gentoo resync : 21.06.2020

14 files changed, 272 insertions, 24 deletions

diff --git a/sci-libs/Manifest.gz b/sci-libs/Manifest.gz
index 20af60d3fbc6..7f85d66655f6 100644
--- a/sci-libs/Manifest.gz
+++ b/sci-libs/Manifest.gz
diff --git a/sci-libs/arpack/Manifest b/sci-libs/arpack/Manifest
index 1f2d52aed235..1ae24ed7116d 100644
--- a/sci-libs/arpack/Manifest
+++ b/sci-libs/arpack/Manifest
@@ -4,7 +4,7 @@ DIST arpack-ng_3.1.5.tar.gz 1516406 BLAKE2B 14dea27dbe7d17144871c62db58467642f46
 DIST tutorial.ps.gz 105599 BLAKE2B 99570e6a0cc1c020b9c271e8ce1cc224f69ff5333cc818c10b063dc8ffbaf66a9f5c6ede99541b4212286d422146b1c4e332eba7e1635c99efa0e4c2620f0630 SHA512 a7b8fefd1a572ed477ae208d49094c1c65c9368990d12de9b3528e33fed546c947659f74e54a810d04154b4a1b0f9a94bcba4db0cf59d379e20786a261066aa4
 DIST ug.ps.gz 248543 BLAKE2B ac010aef470060636fa00360636ba093f0d24d219fa927c79fb1726b798160eda74fa8b4be6c7dff94f5759efcf30afa99ad310e7959115e028738beb8aa125d SHA512 3349117fb10b07207ffbab2ffa31b406d026855ea4c16e8649b14c7d70bc94e11b5730672e34acd654817799136d4bd76569ac50ec78d787df5582d18ed61328
 EBUILD arpack-3.1.5.ebuild 1550 BLAKE2B 0b18c51eff62ef6f0d25cd4692dfe0c6fe4b7148276427c69aa07eb487596ae624384140cb7d7cfe8939d8edd21ec4c361904220a309a5ca061e92e41faf0f35 SHA512 201b1020fda26b59b2b8c9b989500039a7d73718d4fd9531234f1a20e1972d33ba1ac827139ef0e453452cc6d358c7eabd568b2fab10ca2597d3bc2a473c292b
-EBUILD arpack-3.4.0.ebuild 1409 BLAKE2B 42a9a3d01a7fc373ee4c3edc4ab8edb205f9eb8c816fea15e0aff395d92bac6fbead0d1a9be0ac59259c9c3c338821f9934f8e65aeaf02e09055a46609a48ec0 SHA512 07ee37e88468f532e57845940215c095cbdf44ce29fb653be6b501358b10b3740ccf6d623d39b94ab24daf65789959863826e16361425506e0c7fbe93e246b21
-EBUILD arpack-3.5.0.ebuild 1416 BLAKE2B f39c101a99897fef9b47f810a6b96dea1501ab513d6a5c6ce363299d4b2a2543e472ca3a6fc7e900e73b549e194e43ad3501027961434ae9351964ac99b55582 SHA512 ecf01e335a5319330c2bf5f2021797cd80ee84afa867917da5ae6040dc3271eebf28cc7c256bb3e82e993d5508cc64eb97c77e23fd9c20d4f344dd74cc32e9a0
-EBUILD arpack-9999.ebuild 1310 BLAKE2B 2220a5ae7998bde895b498b9ae9df4546f29e2ef0e2264c33ac0de7f63661af860c7d52656e3f04d6d69759d34de280bf7236a8e96e078b8f5ade48a70ce0356 SHA512 cb88ce20b40c71a78a163187d91760faf999bd7efe537de36cd59e797c5e3f1b647f740e9acad2fb80e307ab6f89bfd628ccf13f04647ac671d3a7823a7c6407
+EBUILD arpack-3.4.0.ebuild 1404 BLAKE2B bf8e09e30ec596ab74d018e18070024bc08f9330111b79df485319cfa4fb11c233e5e6fcf028494954944da04d29106f30705bb61319381adfbc023a94d9b375 SHA512 7bd4c57f74ac17f1f50943e521c67aef50c65d16fb6b065a4a955e4cfab53fb7bb0a58e4925e9dc2e2eb8747ee9ffd4b5217f3e84c6b3ed5d23f2c0ae30c06ac
+EBUILD arpack-3.5.0.ebuild 1411 BLAKE2B 646f23f6893c1bda8d0c3942603a07ed7b033d5995abba9e9d61fe1bd0b52e3d86d0b5726cadec888797ee10cf8af161c92d0b7814ef7db64bd4a253e99ae1e7 SHA512 67d8cd863f235f6472273a8d4ee882685112791d33ef63bcecf732b0e0de44c10ff010e8ae691e3eaecb86d5e8a22fdf8de5da0c6c48badf7f540c81ed21af80
+EBUILD arpack-9999.ebuild 1247 BLAKE2B bbbec3f3b0fce5ffc831382cd9257e7db4a2c118cc64ec7954d457dbab5943f546258a61a22f2d2bb3a6617df0b61e26869698c1aba2c0bbb1b871d85b78cedd SHA512 00dba333d657689664eff0120eeaef5f9753d9169ee644004aea7099279c1d443be9c170a9d2ef570d8d2f2be7b795914767547150d95ca1cec17f05eef51fe1
 MISC metadata.xml 974 BLAKE2B c9121a0b23acddc3268d4bdbf4537104217a00d09263d29b6cc6f832c87f9a9775f6fab567976078dc1dfa54f2bac627d792b1819a9ea698f3a1534bc52c39da SHA512 c3e094cab53fb61c9acf3eff6ca0c0fc53a71ec135315ba833fbfe6a5ae9481f2b4de5270ccd19ec84cf85dfb18df179e1e234d268eef1af98be218575dcd4bf
diff --git a/sci-libs/arpack/arpack-3.4.0.ebuild b/sci-libs/arpack/arpack-3.4.0.ebuild
index 0b424e228681..dfec8e3b0d4c 100644
--- a/sci-libs/arpack/arpack-3.4.0.ebuild
+++ b/sci-libs/arpack/arpack-3.4.0.ebuild
@@ -3,7 +3,7 @@
 
