gentoo auto-resync : 24:11:2024 - 03:02:54

10 files changed, 216 insertions, 70 deletions

diff --git a/sci-mathematics/Manifest.gz b/sci-mathematics/Manifest.gz
index ffebaf665136..7735e5e70b1e 100644
--- a/sci-mathematics/Manifest.gz
+++ b/sci-mathematics/Manifest.gz
diff --git a/sci-mathematics/cgal/Manifest b/sci-mathematics/cgal/Manifest
index f71e89bbd48a..485ec9eff488 100644
--- a/sci-mathematics/cgal/Manifest
+++ b/sci-mathematics/cgal/Manifest
@@ -4,8 +4,11 @@ DIST CGAL-5.6.1-doc_html.tar.xz 55148128 BLAKE2B 526d71be5c474570f5d17734a0931ec
 DIST CGAL-5.6.1.tar.xz 24893904 BLAKE2B 51abb85af785a6428893df282ce8e8dd6f2aed705d89b057e52f08e4cc42bf2696f676553bd89adb5178915b980b2566bae61bc9809ba58913b9244dac26034d SHA512 34b0b5958253fd4bcfd83ec40d3232bcd1f3ee4c07739ad3e19bf97104c628d10601909cc2343e48fceca0407a41f2c31a686b182b795e471a9a02f1964574f0
 DIST CGAL-5.6.tar.xz 24874364 BLAKE2B 556c05177f8b3bcecfd16f2bd38cb6505ab04fb41f1fdcfc97a300f539c7642c3529c75cbe29fd6186b329b3ea844698e752d04690d010a7a5c3f5b6ad3a141f SHA512 1d91ad870b63bce36e060c0de7fa2e7ab98f9d9f6cf7c94d91a6677db237f50c28f8fc49f24bef943b2adcb5a4a8acf01dd94092a97024c33413763348131ea4
 DIST CGAL-6.0-doc_html.tar.xz 59969836 BLAKE2B 4b1a64767e4fba2cd99ff79c361a155a4fd96feac016bf2e556a68eedbef97565db5f3cd58cfc862fbadb7aa0c8ce7bbe85fd7c0a6e17554e384f09004792f3c SHA512 38d77f14bb3ec3fcdec9f8a951970ed843a7171d3cb3bfeb9d4bf5b8312857ba405ec71afcb04bbc4c703286c66ce364c7f0383831aa46b2ef3a6cf30ad2ab15
+DIST CGAL-6.0.1-doc_html.tar.xz 59971752 BLAKE2B 050f078d7c56b5a9044b319f35c9602fdab68cc371c1255af37866794fd26b498552275ad1ad4578a3a5ab6fa0d09afaa53e24af602fea0d0d05b8b6d6c1ad41 SHA512 df623bbaeabacc2a8391ff0b2ba7fdaabb078eb95a9e691ad24a2a66a6bd863fca798e76a1d03f9af01ef0acc981654cbb9eecc7f627deb9c4fcec9ec671cbc3
+DIST CGAL-6.0.1.tar.xz 25659212 BLAKE2B 48a707b74f6fc823197e60ae9643001ff24efcb7adfcb325018ee54ce538ef5f356f19fb2e979c2b2cd5fb0945590d37abe3f41bae4a511c9c88e83edab03422 SHA512 f3dfd8f872d5ac016f6e2e1ae83a0c070fc352c1d97dd5012f774e708401a8ad7e78bc117a48dbc799aba49d6bd537470c35a52956d9484f877df72497cfc23d
 DIST CGAL-6.0.tar.xz 25979696 BLAKE2B dfc7785cc6398334b877a8839c2ea20e4540663f86230d54b45771519cf2ade31bb943e512714b72e5bc5af80978cfe9833332bbb1a75fa009de9d6caf6c8f89 SHA512 3c7aa6e5a014867cc2a2038c96ab7f62ab735d678efc580cc498fa27209cd338c4bba9524ea90d4dd88442e4df648791b83c465e7319ae5870f8c3c8827128e7
