reinit the tree, so we can have metadata

7 files changed, 376 insertions, 0 deletions

diff --git a/sci-mathematics/snns/Manifest b/sci-mathematics/snns/Manifest
new file mode 100644
index 000000000000..193f557a0515
--- /dev/null
+++ b/sci-mathematics/snns/Manifest
@@ -0,0 +1,10 @@
+AUX 4.2-ldflags.patch 1109 SHA256 5cebf78bf106ae055bb556004dc285b5ae5362e9a1f4eea296c666be6014265b SHA512 274da0d037922c7bec246cb47a57cf63ca700345073ae0159d5636921a51370e02ed4dd18618e657477c513b2141c87a40c7082abe4fdaeb287ce42b33907033 WHIRLPOOL e206c3e530a17b0548bcb30855691f433e4802cbe1a8e2a2a793c4337281fc3d063485039771091bd1580882819edb075669398a0365ab36ec54f94cf5317e75
+AUX 4.3-bison-version.patch 463 SHA256 db71246207e413f56fbc1e673b61f09a0310d6e1e8a40eb2688da87c772c8e6b SHA512 5ad60b931e1bf79ccc023ca6fdde4ded155cf5d5d47216fec4811dc7689c95b0147dbc3210507c20ca59086f9d0e0df30b5c0a42daada549919c473176338344 WHIRLPOOL bdf02e266680efb9ec690ca19b87583b9fc8217369ace023a0a630dfefbcf7554ab9448dc807e8ce7b83bd1e3f2ade17b2e6d369c041d3ceb33848a6e7e97ae9
+AUX 4.3-snns-netperf.patch 4398 SHA256 76a022ba90dc69b1b78a0c4824c9b5a41709e9152abe5813d38a2d555863da7a SHA512 316c1121e7269adc142a0dd7b7dc9882605bc4c01cb5fa15e5b1d3de93ece31e4ff27894439e54fce6c174d763133bf7cd69b2142bfb3f030609e5e9ba5d41c1 WHIRLPOOL 93bc9758bbd87f5fb2fc284f25c2dbee8386e5be5923fb96d64372b0cfc10d2a3a450ad396495c037d1ae726566dfb93ebb0927837c69b9b56daf058f8547a03
+AUX 4.3-unstrip.patch 260 SHA256 4efb6e5fcbb130eb850bc5d0c837db6b37e78466068cf2c472082d8dd8f334d9 SHA512 9fb6826160850c4de977367a16ebfcd49667ee5bb5647a3a0441a32e58ce5e7649e25c03d4c43b71eab037ad13bdefe1668bedde691fc9883ed2e5e743856b16 WHIRLPOOL 462ad2fc58d837b92a6fafe9d7c8a34e539ae39a3074396ae0665dc6b3be846df5b6fc62a0fb95186cd0f84f715b8e76189a62e3aca47bf2ab490391caaf31a7
+DIST SNNSv4.2.Manual.pdf 2103861 SHA256 ffed74a4d63f78b8bf8a400a18ce32c3e8d8b3e89682394cc6af122c097aba62 SHA512 204ff6cf31cdf6496042b7f1b6a1a446c4050c3d4d92ff046dc4970c4f8d3872f5d3430d2f41138e5e5b64a77348b95960eba53b2c305954b68dd0e483828016 WHIRLPOOL f21891640fd4428cf20e31766fd2cc304d003aba6e2277d2dc3f724747ab688621a90e4afecfa6a3c7cb799aee0fdc00574fc7c9eb102c55031767dea703a326
+DIST SNNSv4.3.tar.gz 5076669 SHA256 54bf92d23e9198f9030a3c3d2b741472e9b8660b27d3b419ade6393b1ebf6f62 SHA512 a057dc946b581eee01334956c33d6870b8b994d1b835834d58c37ae3a8585dfb1206f3082b17a49ee97b22f4c07c0efb47e4e3ae5aeb37e97f69472da3e21f0b WHIRLPOOL 29e1afc09a6e5ba7de5fc21d2a995f7f093e02e9f6125831ce29dfeaddd125241f440b362b97af5fe0933a21455b4002f606ecdce7b13f24046d20167bd5ad7d
+EBUILD snns-4.3-r2.ebuild 2818 SHA256 a71824f8a76c511a09f546e2213e9a30bf0f59b6354195e6cc8ed9e5a65bdc07 SHA512 0cb8444ccbfa22458351e1ed5010f4a1335d42a78bfc44a58e64d414a09b139aba6f5f7d9a6471156a30fb42bc4dda6864da08e50786587382f0dd0539dfbf03 WHIRLPOOL 0b9c3860c532fffd3847cf29b77b823647bb5e5b0cc0fc1ee01478edbe759314f1ce3c73db7e1aa313eb7df85b5ad9ab0ac882fc72dcb2fee4f64c85e420830c