 EAPI=7
 
-inherit autotools eutils flag-o-matic fortran-2 toolchain-funcs
+inherit autotools flag-o-matic fortran-2 toolchain-funcs
 
 DESCRIPTION="Arnoldi package library to solve large scale eigenvalue problems"
 HOMEPAGE="http://www.caam.rice.edu/software/ARPACK/ https://github.com/opencollab/arpack-ng"
@@ -22,8 +22,8 @@ RDEPEND="
 	virtual/blas
 	virtual/lapack
 	mpi? ( virtual/mpi[fortran] )"
-DEPEND="${RDEPEND}
-	virtual/pkgconfig"
+DEPEND="${RDEPEND}"
+BDEPEND="virtual/pkgconfig"
 
 S="${WORKDIR}/${PN}-ng-${PV}"
 
@@ -33,7 +33,9 @@ src_prepare() {
 }
 
 src_configure() {
-	append-fflags -fallow-argument-mismatch
+	test-flag-FC -fallow-argument-mismatch &&
+		append-fflags -fallow-argument-mismatch
+
 	econf \
 		--disable-static \
 		--with-blas="$($(tc-getPKG_CONFIG) --libs blas)" \
@@ -48,10 +50,9 @@ src_install() {
 	newdoc DOCUMENTS/README README.doc
 	use doc && dodoc "${WORKDIR}"/*.ps
 	if use examples; then
-		docinto /usr/share/doc/${PF}
 		dodoc -r EXAMPLES
 		if use mpi; then
-			docinto /usr/share/doc/${PF}/EXAMPLES/PARPACK
+			docinto EXAMPLES/PARPACK
 			dodoc -r PARPACK/EXAMPLES/MPI
 		fi
 	fi
diff --git a/sci-libs/arpack/arpack-3.5.0.ebuild b/sci-libs/arpack/arpack-3.5.0.ebuild
index 097be6e89f8f..aced391f4b38 100644
--- a/sci-libs/arpack/arpack-3.5.0.ebuild
+++ b/sci-libs/arpack/arpack-3.5.0.ebuild
@@ -3,7 +3,7 @@
 
 EAPI=7
 
-inherit autotools eutils flag-o-matic fortran-2 toolchain-funcs
+inherit autotools flag-o-matic fortran-2 toolchain-funcs
 
 DESCRIPTION="Arnoldi package library to solve large scale eigenvalue problems"
 HOMEPAGE="http://www.caam.rice.edu/software/ARPACK/ https://github.com/opencollab/arpack-ng"
@@ -22,8 +22,8 @@ RDEPEND="
 	virtual/blas
 	virtual/lapack
 	mpi? ( virtual/mpi[fortran] )"
-DEPEND="${RDEPEND}
-	virtual/pkgconfig"
+DEPEND="${RDEPEND}"
+BDEPEND="virtual/pkgconfig"
 
 S="${WORKDIR}/${PN}-ng-${PV}"
 