 EBUILD cgal-5.6.1.ebuild 1238 BLAKE2B 8094fe3fadccc096665fd7898c2efc7d5d6644e0353b2e6a704aebe1656cb159e30a8eaa17aa9b026f9a62f7f059415c4915a93e45337413b528ce4507f78f39 SHA512 7373abbe5b5d4348a71675b676176e0edc11a56e1c8c24b037ef3f2b5b77e3023a7f6a7ba976e79b7da496e0ea9e5c001aab7b8899d65a517866969a78696bf5
 EBUILD cgal-5.6.ebuild 1248 BLAKE2B 85bf70631e6dbc0adb5aa26d52ee6f5948d8ae1f59f0db773a47d41eec88d50aabc5f61b6977e8fadcc55dcb0994d2e355551d98e1b2f5660633df99c2cdec81 SHA512 6f90f4c5b621b214a93556d19f4b1b9b4816cdc759a7d16ed12c7353b00d0b88277f6e4e4bdf39f45fc2cbf558cf03750f406a2ce5c8d642899124d19acc22bb
+EBUILD cgal-6.0.1.ebuild 1499 BLAKE2B 952f45d4e6f2357f0bb9f96b0df4e2199cf397f788054a52a8f026fbbd77cbaff77cd5f456cf9f60c2507b6423269c458ffb18088bdcaa07b7fbf853cb88cbb2 SHA512 21283d119699d2137eecc96720712c2083ec3fe2c4b269c105c58c19546ae34e86fbc720331fee031fee4403ba1234f7029a79df9c61548f1e5368d6b4ba35fa
 EBUILD cgal-6.0.ebuild 1268 BLAKE2B 4b748619cda3f713e1678bdb685c08669610558ce8744defa91884d4fb3f272699cd6ae6c3849c5fdacf702cf37ed1928dc0eb5c01af6d2e1009e8be72e6ef14 SHA512 81e4985f29bdf65486041cff05fb94064845f78a828406f3084db10fab780302cdd0f230d8d6e526f17ed6dc61d91458b47ec57e5239c31ac82feed2cd4e5ba5
 MISC metadata.xml 1118 BLAKE2B ed180a3128a37bc151ce89a0edcc076b09449a43e9ce7633ac0c0343b20cdd585cf6b68dc92262730d8379b4eb0d4b26feba90327384f2e4546fba27336d96ca SHA512 c407490521df2908343dbc870684938dfe71e5f4a072f016361db9f08ebb598540c69a704ce97cf803b4e23846a18c259fc208f286f0d11d8acbadd32182142c
diff --git a/sci-mathematics/cgal/cgal-6.0.1.ebuild b/sci-mathematics/cgal/cgal-6.0.1.ebuild
new file mode 100644
index 000000000000..17cb4b0c9a50
--- /dev/null
+++ b/sci-mathematics/cgal/cgal-6.0.1.ebuild
@@ -0,0 +1,68 @@
+# Copyright 1999-2024 Gentoo Authors
+# Distributed under the terms of the GNU General Public License v2
+
+EAPI=8
+
+# Modules provided by dev-cpp/eigen
+CMAKE_REMOVE_MODULES_LIST=( FindEigen3 )
+inherit cmake
+
+MY_PV="${PV/_/-}"
+MY_P="CGAL-${PV/_/-}"
+DESCRIPTION="C++ library for geometric algorithms and data structures"
+HOMEPAGE="https://www.cgal.org/"
+SRC_URI="
+	https://github.com/CGAL/cgal/releases/download/v${MY_PV}/${MY_P}.tar.xz
+	doc? ( https://github.com/CGAL/cgal/releases/download/v${MY_PV}/${MY_P}-doc_html.tar.xz )"
+S="${WORKDIR}/${MY_P}"
+
+LICENSE="LGPL-3 GPL-3 Boost-1.0"
+SLOT="0/14"
+KEYWORDS="~amd64 ~arm64 ~ppc64 ~x86 ~amd64-linux ~x86-linux"
+IUSE="doc examples test"
+RESTRICT="!test? ( test )"
+
+RDEPEND="
+	dev-cpp/eigen
+	dev-libs/boost:=
+	dev-libs/gmp:=[cxx]
+	dev-libs/mpfr:=
+	sys-libs/zlib
+	x11-libs/libX11:=
+	virtual/glu:=