+MISC ChangeLog 3692 SHA256 e5f69af5c9ea181143659b8f291333da481d135547c4ffc1f94411d5aaab40e5 SHA512 743fdf6a21a363f3d2784c7c8251da849de5f1415f53b886d69058fd6a42f36d63d0820e936f7d4a22ce3c272adfa89335c2dccc8766576a8d6997c9f9dcde25 WHIRLPOOL a48f484feca399e661ee8a0955e759cb0d4ea20e3a98a455e761247474aa0cfe3415e457f615a6bf26ab773251433cfb4cd52771fc66baa80b557918968bac3e
+MISC ChangeLog-2015 6497 SHA256 7fae9e1502614d953eecda1505207d4b0ee076dc2ec956dcd9a1d3bfcf25815b SHA512 50bf8afa509f15e3cff6b3b3606ab98ecbd04bc7f65259e46e8c4d89f41874502eb6cb51b5c132b9fa9a9c7dbd10ccd2e175457f707d0ae8d32f99826989cde2 WHIRLPOOL a9c90a71c4dc3bed32d8279976b49f21ab777b24f384872e9a82a0f2b2ccbd61544d767fdd8b672f4476a1e071e9b9a02227db7e079099b83eee226251adfd9a
+MISC metadata.xml 450 SHA256 49716db8046aa170a2f72ed14bec1f73335c602bdf2f65c2c88a7c7ed07d7023 SHA512 99adeac1400d381b82d1d3ac3b94b8e00111c7354970937aa5bea8928fdfe15ed85304f073b14018b7396d0213f47c8309b3640570da59d7e5cfd065c395f30f WHIRLPOOL 719ab707add29b757522bfe938724d845bd34c275fa9ea5bb9069845c094bd1df998b02a18f37ae62a2b515728c8be1c426640096304593f0a13e7453ddad1ec
diff --git a/sci-mathematics/snns/files/4.2-ldflags.patch b/sci-mathematics/snns/files/4.2-ldflags.patch
new file mode 100644
index 000000000000..752380d1d8f0
--- /dev/null
+++ b/sci-mathematics/snns/files/4.2-ldflags.patch
@@ -0,0 +1,42 @@
+Respect LDFLAGS
+
+https://bugs.gentoo.org/show_bug.cgi?id=332475
+
+--- tools/sources/Makefile
++++ tools/sources/Makefile
+@@ -147,19 +147,19 @@
+ # Linking of single stand alone programs
+ 
+ analyze: analyze.o
+-	$(CC) analyze.o -lm -o analyze
++	$(CC) $(LDFLAGS) analyze.o -lm -o analyze
+ 
+ pat_sel_simple: pat_sel_simple.o
+-	$(CC) pat_sel_simple.o -lm -o pat_sel_simple
++	$(CC) $(LDFLAGS) pat_sel_simple.o -lm -o pat_sel_simple
+ 
+ mkhead: mkhead.o
+-	$(CC) mkhead.o -lm -o mkhead
++	$(CC) $(LDFLAGS) mkhead.o -lm -o mkhead
+ 
+ mkout: mkout.o
+-	$(CC) mkout.o -lm -o mkout
++	$(CC) $(LDFLAGS) mkout.o -lm -o mkout
+ 
+ mkpat: mkpat.o
+-	$(CC) mkpat.o -lm -o mkpat
++	$(CC) $(LDFLAGS) mkpat.o -lm -o mkpat
+ 
+ 
+ # Make sure that kernel libs are available and up to date
+--- xgui/sources/Makefile
++++ xgui/sources/Makefile
+@@ -202,7 +202,7 @@
+ # Linking of xgui
+ 
+ xgui: $(LIBXGUI1) $(LIBXGUI2) $(BN3DLIB) $(KERNELLIBS)
+-	$(CC) $(LIBXGUI1) $(LIBXGUI2) $(BN3DLIB) \
++	$(CC) $(LDFLAGS) $(LIBXGUI1) $(LIBXGUI2) $(BN3DLIB) \
+ 	$(X_LIBS) -lXaw3d -lXmu -lXt -lXext $(X_PRE_LIBS) -lX11 $(X_EXTRA_LIBS) \
+ 	$(KERNELALLLIBS) -o xgui 
+ 
diff --git a/sci-mathematics/snns/files/4.3-bison-version.patch b/sci-mathematics/snns/files/4.3-bison-version.patch
new file mode 100644
index 000000000000..73da70187254
--- /dev/null
+++ b/sci-mathematics/snns/files/4.3-bison-version.patch
@@ -0,0 +1,11 @@
+--- configure.old	2015-04-08 16:27:05.000000000 -0400
++++ configure	2015-04-08 16:26:41.000000000 -0400
+@@ -5071,7 +5071,7 @@
+ else
+     { echo "$as_me:$LINENO: checking for version of bison" >&5
+ echo $ECHO_N "checking for version of bison... $ECHO_C" >&6; }
+-    bison_version=`$BISON --version`