@@ -33,7 +33,9 @@ src_prepare() {
 }
 
 src_configure() {
-	append-fflags -fallow-argument-mismatch
+	test-flag-FC -fallow-argument-mismatch &&
+		append-fflags -fallow-argument-mismatch
+
 	econf \
 		--disable-static \
 		--with-blas="$($(tc-getPKG_CONFIG) --libs blas)" \
@@ -48,10 +50,9 @@ src_install() {
 	newdoc DOCUMENTS/README README.doc
 	use doc && dodoc "${WORKDIR}"/*.ps
 	if use examples; then
-		docinto /usr/share/doc/${PF}
 		dodoc -r EXAMPLES
 		if use mpi; then
-			docinto /usr/share/doc/${PF}/EXAMPLES/PARPACK
+			docinto EXAMPLES/PARPACK
 			dodoc -r PARPACK/EXAMPLES/MPI
 		fi
 	fi
diff --git a/sci-libs/arpack/arpack-9999.ebuild b/sci-libs/arpack/arpack-9999.ebuild
index e295ad66c2cd..eac5961625d4 100644
--- a/sci-libs/arpack/arpack-9999.ebuild
+++ b/sci-libs/arpack/arpack-9999.ebuild
@@ -3,12 +3,11 @@
 
 EAPI=7
 
-inherit autotools eutils fortran-2 toolchain-funcs
+inherit autotools fortran-2 toolchain-funcs
 
-if [[ ${PV} = *9999* ]]; then
+if [[ ${PV} == *9999 ]]; then
 	inherit git-r3
 	EGIT_REPO_URI="https://github.com/opencollab/arpack-ng"
-	KEYWORDS=""
 else
 	SRC_URI="https://github.com/opencollab/${PN}-ng/archive/${PV}.tar.gz -> ${P}.tar.gz"
 	KEYWORDS="~amd64 ~arm ~hppa ~ppc ~ppc64 ~x86 ~amd64-linux ~x86-linux ~ppc-macos"
@@ -25,8 +24,8 @@ RDEPEND="
 	virtual/blas
 	virtual/lapack
 	mpi? ( virtual/mpi[fortran] )"
-DEPEND="${RDEPEND}
-	virtual/pkgconfig"
+DEPEND="${RDEPEND}"
+BDEPEND="virtual/pkgconfig"
 