+	virtual/opengl:=
+"
+DEPEND="${RDEPEND}"
+BDEPEND="
+	app-arch/xz-utils
+	virtual/pkgconfig
+"
+
+PATCHES=(
+	"${FILESDIR}"/${PN}-4.11.1-fix-buildsystem.patch
+)
+
+src_configure() {
+	local mycmakeargs=(
+		-DCGAL_INSTALL_LIB_DIR="$(get_libdir)"
+		-DCGAL_INSTALL_CMAKE_DIR="$(get_libdir)/cmake/CGAL"
+
+		# https://github.com/CGAL/cgal/wiki/Testing#using-ctest
+		-DCGAL_ENABLE_TESTING="$(usex test)"
+		-DCGAL_TEST_SUITE="$(usex test)"
+		-DBUILD_TESTING="$(usex test)"
+		-DWITH_examples="$(usex test)"
+	)
+
+	cmake_src_configure
+}
+
+src_install() {
+	use doc && local HTML_DOCS=( "${WORKDIR}"/doc_html/. )
+
+	cmake_src_install
+
+	if use examples; then
+		dodoc -r examples demo
+	fi
+}
diff --git a/sci-mathematics/gap/Manifest b/sci-mathematics/gap/Manifest
index fc8ecc7e0985..72d1c035e64b 100644
--- a/sci-mathematics/gap/Manifest
+++ b/sci-mathematics/gap/Manifest
@@ -1,5 +1,7 @@
 AUX gap-4.13.1-hash-fixes.patch 8703 BLAKE2B 84ef5cce4ef7d71229972f60886472591a3fb1c8afb132e803e82bdcbc2a8e46a10910d99d43a3b04c7120a7c44b7b8ab04ecae4bab62035ccc1327e76c0d46e SHA512 5921dbb29361aafc7aa6a14b752d7c1736a7a4b0db01c56a4a4aa8719277d8a6a6e14116f3edd9e6764fbb449e9579f334311837d0c726e97a00bbca97f2117a
 DIST gap-4.13.1-core.tar.gz 38673913 BLAKE2B a63cbd2211430bfbf1bc9bb489a68a2ee7182858ccb326dfe5e6d3a7b8fb6a8c34b56a539c8b9cf3a22a1cc3a4ffe22d365b0e5229ba2c2b6d0ce6bacf0e645b SHA512 e3b74558c05e5963ea87aa77baba0edc068634072ff97b8ea0880289e53213eed82b01784db2675263d6f47547bfef259b80353ed2843ce90a77a0252c551919
+DIST gap-4.14.0-beta1-core.tar.gz 38686095 BLAKE2B dec27a1d04cc9a75e3d896e8e08c07ff2f1e7e27cbb2a5a302a840fd9ed878abc91c8efa5b172118adf96949491badc809e86c43bbdca0bb6a78ce47b6ae53e5 SHA512 e56d768a2a84a3ba82cfcfb4c3d9f39f862410cf32f04c1a173376c7e2ca5beb55ab7a7519388ca5e3b2f8118d604033a0c405d1bfa26bb974a7ac8c02f574ea
 EBUILD gap-4.13.1-r1.ebuild 4008 BLAKE2B a56bc5655cf450ab304fc653354c9914861269f9bec8acb933f9cb392bba5c626156745658a89e19329e2485df2bac7cffbfd03f8bbbbb4b563186dfc34c1251 SHA512 f1dcc671f350e4962ac7869650d01c037d5dc530731f84289dd323ce31068f16edc450d4375f413f83c668403c4b4ddb3d7d753ed8f983db44425195888ad24a
 EBUILD gap-4.13.1.ebuild 3952 BLAKE2B 7799ab87b5facb7cbe4934c53108a85b96725add2e61dbe0cea6fa4f5d4ef013f3d2d496da86e0d2fda2b13f1e6601fd2755d5a0671306b7d80fe14c6d599389 SHA512 53a7f462e3f7c4601a96a95a199cddc0800b187100ada6a3046aa3f502bb65f881dfc524b07676817e83ab51923c90c16ae6b7fc74f6d06a57e18cdbb5d4b0b6