++    bison_version=`$BISON --version |head -n 1`
+     { echo "$as_me:$LINENO: result: $bison_version" >&5
+ echo "${ECHO_T}$bison_version" >&6; }
+     warn_bison=yes
diff --git a/sci-mathematics/snns/files/4.3-snns-netperf.patch b/sci-mathematics/snns/files/4.3-snns-netperf.patch
new file mode 100644
index 000000000000..f154a538b2d9
--- /dev/null
+++ b/sci-mathematics/snns/files/4.3-snns-netperf.patch
@@ -0,0 +1,164 @@
+--- a/examples/nettalk.README	2008-04-21 03:55:43.000000000 -0400
++++ b/examples/nettalk.README	2015-04-14 09:38:23.836014999 -0400
+@@ -60,7 +60,7 @@
+ Hints:
+ ======
+ 
+-We usually call nettalk.net from the tool 'netperf', a benchmarking
++We usually call nettalk.net from the tool 'snns-netperf', a benchmarking
+ version of SNNS without graphical user interface but with the full and
+ current SNNS kernel. It is supplied with SNNS in the tools directory.
+ We usually train and test nettalk for 10 cycles. Since convergence is
+--- a/man/man1/snns.1	2008-04-21 03:56:05.000000000 -0400
++++ b/man/man1/snns.1	2015-04-14 09:36:27.406012874 -0400
+@@ -111,7 +111,7 @@
+ .BR netlearn (1)
+ backpropagation test program
+ 
+-.BR netperf (1)
++.BR snns-netperf (1)
+ benchmark program
+ 
+ .BR pat_sel (1)
+@@ -132,4 +132,4 @@
+ yet. 
+ 
+ .SH AUTHOR
+-Guenter W. Mamier 
+\ No newline at end of file
++Guenter W. Mamier 
+--- a/tools/doc/netperf.doc	2008-04-21 03:56:06.000000000 -0400
++++ b/tools/doc/netperf.doc	1969-12-31 19:00:00.000000000 -0500
+@@ -1,49 +0,0 @@
+-                  ===============================
+-                  Description of the tool NETPERF
+-                  ===============================
+-
+-This is a benchmark program for SNNS. Propagtion and
+-backpropagation tests are performed.
+-
+-synopsis: netperf
+-
+-
+-example:
+-
+-unix >netperf
+-
+-produces
+-
+-  SNNS 3D-Kernel V3.1000
+-  -----  Benchmark Test  -----
+-
+-  Filename of the network file: ../../../examples/nettalk.net
+-  Loading the network ...
+-
+-  Network name: nettalk1
+-  No. of units       : 349
+-  No. of input units : 203
+-  No. of output units: 26
+-  No. of sites: 0
+-  No. of links: 27480
+-
+-  Learning function: Std_Backpropagation
+-  Update function  : Topological_Order
+-
+-  Do you want to benchmark
+-  Propagation [1] or
+-  Backpropagation [2] ?
+-  Input: 1
+-
+-  Choose no. of cycles: 100
+-
+-  Begin propagation ...
+-
+-
+-  No. of units updated: 34900
+-  No. of sites updated: 0
+-  No. of links updated: 2748000
+-  CPU Time used: 3.05 seconds
+-
+-  No. of connection per second (CPS): 9.0098e+05
+-
+--- a/tools/doc/snns-netperf.doc	1969-12-31 19:00:00.000000000 -0500
++++ b/tools/doc/snns-netperf.doc	2015-04-14 09:37:21.126013855 -0400
+@@ -0,0 +1,49 @@
++                ====================================
++                Description of the tool SNNS-NETPERF
++                ====================================
++
++This is a benchmark program for SNNS. Propagtion and
++backpropagation tests are performed.