 src_prepare() {
 	default
@@ -47,10 +46,9 @@ src_install() {
 	dodoc DOCUMENTS/*.doc
 	newdoc DOCUMENTS/README README.doc
 	if use examples; then
-		docinto /usr/share/doc/${PF}
 		dodoc -r EXAMPLES
 		if use mpi; then
-			docinto /usr/share/doc/${PF}/EXAMPLES/PARPACK
+			docinto EXAMPLES/PARPACK
 			dodoc -r PARPACK/EXAMPLES/MPI
 		fi
 	fi
diff --git a/sci-libs/bmrblib/Manifest b/sci-libs/bmrblib/Manifest
index f89f228c9765..29ec3a67279c 100644
--- a/sci-libs/bmrblib/Manifest
+++ b/sci-libs/bmrblib/Manifest
@@ -1,3 +1,5 @@
 DIST bmrblib-1.0.3.tar.bz2 51246 BLAKE2B e2adc970523b33c88b73451b1c3d50c218e4600e0e1019bb6fa4dbae1c6a6737bcd1661bf68b6863a1199c46f3df1b0ba36c155efe1010152e120ccc23b034ab SHA512 b03ad9e4ca035439165ebd1b7ba93ede427b2a233a4179be4e8089db988f1dcdce68b1e97348fe22fe7f2c3827ed003b654e0674a4d16a9e32a8a7c255c4b248
+DIST bmrblib-1.0.4.tar.bz2 51211 BLAKE2B 4d901c085648971af0e271d5524d4fe0f0e085f9ab34cde4cbc2d7b17d1dd37ffd4051c219e769738a9eac8b11b6950c5575d1bd9b9193ef48a698560de3fd96 SHA512 579f3beaf343416c58b344a33ee94d42bcedba558b33c2b9f98662d2ffc685887617229b5f7e75acf61712fe4f03827ca4413bc08e3bd2e72f69d952310891e0
 EBUILD bmrblib-1.0.3.ebuild 423 BLAKE2B 2641bd9dfbc31b3f8ba1fc79b207126772067ba042597a906021f11db824e89642b8118e2f9ab414fd017288413e2603e5fcfba420a13732bda7d7eda45ea474 SHA512 81ce3293ee290b4c0aebbba08d3f203d5501129a13fe6b4c3733c08ba45f595ab9b8e571bcbd880599783a9e46f1170a236a23082f3cb0e07d0b8f3d5c80b74d
+EBUILD bmrblib-1.0.4.ebuild 433 BLAKE2B 95bc15a3674992928c20b4e313f031ddc427d87d08bc2438628e618d5a874eb56202c2848dafbd525c7f8e55a28d5faf1852b411a4c776482ca94050d8107b25 SHA512 45079cddd49a13a65f68cbdf9db07f6d5b2591606f85154fafdf9a5a27e0de6531c407968b95ecf4daed02410d8e1a8b81c9b831d6a4d55711dfb8dd14c112b9
 MISC metadata.xml 697 BLAKE2B 6448efc90859f836649dc91366bc8662fbccac80ee2079880078238b2c9bd7897cb3337aecc727f2dc2da2f8916e766c25bcd5703d1b0eb4b263c3e3481fffb7 SHA512 c09f4efba0b36032d60b363ff7f18a6b477f6a321c7d8069ebcc4bcd0deee1448c1230e5651371a5748cdd66c9032e8ff7c480dfa3af7a712503f3589d282f28
diff --git a/sci-libs/bmrblib/bmrblib-1.0.4.ebuild b/sci-libs/bmrblib/bmrblib-1.0.4.ebuild
new file mode 100644
index 000000000000..c21725212608
--- /dev/null
+++ b/sci-libs/bmrblib/bmrblib-1.0.4.ebuild
@@ -0,0 +1,17 @@
+# Copyright 1999-2020 Gentoo Authors
+# Distributed under the terms of the GNU General Public License v2
+
+EAPI=7
+
+PYTHON_COMPAT=( python2_7 python3_{6..9} )
+
+inherit distutils-r1
+
+DESCRIPTION="API abstracting the BioMagResBank (BMRB) NMR-STAR format"
+HOMEPAGE="https://sourceforge.net/projects/bmrblib"
+SRC_URI="mirror://sourceforge/${PN}/${P}.tar.bz2"
+
+SLOT="0"
+LICENSE="GPL-3"
+KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux"
+IUSE=""
diff --git a/sci-libs/libsvm/Manifest b/sci-libs/libsvm/Manifest
index 5c47872d975a..7871337e5d8b 100644
--- a/sci-libs/libsvm/Manifest
+++ b/sci-libs/libsvm/Manifest
@@ -1,5 +1,7 @@
 AUX 3.11-openmp.patch 943 BLAKE2B 39f092a108f808711dd928595cd82d507f6154efd549c319047c7a94edb772887338209549dba99cca4ed0a8106dc40ef4afd3a42dfe41d7d884f7f630391bfe SHA512 17bcea4da6a6aa32192ce7fb66e7eefef5e037ca2afd968e67de385938555975abe2103ee2cc50d02cd21d9783e9334eac93de694d6e685f13af80c49e42af38