+EBUILD gap-4.14.0_beta1.ebuild 3940 BLAKE2B d5b2df6c00fdfdd97a10bba50640fad285031f58d0c6306f1acb4451407304b241ceae9caf156ef6c92ed6003237608deeeee17083d139feb0db439d098520f9 SHA512 7eb3d741c955e927e7b2bc5abda6df5d2e779fd82a3317c5a574e350e1bb30bbc73a9e4ed496f12aea854f07e086b67158f41d1b1e638ed814e8e626bacbfd4f
 MISC metadata.xml 1582 BLAKE2B 9151244f139b0d675e327731c336c41d5d69c25856286c182944d57255fbb6d7b1f023195b3a01c829ff6f3ea1d5e6eb6edbcc796a30120deacde82b90b5f39c SHA512 f4490e9b13cee6604f14df39ea048d7578e080a8faa97b0bb22191a7dce56904416870ed64c289f91526087009f7488e8baed4e531c78f50a5b917e9e1684ce2
diff --git a/sci-mathematics/gap/gap-4.14.0_beta1.ebuild b/sci-mathematics/gap/gap-4.14.0_beta1.ebuild
new file mode 100644
index 000000000000..2675a4683173
--- /dev/null
+++ b/sci-mathematics/gap/gap-4.14.0_beta1.ebuild
@@ -0,0 +1,138 @@
+# Copyright 1999-2024 Gentoo Authors
+# Distributed under the terms of the GNU General Public License v2
+
+EAPI=8
+
+inherit estack
+
+DESCRIPTION="System for computational discrete algebra. Core functionality."
+HOMEPAGE="https://www.gap-system.org/"
+SRC_URI="https://github.com/gap-system/gap/releases/download/v${PV/_/-}/${P/_/-}-core.tar.gz"
+
+S="${WORKDIR}/${P/_/-}"
+
+LICENSE="GPL-2+"
+SLOT="0/9" # soname
+KEYWORDS=""
+IUSE="cpu_flags_x86_popcnt debug memcheck minimal readline test valgrind"
+REQUIRED_USE="?? ( memcheck valgrind )"
+
+RESTRICT="!test? ( test )"
+
+# The minimum set of packages needed for basic GAP operation. You can
+# actually start gap without these by passing "--bare" to it on the CLI,
+# but don't expect anything to work.
+REQUIRED_PKGS="
+	dev-gap/gapdoc
+	dev-gap/primgrp
+	dev-gap/smallgrp
+	dev-gap/transgrp"
+
+# The packages aren't really required, but GAP tries to load them
+# automatically, and will complain to the user if they fail to load.
+# The list of automatically-loaded packages is a user preference, called
+# AutoloadPackages, and the upstream default can be found in
+# lib/package.gi within the GAP source tree. Passing "-A" to GAP on the
+# CLI (or setting that user preference) will suppress the autoload
+# behavior and allow GAP to start without these, which is why we allow
+# the user to skip them with USE=minimal if he knows what he is doing.
+AUTOLOADED_PKGS="
+	dev-gap/autpgrp
+	dev-gap/alnuth
+	dev-gap/crisp
+	dev-gap/ctbllib
+	dev-gap/factint
+	dev-gap/fga
+	dev-gap/irredsol
+	dev-gap/laguna
+	dev-gap/polenta
+	dev-gap/polycyclic
+	dev-gap/resclasses
+	dev-gap/sophus
+	dev-gap/tomlib"
+
+# The test suite will fail without the "required" subset.