++
++synopsis: snns-netperf
++
++
++example:
++
++unix >snns-netperf
++
++produces
++
++  SNNS 3D-Kernel V3.1000
++  -----  Benchmark Test  -----
++
++  Filename of the network file: ../../../examples/nettalk.net
++  Loading the network ...
++
++  Network name: nettalk1
++  No. of units       : 349
++  No. of input units : 203
++  No. of output units: 26
++  No. of sites: 0
++  No. of links: 27480
++
++  Learning function: Std_Backpropagation
++  Update function  : Topological_Order
++
++  Do you want to benchmark
++  Propagation [1] or
++  Backpropagation [2] ?
++  Input: 1
++
++  Choose no. of cycles: 100
++
++  Begin propagation ...
++
++
++  No. of units updated: 34900
++  No. of sites updated: 0
++  No. of links updated: 2748000
++  CPU Time used: 3.05 seconds
++
++  No. of connection per second (CPS): 9.0098e+05
++
+--- a/tools/sources/Makefile	2015-04-14 09:34:31.386010756 -0400
++++ b/tools/sources/Makefile	2015-04-14 09:35:50.526012201 -0400
+@@ -89,7 +89,7 @@
+ 
+ TOOLS_PRG          = $(TOOLS_SOURCES_C:.c=)
+ KRTOOLS_PRG        = snns2c pat_sel netlearn td_bignet ff_bignet \
+-                     netperf snnsbat feedback-gennet convert2snns \
++                     snns-netperf snnsbat feedback-gennet convert2snns \
+                      isnns linknets
+ BATCH_PRG          = batchman
+ 
+@@ -110,7 +110,7 @@
+ tools:       $(TOOLS_PRG) $(KRTOOLS_PRG) $(BATCH_PRG)
+ 
+ $(TOOLSBINDIR):
+-	-mkdir $(TOOLSBINDIR)
++	-mkdir -p $(TOOLSBINDIR)
+ 
+ install: tools $(TOOLSBINDIR)
+ 	for tooltarget in $(TOOLS_PRG) $(KRTOOLS_PRG) $(BATCH_PRG) ; do \
+@@ -191,8 +191,8 @@
+ ff_bignet: ff_bignet.o $(KERNELLIBS)
+ 	$(CC) $(LDFLAGS) ff_bignet.o $(KERNELALLLIBS) -o ff_bignet
+ 
+-netperf: netperf.o $(KERNELLIBS)
+-	$(CC) $(LDFLAGS) netperf.o $(KERNELALLLIBS) -o netperf
++snns-netperf: netperf.o $(KERNELLIBS)
++	$(CC) $(LDFLAGS) netperf.o $(KERNELALLLIBS) -o snns-netperf
+ 
+ snnsbat: snnsbat.o $(KERNELLIBS)
+ 	$(CC) $(LDFLAGS) snnsbat.o $(KERNELALLLIBS) -o snnsbat
diff --git a/sci-mathematics/snns/files/4.3-unstrip.patch b/sci-mathematics/snns/files/4.3-unstrip.patch
new file mode 100644
index 000000000000..4f36040e2218
--- /dev/null
+++ b/sci-mathematics/snns/files/4.3-unstrip.patch
@@ -0,0 +1,11 @@
+--- a/configuration/install-sh	2008-04-21 03:55:33.000000000 -0400
++++ b/configuration/install-sh	2015-04-08 16:59:32.000000000 -0400
+@@ -79,7 +79,7 @@
+ 	    shift
+ 	    continue;;
+ 
+-	-s) stripcmd="$stripprog"
++	-s) stripcmd=""
+ 	    shift
+ 	    continue;;
+ 
diff --git a/sci-mathematics/snns/metadata.xml b/sci-mathematics/snns/metadata.xml
new file mode 100644
index 000000000000..cc5d9687eb2d
--- /dev/null
+++ b/sci-mathematics/snns/metadata.xml
@@ -0,0 +1,15 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
+<pkgmetadata>
+	<maintainer type="person">
+		<email>axs@gentoo.org</email>
+		<name>Ian Stakenvicius</name>
+	</maintainer>
+	<maintainer type="project">
+		<email>sci-mathematics@gentoo.org</email>
+		<name>Gentoo Mathematics Project</name>
+	</maintainer>
+	<upstream>
+		<remote-id type="sourceforge">snns</remote-id>
+	</upstream>
+</pkgmetadata>