 AUX 3.14-makefile.patch 1634 BLAKE2B f25e5225e07040e43cc6057558914f177de4e3d40254df9668de8719fbacd6cbadd685d38e2935c13e1778d8a260ef0733672bfc5c719a9e5d9a8832cbbe8ca8 SHA512 f4c2e2f6556604bf3572e341176c855e87caf4c3db8c2b347ce4e7a7948d21b708a7df29d5bf9b741dd3f34e08a0750572b94bd5e94bb4052f1ba4b9ae50e918
 DIST libsvm-3.22.tar.gz 850563 BLAKE2B 824451dd2cafb7f2546d510d2c516dee67c27e586d5b16557a3c23e0c372cd577af5a322e24f70df6cda66e0a58f2e4d70017e6155a1d211ad3c728f840bfa2b SHA512 80a22fd2c2a82f70b8279fa5d8c5a2838b10ee439cf6d725816d608f8e45990ba1780ae6750cad78b25c1c18daf2c2315b342b9e329affbd5729d6fd7da87f7a
+DIST libsvm-3.24.tar.gz 876441 BLAKE2B 6781804ba9706de5ad363bcbda20f2ec181cc4ee9613c9e7429f03872f7a03b04859df2ec00692d9de3ea237d1e478435a4d4db3ce7e5292689a2eab26a1fe46 SHA512 ff3c39bc84291bfb707151d7b8b6fb2eece937afa769cb8ee579d00ee4c30e943d476cd7bb18851d482c9bed89cf94fb3fd8abca4d47253360e12e9406f2f24b
 EBUILD libsvm-3.22.ebuild 2668 BLAKE2B c1172520f22ec7f86e77aa6fcb564067c1ad055a5ce9b39a003342ee2e15378d09c19a56dcf2f76571bda62679038eb6d08c6d47533b0e2a88f37738e9e359fa SHA512 fd1d93c0b88763c0ce8e9e798bf46345debf7d00e76fb0f815e2cfbd8ce57f2b3d37a79b236699045421fefd98bdb7cd8ac66069d0ae493315af6c3cb6294637
+EBUILD libsvm-3.24.ebuild 2678 BLAKE2B acd76a68d807cfd2cd4f1bee6b6731ee5713d3e50b35fda2d8dbd304c14858f5f9c7ff0ab6ae0d4b5a2f9af37361f3caa76012d8f8533c049f550036b96bc0c2 SHA512 964b86e17b70ab4de7d81083169132b56721441babe02ee44fc8199aaeb04be8ca9a244015934c39e072e1283b93b0c35e3835337614a201e1ce9ef3f80dc09e
 MISC metadata.xml 815 BLAKE2B b73e733b7881fd6c9b45f7605259a7d99e9bef6729936b7502df8c857e40e8552ebc0be25065a7d1391dd9b98cb4dd81b5dfd12722e5852f18c85ee693b2d20f SHA512 0e26fd0b3ddb08f769e92249819e93483cbca426465b8cd623703be2c242b5c8dd9731c978f6965e2c39d680229d5b15587ec0a16aea0b6fcf8172cf70e7f7ec
diff --git a/sci-libs/libsvm/libsvm-3.24.ebuild b/sci-libs/libsvm/libsvm-3.24.ebuild
new file mode 100644
index 000000000000..e68a5236b219
--- /dev/null
+++ b/sci-libs/libsvm/libsvm-3.24.ebuild
@@ -0,0 +1,118 @@
+# Copyright 1999-2020 Gentoo Authors
+# Distributed under the terms of the GNU General Public License v2
+
+EAPI=7
+PYTHON_COMPAT=( python3_{6..9} )
+
+inherit flag-o-matic java-pkg-opt-2 python-r1 toolchain-funcs
+
+DESCRIPTION="Library for Support Vector Machines"
+HOMEPAGE="https://www.csie.ntu.edu.tw/~cjlin/libsvm/"
+SRC_URI="https://www.csie.ntu.edu.tw/~cjlin/libsvm/${P}.tar.gz"
+
+LICENSE="BSD"
+SLOT="0/2"
+KEYWORDS="~amd64 ~ppc ~ppc64 ~x86 ~amd64-linux ~x86-linux"
+IUSE="java openmp python tools"
+REQUIRED_USE="python? ( ${PYTHON_REQUIRED_USE} )"
+
+DEPEND="
+	java? ( >=virtual/jdk-1.4 )
+	python? ( ${PYTHON_DEPS} )
+"
+RDEPEND="
+	java? ( >=virtual/jre-1.4 )
+	python? ( ${PYTHON_DEPS} )
+	tools? ( sci-visualization/gnuplot )
+"
+
+PATCHES=(
+	"${FILESDIR}/3.11-openmp.patch"
+	"${FILESDIR}/3.14-makefile.patch"
+)
+
+pkg_setup() {
+	if use openmp; then
+		if ! tc-has-openmp; then
+			ewarn "OpenMP is not supported by your currently selected compiler"
+
+			if tc-is-clang; then
+				ewarn "OpenMP support in sys-devel/clang is provided by sys-libs/libomp,"
+				ewarn "which you will need to build ${CATEGORY}/${PN} for USE=\"openmp\""
+			fi
+
+			die "need openmp capable compiler"
+		fi
+
+		append-cflags -fopenmp
+		append-cxxflags -fopenmp
+		append-cppflags -DOPENMP
+	fi
+}
+
+src_prepare() {
+	default
+