+BDEPEND="test? ( ${REQUIRED_PKGS} )"
+
+DEPEND="dev-libs/gmp:=
+	sys-libs/zlib
+	valgrind? ( dev-debug/valgrind )
+	readline? ( sys-libs/readline:= )"
+
+RDEPEND="${DEPEND}"
+
+# If you _really_ want to install GAP without the set of required
+# packages, use package.provided.
+PDEPEND="${REQUIRED_PKGS} !minimal? ( ${AUTOLOADED_PKGS} )"
+
+pkg_setup() {
+	if use valgrind; then
+		elog "If you enable the use of valgrind during building"
+		elog "be sure that you have enabled the proper flags"
+		elog "in gcc to support it:"
+		elog "https://wiki.gentoo.org/wiki/Debugging#Valgrind"
+	fi
+}
+
+src_prepare() {
+	# Remove these to be extra sure we don't use bundled libraries.
+	rm -r extern || die
+	rm -r hpcgap/extern || die
+
+	# The Makefile just tells you to run ./configure, which then
+	# produces a GNUmakefile.
+	rm Makefile || die
+
+	default
+}
+
+src_configure() {
+	# We unset $ABI because GAP uses it internally for something else.
+	# --without-gmp and --without-zlib both trigger an AC_MSG_ERROR
+	local myeconfargs=(
+		ABI=""
+		--with-gmp
+		--with-zlib
+		$(use_enable cpu_flags_x86_popcnt popcnt)
+		$(use_enable memcheck memory-checking)
+		$(use_enable valgrind)
+		$(use_with readline)
+		$(use_enable debug)
+	)
+	econf "${myeconfargs[@]}"
+}
+
+src_compile() {
+	# Without this, the default is a quiet build.
+	emake V=1
+}
+
+src_test() {
+	# We need to specify additional root paths because otherwise the
+	# recently-built GAP doesn't know where to look for the "required"
+	# packages (which must already be installed). The two paths we
+	# append to $S are where those packages wind up.
+	local gaproots="${S}/;"
+	gaproots+="${EPREFIX}/usr/$(get_libdir)/gap/;"
+	gaproots+="${EPREFIX}/usr/share/gap/"
+
+	# GAPARGS is a Makefile variable that exists for this purpose. We
+	# use "-A" to hide the warnings about missing autoloaded-but-not-
+	# required packages. The tee/pipefail works around a glitch in
+	# dev-gap/browse that can clobber your terminal.
+	eshopts_push -o pipefail
+	emake GAPARGS="-A -l '${gaproots}'" check | tee test-suite.log \
+		|| die "test suite failed, see test-suite.log"
+	eshopts_pop
+}
+
+src_install() {
+	default
+
+	# Manually install Makefile.gappkg
+	insinto usr/share/gap/etc
+	doins etc/Makefile.gappkg
+
+	# la files removal
+	find "${ED}" -type f -name '*.la' -delete || die
+}
diff --git a/sci-mathematics/mathlib-tools/Manifest b/sci-mathematics/mathlib-tools/Manifest
index 9eaeb4950293..ef176670a3b6 100644
--- a/sci-mathematics/mathlib-tools/Manifest
+++ b/sci-mathematics/mathlib-tools/Manifest
@@ -1,4 +1,4 @@
 AUX mathlib-tools-1.3.2-pull-131.patch 3637 BLAKE2B bf7128554dc0727c80a754081aca5fe75e5df33e1429b9b94243884209049cab57f32139c8149732a4e6bf6eb4c58b60d7adcbd100fa4d65de7c265a9d54eaee SHA512 d222078b011f3169f0fbdbc6a05a7d9593209ded23a407b9998b5f572b308d9064fec1767a26013997ca882d4f51bae9938661efd548270efdbbe8099d770151
