream-fix-gt_numorbits.patch"
-	"${WORKDIR}/debian/patches/upstream-C2help2man.patch"
-	"${WORKDIR}/debian/patches/upstream-autotoolization.patch"
-	"${DISTDIR}/nauty-includes.patch"
-	"${WORKDIR}/debian/patches/unbundle-cliquer.patch"
-	"${WORKDIR}/debian/patches/upstream-zlib-dimacs2g.patch"
-	"${WORKDIR}/debian/patches/fall-off.patch"
-	"${WORKDIR}/debian/patches/format.patch"
-)
-
-src_prepare() {
-	default
-	rm makefile || die
-
-	# The debian patch looks for <cliquer.h>, but the autotools-form of
-	# cliquer installs that header as <cliquer/cliquer.h>.
-	sed -e 's~<cliquer\.h>~<cliquer/cliquer\.h>~' -i nautycliquer.h || die
-
-	eautoreconf
-}
-
-src_configure() {
-	econf --disable-static \
-		  --enable-tls \
-		  --enable-generic \
-		  $(use_enable cpu_flags_x86_popcnt popcnt)
-}
-
-src_install() {
-	default
-
-	if use examples; then
-		docinto examples
-		dodoc nautyex*.c
-	fi
-
-	find "${ED}" -name '*.la' -delete || die
-}
diff --git a/sci-mathematics/singular/Manifest b/sci-mathematics/singular/Manifest
index 89e1137407eb..34b980975d41 100644
--- a/sci-mathematics/singular/Manifest
+++ b/sci-mathematics/singular/Manifest
@@ -1,6 +1,4 @@
 AUX 60singular-gentoo.el 298 BLAKE2B 5b42e2083037e2ff2ace5597ddebfb079920e09ed91d1a359e058fc654c6778456174d6cee9242f7fcaf81bf1464f47f43604b9e4eb298f051c6a4daba4630ca SHA512 4c17a25d91c085e12f26441fcde858e61bf191bd7d9dcf63ff5b5a1dce1d63e3f7c4f78ce8afa4f2359ad4ba6eb51f3e224ae6c502b18f5f7a76738534337431
-DIST singular-4.3.2p1.tar.gz 15013729 BLAKE2B 00276f2417cd9e2b71afcae66c2aeb7f9d4f434f5a90deeee56dded66e6d5e0020ab0b06b6561e41f5b196262993732ffeb9196f59315f1b6a081b0029fc99a1 SHA512 451054a0bf33b9d1c94a63f0946e1eb7b3e7b92bc025b6aa4f64e65183aeebd6354bac5f87f6e8b35cb713b30e97af5c66f92f02683144bb426f5e3a828db616
 DIST singular-4.3.2p10.tar.gz 20848377 BLAKE2B 2487eb40c70dca516eca94585c59be0ebfeb43edce87dd16a2874bbefbe502fadcfda1164922ab7738a257e59f9e6b6535b7447702d325b36f1358ed5048c7dd SHA512 9b914e8db2c4936184594200b07d37fc952a1399c3accb1ed30ec4a4b450afd3e3c174343e1169520d0d1ed6ac2e6d261fbbb731082e07b7caced4b5790f295e
-EBUILD singular-4.3.2_p1.ebuild 2551 BLAKE2B 65116423b404e74eb298d63eaa7c7c738b0017c602d0888505c5eba006b79025eaf0bd8f0d40139e61d90eb0ffa2849756dee441345b877d804a642d608f92af SHA512 29cd552c1bdbc76c1b299a51c7168a818f18c3871ba1c0f9763ab6f5a91a6b072e1c6ae43392f30e2b67e43d4b15e72efc304459aabb133c613b7bfad8a80e27
 EBUILD singular-4.3.2_p10.ebuild 2487 BLAKE2B b738c3bb20952ed31fb5e97e3f46a02ed3cde8d7e18ded205b1aa9a5d8da3c26bee066b7c2d2822fb611a689ce8ee0d69fe142ea54e839b2f71a139faf9671de SHA512 96007dfebb742b906b7fbad4f61dac17a2cd5910e01033b4dbde094ba21c3995251a775160c25e9406e1077f4a448d38ba22c97142d38f3f6db493d83f61cfdc
 MISC metadata.xml 862 BLAKE2B a6e991149cb925158806177b1b4a76da2b747b3273b395c14455993a99f4cf83de141980303a068b9068983b8adf4da884b81e80546a3d2dd162f188dc759385 SHA512 9e40cf7b3841bcf8289f24903e392df2a812b6d815f71da41d95a81bb89f493ab1afcef749ef47960ba683dc3433d2c4488015990806dde0b560ffe3bb6ca545
diff --git a/sci-mathematics/singular/singular-4.3.2_p1.ebuild b/sci-mathematics/singular/singular-4.3.2_p1.ebuild
deleted file mode 100644
index 9538852d6efb..000000000000
--- a/sci-mathematics/singular/singular-4.3.2_p1.ebuild
+++ /dev/null
@@ -1,108 +0,0 @@
-# Copyright 1999-2023 Gentoo Authors
-# Distributed under the terms of the GNU General Public License v2
-
-EAPI=8
-
-inherit elisp-common
-
-MY_PN=Singular
-MY_PV=$(ver_rs 3 '')
-# Consistency is different...