+	sed -i -e "s@\.\./@${EPREFIX}/usr/bin/@g" tools/*.py \
+		|| die "Failed to fix paths in python files"
+	sed -i -e "s|./grid.py|${EPREFIX}/usr/bin/svm-grid|g" tools/*.py \
+		|| die "Failed to fix paths for svm-grid"
+	sed -i -e 's/grid.py/svm-grid/g' tools/grid.py \
+		|| die "Failed to rename grid.py to svm-grid"
+
+	if use java; then
+		local JAVAC_FLAGS="$(java-pkg_javac-args)"
+		sed -i \
+			-e "s/JAVAC_FLAGS =/JAVAC_FLAGS=${JAVAC_FLAGS}/g" \
+			java/Makefile || die "Failed to fix java makefile"
+	fi
+	tc-export CXX CC
+}
+
+src_compile() {
+	default
+	use java && emake -C java
+}
+
+src_install() {
+	dobin svm-train svm-predict svm-scale
+	dolib.so *.so*
+	doheader svm.h
+
+	DOCS=( README )
+
+	if use tools; then
+		local t
+		for t in tools/*.py; do
+			python_foreach_impl python_newscript ${t} svm-$(basename ${t} .py)
+		done
+
+		mv tools/README{,.tools} || die
+		DOCS+=( tools/README.tools )
+
+		insinto /usr/share/doc/${PF}/examples
+		docompress -x /usr/share/doc/${PF}/examples
+		doins heart_scale
+		doins -r svm-toy
+	fi
+
+	if use python ; then
+		installation() {
+			touch python/__init__.py || die
+			python_moduleinto libsvm
+			python_domodule python/*.py
+		}
+		python_foreach_impl installation
+
+		mv python/README{,.python} || die
+		DOCS+=( python/README.python )
+	fi
+
+	HTML_DOCS=( FAQ.html )
+	if use java; then
+		java-pkg_dojar java/libsvm.jar
+		HTML_DOCS+=( java/test_applet.html )
+	fi
+
+	einstalldocs
+}
diff --git a/sci-libs/nlopt/Manifest b/sci-libs/nlopt/Manifest
index c503ace00d75..6f40d8de381d 100644
--- a/sci-libs/nlopt/Manifest
+++ b/sci-libs/nlopt/Manifest
@@ -3,5 +3,7 @@ AUX nlopt-2.3-pkgconfig.patch 318 BLAKE2B 3569931fb9e2fceebf46c542e10fcd2562c8ac
 AUX nlopt-2.4.2-fix-dynamic-underlinking.patch 2522 BLAKE2B 5cdb8ea93cb44c25b1814431962259727c5c4dc97b4cf78d239189187f953a4b9458849a9afe77979841768b78226c6218ecc531328cb5752d26b9df63468ee5 SHA512 bdb07b216ffb68b68cb3f03076336234c558db3953c48b02511883bf9fb12f5915c04950a2e3222577c7af4fb1e288a165af2e8adf211fc853e747c98a65cd19
 AUX nlopt-2.4.2-octave-4-map.patch 1858 BLAKE2B 34b1696762a9690a5ef5f3abc265b37d5de2f92b29e514952aa062faf1553a77ed3dba6f2abf7c8f1f7cbcc1cc63c9546967f3a317a773aa5e7c5c1e9c13f7e3 SHA512 00c45fe04fdc1acf4ccbb77aaf39feab0cb2b811b45edf791db7e87aa9e965c23b6131400eebd68335be8dcb86f346c01892e718f739f07dc0853b3dd9ea5ad4
 DIST nlopt-2.4.2.tar.gz 2361992 BLAKE2B c1c9f533c7e7b3bb61e81343ebd26b87e05434fdbea1f347fc5f6a6c10160289ce105a51c6540296f3f1d122d31b415452da49b84516cd13fabc73372e4cfd0e SHA512 136aacc00a69f77e8a7ce5dc26a5f3f027bc8c01b97aa1f43919462e0a412154eabfb01be258e082dffe61f9b554bb2bfbb550a7b82c7c77c7b22874a64a9703
+DIST v2.6.2.tar.gz 2040229 BLAKE2B f1f4124de574600ddbef8a885bbdd3a4f57b469b2f958ce94bbc831cf9bfa8a845e438fccfe4ab219a73a5675b8d880f6d49e0e7cbe9d0966777b0d2344521d4 SHA512 61e5c01140a57c0ad2a0acd82ad50dce1b5679dc281e55cbbc332e876b19a689013100617545a42b721d8c487df37d6ccd67859171243433fe29468f259b556b
 EBUILD nlopt-2.4.2-r2.ebuild 2714 BLAKE2B 3939763ab3da6e8708c10b3ca39f1c001f2d9913e883648cade9d58b83c3242804991373fdd36599474715840562533881c8ab0ffd98cda54ad71d3d4c12cbe4 SHA512 c2a7e3336ccb1887c2c6074aed5fffb254dd11e607d871bd3ed864794d04cdfb7a3aff711b8cb5f7f0a98629f34a196f4f5fa7221f5c07324b2439b48cc9e5c9