 DIST mathlib-tools-1.3.2_p1.gh.tar.gz 36686 BLAKE2B 0120e64821c183e368a4ca7d7122146637b933c9f56279c15716c825ac6e0e20d19f8ece731ee5c4114b7c221e84b53d3b89fcc0268529cbd1f2ad3328ac7847 SHA512 7b3c5a8aea19a4c7df366c71baa19e3d8ab6a0a6b387973ed37aecf3003361f298b85a4deecc8a4fcb6a2003f666c503fd66cde986e412003d439d48345afbc7
-EBUILD mathlib-tools-1.3.2_p1.ebuild 1404 BLAKE2B fc8b31108f792b8fdc89602b705079bbfdfd0108c2d5d1d2f9f569a03968cb22dad58285edf3cf1fe519ae419c3b85f5f3bfaba614228223f5112ff4315b6a04 SHA512 61a00e48927cb97546f311ac788377a16538f9e09dec0f5ad882356be2c7858b7f0770495d9393c5cf379e8d75027207e5a75be4876ea41aede973d73239dc87
+EBUILD mathlib-tools-1.3.2_p1.ebuild 1404 BLAKE2B ce160d6858d81dee777971981be2462e44015b21ad35b43db499ae4ce3a8490e6b37936f91ed5d13ba400c04f1a8d786ff2778f22b57f2b40d806b39abc8037a SHA512 a66d9d5e3438832179fb1aff18508f8192ee9f761eb9ace87d1d46c75eca5d4bed2ec188d6d77746ce9de684bc530e8b955a75a1501e748ccfe052f58c68c447
 MISC metadata.xml 845 BLAKE2B 8d01442128f49f1c8c0c29cf4469d775936149cdde77d7e96a6825bc631119a4e83932bc67f9e60781128f0c179ef7e622edcc9836d7fb3f4240b356e92caf8b SHA512 8add0a2a70e219d5581ef7fdcd0125ab1375c65d631093df02559e462974b07cef0bf1fe75919707be026b91e77131b24d3b197a5c332961c6a573ddf899c939
diff --git a/sci-mathematics/mathlib-tools/mathlib-tools-1.3.2_p1.ebuild b/sci-mathematics/mathlib-tools/mathlib-tools-1.3.2_p1.ebuild
index 22309e782a80..80869ab68400 100644
--- a/sci-mathematics/mathlib-tools/mathlib-tools-1.3.2_p1.ebuild
+++ b/sci-mathematics/mathlib-tools/mathlib-tools-1.3.2_p1.ebuild
@@ -27,7 +27,7 @@ SLOT="0"
 
 BDEPEND="
 	>=dev-python/gitpython-2.1.11[${PYTHON_USEDEP}]
-	dev-python/PyGithub[${PYTHON_USEDEP}]
+	dev-python/pygithub[${PYTHON_USEDEP}]
 	dev-python/atomicwrites[${PYTHON_USEDEP}]
 	dev-python/certifi[${PYTHON_USEDEP}]
 	dev-python/click[${PYTHON_USEDEP}]
diff --git a/sci-mathematics/polymake/Manifest b/sci-mathematics/polymake/Manifest
index 995d91ec85b2..2cee9bf54818 100644
--- a/sci-mathematics/polymake/Manifest
+++ b/sci-mathematics/polymake/Manifest
@@ -1,8 +1,7 @@
 AUX polymake-4.11-barycentric-subdiv.patch 807 BLAKE2B e2e632146e6d96e5966444283a0226caf26dfd7dab482a35289e2b6f9acaa791db015787b4b91f5c2f3abc47323227377dd296dfc21b777315979e58d2e36af8 SHA512 f5332d3a558a0b3dc1b0cc0846131210857d2a6ad11647fd64cd5366c04c349752d06e30da3f93568ff5d2f04f8419b8c9ef6e71460e997c295cb6959a8964e1
 AUX polymake-4.11-singular-sat.patch 2212 BLAKE2B 659d07040141617f7ac6cb8572c44bf4d9ba332f1f4ddb5434987ea900009ef2b3ebefa27ead63a60c6048b58c3a853c797d82af1f3c8793f2c506f09dfd43f0 SHA512 fc46ec6753ddf14d389b9e03421a909bf572e4e7d6acf3dec7319d3bf704ba7710ba1c4719bf6b9153599f523e36cf83ac8b8218141f72a43343c94373fc5b57