diff --git a/sci-mathematics/snns/snns-4.3-r2.ebuild b/sci-mathematics/snns/snns-4.3-r2.ebuild
new file mode 100644
index 000000000000..06d5d7dd7c20
--- /dev/null
+++ b/sci-mathematics/snns/snns-4.3-r2.ebuild
@@ -0,0 +1,123 @@
+# Copyright 1999-2017 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+
+EAPI=5
+PYTHON_COMPAT=( python2_7 )
+DISTUTILS_OPTIONAL=1
+inherit distutils-r1 eutils
+
+MY_P="SNNSv${PV}"
+DESCRIPTION="Stuttgart Neural Network Simulator"
+HOMEPAGE="https://sourceforge.net/projects/snns/"
+SRC_URI="http://www.ra.cs.uni-tuebingen.de/downloads/SNNS/${MY_P}.tar.gz
+	doc? ( http://www.ra.cs.uni-tuebingen.de/downloads/SNNS/SNNSv4.2.Manual.pdf )"
+
+LICENSE="LGPL-2.1"
+KEYWORDS="amd64 ppc x86"
+SLOT="0"
+IUSE="X doc python"
+
+RDEPEND="X? (
+		x11-libs/libX11
+		x11-libs/libXaw3d
+		x11-libs/libXt
+	)"
+DEPEND="${RDEPEND}
+	X? ( x11-proto/xproto )
+	>=sys-devel/bison-1.2.2"
+
+RDEPEND+=" python? ( ${PYTHON_DEPS} )"
+REQUIRED_USE="python? ( ${PYTHON_REQUIRED_USE} )"
+
+S="${WORKDIR}/${MY_P}"
+
+src_prepare() {
+	epatch "${FILESDIR}"/4.3-unstrip.patch
+	epatch "${FILESDIR}"/4.3-bison-version.patch
+	epatch "${FILESDIR}"/4.2-ldflags.patch
+	epatch "${FILESDIR}"/4.3-snns-netperf.patch # bug 248322
+
+	# change all references of Xaw to Xaw3d
+	cd "${S}"/xgui/sources
+	for file in *.c; do
+		sed -e "s:X11/Xaw/:X11/Xaw3d/:g" -i "${file}"
+	done
+
+	# clean up the dirty dist sources and remove files that apparently
+	# are not removed by any clean rules
+	emake clean
+	rm -Rf "${S}"/{tools,xgui}/bin \
+		"${S}"/{Makefile.def,config.h} \
+		"${S}"/configuration/config.{guess,log}
+
+	epatch_user
+
+	if use python; then
+		pushd "${S}"/python > /dev/null || die
+		distutils-r1_src_prepare
+		popd > /dev/null || die
+	fi
+}
+
+src_configure() {
+	econf --enable-global \
+		$(use_with X x)
+
+	if use python; then
+		pushd python > /dev/null || die
+		distutils-r1_src_configure
+		popd > /dev/null || die
+	fi
+}
+
+src_compile() {
+	local compileopts=( compile-kernel compile-tools )
+	use X && compileopts+=( compile-xgui )
+
+	# parallel make sometimes fails (phosphan)
+	# so emake each phase separately (axs)
+	for tgt in "${compileopts[@]}"; do
+		emake ${tgt}
+	done
+
+	if use python; then
+		pushd python > /dev/null || die
+		distutils-r1_src_compile
+		popd > /dev/null || die
+	fi
+}
+
+src_install() {
+	pushd "${S}"/tools/sources > /dev/null || die
+	emake TOOLSBINDIR="${ED}"usr/bin install
+	popd > /dev/null || die
+
+	if use X; then
+		newbin xgui/sources/xgui snns
+
+		echo XGUILOADPATH=/usr/share/doc/${PF} > "${T}"/99snns
+		doenvd "${T}"/99snns
+
+		docompress -x /usr/share/doc/${PF}/{default.cfg,help.hdoc}
+		insinto /usr/share/doc/${PF}
+		doins default.cfg help.hdoc
+	fi
+
+	if use python; then
+		pushd python > /dev/null || die
+		distutils-r1_src_install
+		insinto /usr/share/doc/${PF}/python-examples
+		doins examples/*
+		newdoc README README.python
+		popd > /dev/null || die
+	fi
+
+	if use doc; then
+		insinto /usr/share/doc/${PF}
+		doins "${DISTDIR}"/${MY_P}.Manual.pdf
+	fi
+
+	insinto /usr/share/doc/${PF}/examples
+	doins examples/*
+	doman man/man*/*
+}