+EBUILD nlopt-2.6.2.ebuild 1962 BLAKE2B dafee2481e89c71e5c55cb0480358754ee82fd9486f85a751485cfdfdeb0743119d6e7ac3cdfe10f85076eed564507296a6e9f94d640ecbd84800a53cc0ed55b SHA512 fb35120424450c937211755fc1350d24510b09c49fe6b58c6d611f3ca98ef861e0aa89bd3ac27d9aedd747e5c0a18a22df1fb1be2b99b7dfe3eed44ebba5b5e8
 MISC metadata.xml 1095 BLAKE2B e5032d65fbb49b125b6cb5abe332c52a1e058271c71aec2d2522cc78874a079f8987e2e8356290295bcb886c32e1cf794df9b157ebc712a862605105b80abe31 SHA512 74a37bc3e6fa74d0f96c3390fadf16e76caf904f43cf9ac0496f70e3e3bc458727e58d9fc65c39a81302b081575e530c27be3812488df20fab42aff5494437f7
diff --git a/sci-libs/nlopt/nlopt-2.6.2.ebuild b/sci-libs/nlopt/nlopt-2.6.2.ebuild
new file mode 100644
index 000000000000..f21aa295b041
--- /dev/null
+++ b/sci-libs/nlopt/nlopt-2.6.2.ebuild
@@ -0,0 +1,95 @@
+# Copyright 1999-2020 Gentoo Authors
+# Distributed under the terms of the GNU General Public License v2
+
+EAPI=7
+
+PYTHON_COMPAT=( python2_7 python3_{6..9} )
+
+inherit python-r1 cmake
+
+DESCRIPTION="Non-linear optimization library"
+HOMEPAGE="https://ab-initio.mit.edu/nlopt/"
+SRC_URI="https://github.com/stevengj/nlopt/archive/v${PV}.tar.gz"
+
+LICENSE="LGPL-2.1 MIT"
+KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux"
+SLOT="0"
+IUSE="cxx guile octave python static-libs test"
+REQUIRED_USE="python? ( ${PYTHON_REQUIRED_USE} )"
+RESTRICT="!test? ( test )"
+
+RDEPEND="
+	guile? ( dev-scheme/guile:* )
+	octave? ( sci-mathematics/octave )
+	python? (
+		${PYTHON_DEPS}
+		$(python_gen_cond_dep 'dev-python/numpy-python2[${PYTHON_USEDEP}]' -2)
+		$(python_gen_cond_dep 'dev-python/numpy[${PYTHON_USEDEP}]' -3)
+	)
+	"
+DEPEND="
+	${RDEPEND}
+	python? ( dev-lang/swig )
+	"
+
+src_prepare() {
+	cmake_src_prepare
+	use python && python_copy_sources
+}
+
+src_configure() {
+	local mycmakeargs=(
+		-DNLOPT_CXX=$(usex cxx)
+		-DNLOPT_FORTRAN=$(usex test)
+		-DNLOPT_GUILE=$(usex guile)
+		-DNLOPT_OCTAVE=$(usex octave)
+		-DNLOPT_PYTHON=$(usex python)
+		-DNLOPT_SWIG=$(usex python)
+		-DNLOPT_TESTS=$(usex test)
+	)
+	if use python; then
+		python_foreach_impl run_in_build_dir cmake_src_configure
+	else
+		cmake_src_configure
+	fi
+}
+
+src_compile() {
+	if use python; then
+		python_foreach_impl run_in_build_dir cmake_src_compile
+	else
+		cmake_src_compile
+	fi
+}
+
+src_test() {
+	do_test() {
+		local a f
+		cd "${BUILD_DIR}"/test
+		for a in {1..$(usex cxx 9 7)}; do
+			for f in {5..9}; do
+				./testopt -a $a -o $f || die "algorithm $a function $f failed"
+			done
+		done
+	}
+	if use python; then
+		python_foreach_impl run_in_build_dir do_test
+	else
+		do_test
+	fi
+}
+
+nlopt_install() {
+	cmake_src_install
+	python_optimize
+}
+
+src_install() {
+	if use python; then
+		python_foreach_impl run_in_build_dir nlopt_install
+	else
+		cmake_src_install
+	fi
+	local r
+	for r in */README; do newdoc ${r} README.$(dirname ${r}); done
+}
diff --git a/sci-libs/scipy/Manifest b/sci-libs/scipy/Manifest
index 150d44f869cb..8ff79d235f37 100644
--- a/sci-libs/scipy/Manifest
+++ b/sci-libs/scipy/Manifest
@@ -4,6 +4,6 @@ DIST scipy-1.1.0.tar.gz 15583560 BLAKE2B 477753e622ee26a3bc8c2cb6829410152df84b2
 DIST scipy-1.4.1-html.zip 61414053 BLAKE2B e1f0c1a7a8941958512dcc3c0f40ef4a590bab0b44b33f842bc6e1c5d103c17f223d8b0a2f4e564f57645d601d4d74005c1ec605be2dd3bf4db19d2ac1f614d1 SHA512 9eeae83cd723d63aa1dc7a610ce3118cb68a2336be24cbfeaa8e57b34de413b2efa2fdad0978eb5bdac0ebca6b15f564b9509637efbd87d1007c969ae954e3ae