-AUX polymake-4.12-no-perl-constraints.patch 1937 BLAKE2B 333d796269fdc4b733a2801b2a4dd4bb3bc88fe84570f508d8dea7288602fe6dc9f0490b48c0ee5b0478927d5ad23c8414aab7a7b4a10473a59ef8f255d79672 SHA512 40e09bfaf75bcee2087bd3660b9703a82714dc8f51ce5796098d4a4677b9eb46e252e12317b691f0aea0190c69496870351d658e52331d757caaf5ee4012fd09
 DIST polymake-4.11-minimal.tar.bz2 7325783 BLAKE2B 87e62741e4e44c5fea7454d5cc8cb205cf13f8ee743c1d72100f937d0677505ce0c5c8f5b37c118f89079ca88f313991eaefb2ea02c49b6c7b45c438c6f9e13b SHA512 94adf3fcec21de50451091a04ca17010f5e71b44e3dcd4e2d52b9f952b94ee0cf3f6df15657b761b0bda20eb47cbdc0cb2481bb440c7243442be34f913292246
-DIST polymake-4.12-minimal.tar.bz2 7337552 BLAKE2B 4893be1f04ace2c4eb95ed01bc55e62e2187e10b5b10c1d274b2d4e771e1d863b2eb7adeb9a05b2f4c14466cdce1c0d223cfcf35c125d9989ab3825a88e46464 SHA512 127d4058148fdac05fb83a3ab893edfe5c0ab6865f9745d1e709396c23af9762574616f0466adcee59d35646d807621a090a41e8cc693b1fca1f5f6cd5d01054
+DIST polymake-4.13-minimal.tar.bz2 7338096 BLAKE2B c4d60ab48cb4fd21e6ea38ccdf85086e92c1ad2b80434180c07da036de9e462439e73f05d271d1c0aa150a8eeda59b20d5314fbf8fd7b17c2eb3f0e0b0384c78 SHA512 cd281a1f293434d96efceeb02e25d23fb334fa0c0ecdf5af10489d12850dca43c05eaa36e86fbd4a0b1fab9e83b03ad694d655a8710ea5ed9f000297a4d86d50
 EBUILD polymake-4.11.ebuild 3921 BLAKE2B 6fb8ae61e88443c185c577fcb3888e5cc4d77c22d827c2f495a4c5b61f1af1165ee14b18fbedd920ce40b1fa4b13f407214519ef55328721a56f50b890e8d551 SHA512 38e33377dcb6e100bf918409a4f926b2597fa49fc4c6f1c6a04babad8c251d2e7eb9aac924f998e351908b72dbd7094b1aafb24b6d1e443ef2357daa69b5398f
-EBUILD polymake-4.12.ebuild 3883 BLAKE2B 97b31bc41c763fe11e66268139f6ff0dfa4e35405321ee1496215dce9e2db77154ae12136e0f100cbdac5ea4d07b3752eedc6b692038d4f101470175201403a5 SHA512 71123c2077af486910b903112eca9ad4ff61f290b379d60a8914215ac355306b36d2bc147201dee09ee746696a35eaaf1ba6bff84643ea1bb73d9cd981157e1a
+EBUILD polymake-4.13.ebuild 3827 BLAKE2B 177c9c6bb2ccfa739086921314e84657493fb42e7851b1479246b445ac14bd5e3c0b31a7a27e5902e46c8f0cf0799d4cbb773d45638d4e597387fc096a5aa0cd SHA512 47f6a14d7abad026c0bb6e15c8120b76e8e7ce4acb7249e3ba69d4bbdc40a65f61135a8b2a65f4d80826b0c3aa47a7d4c3a421a433c0bac77781b77a13bf735d
 MISC metadata.xml 1765 BLAKE2B 4e13dfb267c8100df81d8be89e7915ba850f55fea4256882264b13a0307c60cd8346ff46bf972018b334bf2d0dc387761244c1e0c3b8c7a1f4613a2a87458538 SHA512 7fd8af42bccc7710bd7c4159759b42ace43f638365a83defee96568e6ab4d6c186f49e71cbf68291fcd3b8b30fd7f883e8096c001c6bbf233d6f7336fa266f7c
diff --git a/sci-mathematics/polymake/files/polymake-4.12-no-perl-constraints.patch b/sci-mathematics/polymake/files/polymake-4.12-no-perl-constraints.patch
deleted file mode 100644
index 54cbb1ee0324..000000000000
