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authorV3n3RiX <venerix@redcorelinux.org>2020-01-15 15:51:32 +0000
committerV3n3RiX <venerix@redcorelinux.org>2020-01-15 15:51:32 +0000
commit21435953e16cda318a82334ddbadb3b5c36d9ea7 (patch)
treee1810a4b135afce04b34862ef0fab2bfaeb8aeca /sci-mathematics/pymc
parent7bc9c63c9da678a7e6fceb095d56c634afd22c56 (diff)
gentoo resync : 15.01.2020
Diffstat (limited to 'sci-mathematics/pymc')
-rw-r--r--sci-mathematics/pymc/Manifest4
-rw-r--r--sci-mathematics/pymc/files/pymc-2.3.6-remove-hardcoded-blas.patch11
-rw-r--r--sci-mathematics/pymc/metadata.xml16
-rw-r--r--sci-mathematics/pymc/pymc-2.3.6.ebuild54
4 files changed, 0 insertions, 85 deletions
diff --git a/sci-mathematics/pymc/Manifest b/sci-mathematics/pymc/Manifest
deleted file mode 100644
index f061f545be53..000000000000
--- a/sci-mathematics/pymc/Manifest
+++ /dev/null
@@ -1,4 +0,0 @@
-AUX pymc-2.3.6-remove-hardcoded-blas.patch 414 BLAKE2B 6bf59a1088f701c0897c002aabe0c9de0a87067da24ffb965afcb304950662f551fc63d4694cda2d6832d5faf963c3801e3fe2365c46ab5b791df1c28de0ad3f SHA512 776ecd9876342215c925ad4a2dfa123e9f6656c6e5a8f3b8d208cc89befc84164b5355d4c1afce8be8962951c3343629cfacb0449d6d0b05d9333886803bbb4a
-DIST pymc-2.3.6.zip 402827 BLAKE2B e8ed875d84e8783f35f9186c6d7d659f29a49937896261a0f8bd892f324d2e17887ce37381aece8d97e47389edf7d727dc73a40ef6abfe4682a7bcbd1a768336 SHA512 4b5e0663ca296efd8d242a0b6362a12d475cdabf661a430de5455e60999acf8a4a30d053303c2f79e8aec3e5e7d120f56cb341e283aa87f31c224e4e57300d13
-EBUILD pymc-2.3.6.ebuild 1323 BLAKE2B f39df705cf5011997e341041e8e30a1509f5aee25307b7626dcbde50e6461fdbdb813ce1a235ac74085a2ee5a3ca43fbe9f03ccd30169af15b9a2c43853dd13e SHA512 1b60973ba58034119c660e39dcaa9852ea7a417c8f07d292ed2d0cf75976d1057b08f19a18a78b1240cb35a58e646ef1acd887b9c6091b99898f79e8e3cd5159
-MISC metadata.xml 554 BLAKE2B 229a895f97fe3880b2b739dcbe09bb377bb9625eaa0ef6388097143d90b8aaae7c08100ff5e9503f5c2c1ea62e574f712de2826770177a52ea27d925edc38069 SHA512 0d9ac09e21100370ed731a23cbce01c73a734a4e2adb282a2c0cc185c75d011f3aeafc75283d27e30635f00cf7fb27a6a502e1a9cb922892d10016d6e9770d65
diff --git a/sci-mathematics/pymc/files/pymc-2.3.6-remove-hardcoded-blas.patch b/sci-mathematics/pymc/files/pymc-2.3.6-remove-hardcoded-blas.patch
deleted file mode 100644
index 93ce86f5c717..000000000000
--- a/sci-mathematics/pymc/files/pymc-2.3.6-remove-hardcoded-blas.patch
+++ /dev/null
@@ -1,11 +0,0 @@
---- a/setup.py
-+++ b/setup.py
-@@ -80,7 +80,7 @@
-
- # Compile covariance functions
- config.add_extension(name='gp.cov_funs.isotropic_cov_funs',\
--sources=['pymc/gp/cov_funs/isotropic_cov_funs.f','blas/BLAS/dscal.f'],\
-+sources=['pymc/gp/cov_funs/isotropic_cov_funs.f'],\
- extra_info=lapack_info)
-
- config.add_extension(name='gp.cov_funs.distances',sources=['pymc/gp/cov_funs/distances.f'], extra_info=lapack_info)
diff --git a/sci-mathematics/pymc/metadata.xml b/sci-mathematics/pymc/metadata.xml
deleted file mode 100644
index 0b8c7cb3f0e5..000000000000
--- a/sci-mathematics/pymc/metadata.xml
+++ /dev/null
@@ -1,16 +0,0 @@
-<?xml version='1.0' encoding='UTF-8'?>
-<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
-<pkgmetadata>
- <maintainer type="person">
- <email>heroxbd@gentoo.org</email>
- <name>Benda Xu</name>
- </maintainer>
- <longdescription lang="en">
-PyMC is a python module that implements Bayesian statistical models
-and fitting algorithms, including Markov chain Monte Carlo.
- </longdescription>
- <upstream>
- <remote-id type="github">pymc-devs/pymc</remote-id>
- <remote-id type="pypi">pymc</remote-id>
- </upstream>
-</pkgmetadata>
diff --git a/sci-mathematics/pymc/pymc-2.3.6.ebuild b/sci-mathematics/pymc/pymc-2.3.6.ebuild
deleted file mode 100644
index 17a639ab072b..000000000000
--- a/sci-mathematics/pymc/pymc-2.3.6.ebuild
+++ /dev/null
@@ -1,54 +0,0 @@
-# Copyright 1999-2019 Gentoo Authors
-# Distributed under the terms of the GNU General Public License v2
-
-EAPI=6
-
-PYTHON_COMPAT=( python{2_7,3_5,3_6} )
-
-inherit distutils-r1 flag-o-matic fortran-2 toolchain-funcs
-
-DESCRIPTION="Markov Chain Monte Carlo sampling toolkit"
-HOMEPAGE="https://github.com/${PN}-devs/${PN} https://pypi.org/project/${PN}"
-SRC_URI="mirror://pypi/${PN:0:1}/${PN}/${P}.zip"
-
-SLOT=0
-KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux"
-LICENSE=AFL-3.0
-IUSE="test"
-RESTRICT="!test? ( test )"
-
-RDEPEND=">=dev-python/numpy-1.6[${PYTHON_USEDEP},lapack]
- >=dev-python/matplotlib-1.0[${PYTHON_USEDEP}]"
-DEPEND="
- test? (
- ${RDEPEND}
- dev-python/nose[${PYTHON_USEDEP}]
- )"
-
-PATCHES=( "${FILESDIR}/${PN}-2.3.6-remove-hardcoded-blas.patch" )
-
-# tests freeze at some point
-#RESTRICT="test"
-
-python_prepare_all() {
- # forcibly remove bundled libs, just to be sure...
- rm -r blas || die
-
- distutils-r1_python_prepare_all
-}
-
-python_configure_all() {
- append-fflags -fPIC
- append-ldflags -shared
-
- [[ $(tc-getFC) == *gfortran* ]] && mydistutilsargs=( config_fc --fcompiler=gnu95 )
-}
-
-python_test() {
- distutils_install_for_testing
- cd "${TEST_DIR}" || die
- # Use agg backend instead of gtk
- echo 'backend : agg' > matplotlibrc || die
-
- ${EPYTHON} -c "import pymc; pymc.test()" || die "Tests failed on ${EPYTHON}"
-}