 DIST scipy-1.4.1-ref.pdf 41100747 BLAKE2B 8e56af69d0bffbe6eff73bfc5bb674aed3b80bdd80d59b58a1835f996c992306a059c2992d74c411e762490c526262753d33273613ed389928845c65eb6546b2 SHA512 76946f3b506fe22a595b70e5a418982257dd59db1a2e9af508cc1cab59d47ba4fc5951388e676f2a513043a6b3391ef853242e78d7feb99a6c21d19f6dca2b58
 DIST scipy-1.4.1.tar.gz 24555206 BLAKE2B e35f6234404839cbd24d463c8cc2f1ea66aed91534e700fd54a623df40d069b14fc220f96af04c78d13b773bfc5461559e59b0bd9b836d7953f9249ccd7cae54 SHA512 79407a2cbb4ba29c0941570181df4d7835e5791e50a3abef9b63c2fc5b15308a2e4964eb71cdebbee8cd2dcb8e497cf92fe50ee21fb12cac3013ea5e0466b25d
-EBUILD scipy-1.1.0.ebuild 3988 BLAKE2B eb0714420ffe87dcd9d8704316be2feb69e24c4f8c76ada3c6d4c87c7d8617d887f18b030e9dd907ce1b5eb4684932f72a987c2449a9dbcc45270e462e1b8b87 SHA512 85823a954133330fc038e7a9b936b1454d3a2e368d709041f0f9195b9bb839a2e3aeef2f0d2a942b09df265d04cc5d4b474377e57ca4281317340272bfffce16
-EBUILD scipy-1.4.1.ebuild 4023 BLAKE2B aea0614894314a155782ea43dd444828291b3ad3a537a8072e98d5e4adab932c577fa0c8c440c2d16dbb5b80dd660fedc2b5e27086b689ce9cc4ac7eb1b973c3 SHA512 b78d0d2722d35757938d607b02076e1999e41a25e1f59a6b5033c20e142ece4ec3476c6d68f3e4ffdc6ab258829fb0611a9da1cd119650397a09ac3219eee5a1
+EBUILD scipy-1.1.0.ebuild 4115 BLAKE2B 9444084b97ebd27c23e5bbaf6c650f1a0f3a0da7dd29f8b063c9168a4144928d10a76aa4cbce22e4608a68251ff5ace33fbb6e96a3bd6d294862b517cd354256 SHA512 4d7c8ee2129288b7308707b0aa6de8979b5f30b59f9d77e95b3813b25687dbf7a8344fdd0613e91f65220d59015623750778cf82f820fd4001d4146c99018947
+EBUILD scipy-1.4.1.ebuild 4150 BLAKE2B 4f7ee074825feb1c58c2d297b6817137c95b2c12b97112adfe4006996e6ca6a20325cc2b7e19c99ba09cf0dd9fc42cec9c917bc3abae0a89e4152a834326c9e6 SHA512 2f7473b792726c709f1a62b2d465168ffeba66891117c1d203f1dc2f1b2de6f9dfd945580e539ffdc2e5d8254bfcd0a05d5abdc0b1216b4e94a5b31f2adeb5bb
 MISC metadata.xml 1038 BLAKE2B a17718312d2d1ead8646e838b2704c14a9f21be8c59fbc0cd8544ab45bdb28005443be05f3a9f5671581f0f28e3cf7507131e2baad5e7b128a452d1ca3fae19e SHA512 2ee6a44a4f32d34f52eb1a0bb787907c31d22c15af597c8db8820df72cafcbba72201c5157b60dede7df4ff0ba48847e8f764c5a67a0b7efacabe1b9fa9bd74a
diff --git a/sci-libs/scipy/scipy-1.1.0.ebuild b/sci-libs/scipy/scipy-1.1.0.ebuild
index a676281fbac9..e57e5cd5b7b1 100644
--- a/sci-libs/scipy/scipy-1.1.0.ebuild
+++ b/sci-libs/scipy/scipy-1.1.0.ebuild
@@ -105,6 +105,12 @@ python_prepare_all() {
 	distutils-r1_python_prepare_all
 }
 
+python_configure_all() {
+	# bug 721860
+	test-flag-FC -fallow-argument-mismatch &&
+		append-fflags -fallow-argument-mismatch
+}
+
 python_compile() {
 	# FIXME: parallel python building fails, bug #614464
 	${EPYTHON} tools/cythonize.py || die
diff --git a/sci-libs/scipy/scipy-1.4.1.ebuild b/sci-libs/scipy/scipy-1.4.1.ebuild
index 8babb5d3237a..90fb741b4d73 100644
--- a/sci-libs/scipy/scipy-1.4.1.ebuild
+++ b/sci-libs/scipy/scipy-1.4.1.ebuild
@@ -110,6 +110,12 @@ python_prepare_all() {
 	distutils-r1_python_prepare_all
 }
 
+python_configure_all() {
+	# bug 721860
+	test-flag-FC -fallow-argument-mismatch &&
+		append-fflags -fallow-argument-mismatch
+}
+
 python_compile() {
 	# FIXME: parallel python building fails, bug #614464
 	export MAKEOPTS=-j1