--- a/sci-mathematics/polymake/files/polymake-4.12-no-perl-constraints.patch
+++ /dev/null
@@ -1,62 +0,0 @@
-From b0639eca089256c1d816b62c0e2b901cc14a5f7c Mon Sep 17 00:00:00 2001
-From: Michael Orlitzky <michael@orlitzky.com>
-Date: Wed, 28 Aug 2024 10:57:17 -0400
-Subject: [PATCH] support/configure.pl: disable perl version check
-
-The test suite apparently passes with perl-5.40, and that's what
-we have in ~arch on Gentoo, so let's accept it.
----
- support/configure.pl | 37 -------------------------------------
- 1 file changed, 37 deletions(-)
-
-diff --git a/support/configure.pl b/support/configure.pl
-index 5615c65..95f66de 100644
---- a/support/configure.pl
-+++ b/support/configure.pl
-@@ -14,43 +14,6 @@
- #  GNU General Public License for more details.
- #-------------------------------------------------------------------------------
- 
--BEGIN {
--   if ($] < 5.016) {
--      print STDERR <<".";
--polymake requires perl version not lower than 5.16;
--your perl interpreter says it is $].
--
--Please upgrade your perl installation;
--if you already have an up-to-date perl interpreter somewhere else,
--you can specify its location on the command line:
--
--./configure PERL=/path/to/my/new/perl [other options ...]
--.
--      exit(1);
--   } elsif ($] >= 5.040) {
--      print STDERR <<".";
--*************
--*** ERROR ***
--*************
--
--polymake has not been checkced for compatibility with perl 5.40 or newer;
--your perl interpreter says it is $].
--
--If you already have another (older) perl interpreter somewhere else, you can
--specify its location on the command line:
--
--./configure PERL=/path/to/my/new/perl [other options ...]
--
--You can install a custom perl version in your home directory using perlbrew
--(https://perlbrew.pl). Make sure to append '-Duseshrplib' to the install
--command if you want to use libpolymake (e.g. for the jupyter interface) and to
--install all required perl modules which are listed after running configure
--again with the new perl.
--.
--      exit(1);
--   }
--}
--
- use Config;
- use Cwd;
- use File::Path;
--- 
-2.46.0
-
diff --git a/sci-mathematics/polymake/polymake-4.12.ebuild b/sci-mathematics/polymake/polymake-4.13.ebuild
index 1022ff12e0cc..a58117a18828 100644
--- a/sci-mathematics/polymake/polymake-4.12.ebuild
+++ b/sci-mathematics/polymake/polymake-4.13.ebuild
@@ -46,15 +46,13 @@ DEPEND="
 	singular? ( sci-mathematics/singular:= )"
 
 RDEPEND="${DEPEND}
-	dev-lang/perl
+	dev-lang/perl:=
 	dev-perl/JSON
 	dev-perl/Term-ReadLine-Gnu
 	dev-perl/TermReadKey
 	dev-perl/XML-SAX
 	dev-perl/XML-Writer"
 
-PATCHES=( "${FILESDIR}/${P}-no-perl-constraints.patch" )
-
 src_configure() {
 	# Without this, the build system tries to use "the highest possible"
 	# optimization level and will override what's in your CXXFLAGS.