-MY_DIR2=$(ver_cut 1-3 ${PV})
-MY_DIR=$(ver_rs 1- '-' ${MY_DIR2})
-
-DESCRIPTION="Computer algebra system for polynomial computations"
-HOMEPAGE="https://www.singular.uni-kl.de/ https://github.com/Singular/Singular"
-SRC_URI="https://www.singular.uni-kl.de/ftp/pub/Math/${MY_PN}/SOURCES/${MY_DIR}/${PN}-${MY_PV}.tar.gz"
-S="${WORKDIR}/${PN}-${MY_DIR2}"
-
-# Most files say "version 2 or version 3 of the License," which is not
-# quite GPL-2+, and is why we have listed GPL-2 below. But AFAIK there
-# are no GPL-2-only files.
-LICENSE="BSD GPL-2 GPL-2+ GPL-3"
-SLOT="0"
-KEYWORDS="amd64 ~ppc ~riscv ~x86 ~x86-linux"
-IUSE="emacs examples polymake +readline static-libs"
-
-# The interactive help uses "info" from sys-apps/texinfo.
-RDEPEND="
-	dev-lang/perl
-	dev-libs/gmp:0
-	dev-libs/ntl:=
-	sci-libs/cddlib
-	sci-mathematics/flint
-	sys-apps/texinfo
-	emacs? ( >=app-editors/emacs-23.1:* )
-	polymake? ( sci-mathematics/polymake )
-	readline? ( sys-libs/readline )
-"
-DEPEND="${RDEPEND}"
-
-SITEFILE=60${PN}-gentoo.el
-
-src_configure() {
-	local myconf=(
-		--disable-debug
-		--disable-doc
-		--disable-optimizationflags
-		--disable-pyobject-module
-		--disable-python
-		--disable-python-module
-		--disable-python_module
-		--enable-factory
-		--enable-gfanlib
-		--enable-libfac
-		--with-flint
-		--with-gmp
-		--with-libparse
-		--with-ntl
-		--without-python
-		--without-pythonmodule
-		$(use_enable emacs)
-		$(use_enable polymake polymake-module)
-		$(use_enable static-libs static)
-		$(use_with readline)
-	)
-	econf "${myconf[@]}"
-}
-
-src_compile() {
-	default
-
-	if use emacs; then
-		pushd "${S}"/emacs
-		elisp-compile *.el || die "elisp-compile failed"
-		popd
-	fi
-}
-
-src_install() {
-	# Do not compress singular's info file (singular.hlp)
-	# some consumer of that file do not know how to deal with compression
-	docompress -x /usr/share/info
-
-	default
-
-	dosym Singular /usr/bin/"${PN}"
-
-	# purge .la file
-	find "${ED}" -name '*.la' -delete || die
-}
-
-src_test() {
-	# SINGULAR_PROCS_DIR need to be set to "" otherwise plugins from
-	# an already installed version of singular may be used and cause segfault
-	# See https://github.com/Singular/Sources/issues/980
-	SINGULAR_PROCS_DIR="" emake check
-}
-
-pkg_postinst() {
-	einfo "Additional functionality can be enabled by installing"
-	einfo "sci-mathematics/4ti2"
-
-	use emacs && elisp-site-regen
-}
-
-pkg_postrm() {
-	use emacs && elisp-site-regen
-}