gentoo auto-resync : 08:06:2023 - 15:45:39

5 files changed, 149 insertions, 0 deletions

diff --git a/sci-libs/Manifest.gz b/sci-libs/Manifest.gz
index d52f33d478eb..87bb5df919e6 100644
--- a/sci-libs/Manifest.gz
+++ b/sci-libs/Manifest.gz
diff --git a/sci-libs/dlib/Manifest b/sci-libs/dlib/Manifest
index 4c2d69a3f1c2..47a9d130c938 100644
--- a/sci-libs/dlib/Manifest
+++ b/sci-libs/dlib/Manifest
@@ -1,3 +1,5 @@
+DIST dlib-19.24.2.tar.gz 22252165 BLAKE2B cd6a911e16d9ff6cf94a4334e84983a9c48da42e3f696de20fb28a5bba9720507ec19ddc984bb753288f86359a1c19cdf15ed29f18c43769a1c17d3177d8dedf SHA512 a38a3079c169b16d81d7aca9fc294bcd63bd2dc1a21573f9141ca310542da3629b6523fa6f348be8b41bf5b478c0846a13a4c3fee77f1ac38dfbfc4a01effb57
 DIST dlib-19.24.tar.gz 10863367 BLAKE2B eda85c6ec38fcf212754aae2cdb68539425028735b5148a2f6668ac19f2583129585a7101b74fe202fbfa3d3d2f09e533805a82f8291540919a7eb11483812e8 SHA512 f6ef2fec0977782cdcc15c6340bd91e3471294332de391405f14d86e9fd0cfcc8195fbf5b702f8d269a90b06db23a8134d112ed3fcfb780ff0433d988c41d199
+EBUILD dlib-19.24.2.ebuild 2513 BLAKE2B a593d1d7842022e8b58650a1cfd9ed8b0bcd3b4c8e058e3846cf43fac4bce02664a6914274f783b49ad455edefa6eb066eb073d998d1f86b6ab5ae9aa91426b4 SHA512 45a7c8e72572a336d874cabd125695028c369dedee5974b73ae3f7285e789c43f1e02f09b93548d40786b83f80ededa1dee6ebabed1cdf858dab376407b15ac2
 EBUILD dlib-19.24.ebuild 2513 BLAKE2B 8faf0274b9ef05963a34b12c2bd47fdf89999d0af7cde697ad671b5de39b565a0b23ca555c1824575781e6bd2cf9fe2cbe8e55673e74ecc14e67ec5ab768b342 SHA512 d3934515077f1d3810bf7dbec5c37b480c615ce24075ef0048c3076eeaf1122d32f1d241620f77231c2fc6c508bb074b9bf886055e639a77298060b3c8eb7b6a
 MISC metadata.xml 1003 BLAKE2B 3c4e623c6abbd4d1ec8a9402009b2d01e6edb547bfd24f03c27853d0386170833553feecc7b0f6b751a3ad4e52f0575a4a87fbcf801a0952fc3d4e5c77645a43 SHA512 2c59cabd74e9433b9b31b96d1f476c2c9200cce51960c09de5ebd7aabbfe4cff1f4449a6a9ecaaf1907f58dd12c04039a9f58f69f2d036bc18bf82b4438cbc01
diff --git a/sci-libs/dlib/dlib-19.24.2.ebuild b/sci-libs/dlib/dlib-19.24.2.ebuild
new file mode 100644
index 000000000000..dd936a0dc155
--- /dev/null
+++ b/sci-libs/dlib/dlib-19.24.2.ebuild
@@ -0,0 +1,106 @@
+# Copyright 1999-2023 Gentoo Authors
+# Distributed under the terms of the GNU General Public License v2
+
+EAPI=8
+
+PYTHON_COMPAT=( python3_{9..11} )
+DISTUTILS_USE_PEP517=setuptools
+DISTUTILS_OPTIONAL=1
+inherit cmake cuda distutils-r1
+
+DESCRIPTION="Numerical and networking C++ library"
+HOMEPAGE="http://dlib.net/"
+SRC_URI="https://github.com/davisking/dlib/archive/v${PV}.tar.gz -> ${P}.tar.gz"
+
+LICENSE="Boost-1.0"
+SLOT="0/${PV}"
+KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux"
+IUSE="cblas cuda debug examples gif jpeg lapack mkl png python sqlite test X cpu_flags_x86_avx cpu_flags_x86_sse2 cpu_flags_x86_sse4_1"
+REQUIRED_USE="python? ( png ${PYTHON_REQUIRED_USE} )"
+RESTRICT="!test? ( test )"
+
+# doc needs a bunch of deps not in portage
+RDEPEND="
+	cblas? ( virtual/cblas )
+	cuda? ( dev-libs/cudnn:= )
+	gif? ( media-libs/giflib:= )
+	jpeg? ( media-libs/libjpeg-turbo:0= )
+	lapack? ( virtual/lapack )
+	mkl? ( sci-libs/mkl )
+	png? ( media-libs/libpng:0= )
+	python? ( ${PYTHON_DEPS} )
+	sqlite? ( dev-db/sqlite:3 )
+	X? ( x11-libs/libX11 )"
+DEPEND="${RDEPEND}"
+BDEPEND="
+	python? (
+		${DISTUTILS_DEPS}
+		test? (
+			dev-python/pytest[${PYTHON_USEDEP}]
+			dev-python/pip[${PYTHON_USEDEP}]
+		)
+	)
+"
+
+DOCS=( docs/README.txt )
+
+src_prepare() {
+	use cuda && cuda_src_prepare
+	cmake_src_prepare
+	use python && distutils-r1_src_prepare
+}
+
+src_configure() {
+	local mycmakeargs=(
+		-DDLIB_ENABLE_ASSERTS=$(usex debug)
+		-DDLIB_ENABLE_STACK_TRACE=$(usex debug)
+		-DDLIB_GIF_SUPPORT=$(usex gif)
+		-DDLIB_JPEG_SUPPORT=$(usex jpeg)
+		-DDLIB_PNG_SUPPORT=$(usex png)
+		-DDLIB_LINK_WITH_SQLITE3=$(usex sqlite)
+		-DDLIB_NO_GUI_SUPPORT=$(usex X OFF ON)
+		-DDLIB_USE_BLAS=$(usex cblas)
+		-DDLIB_USE_CUDA=$(usex cuda)
+		-DDLIB_USE_LAPACK=$(usex lapack)
+		-DUSE_AVX_INSTRUCTIONS=$(usex cpu_flags_x86_avx)
+		-DUSE_SSE2_INSTRUCTIONS=$(usex cpu_flags_x86_sse2)
+		-DUSE_SSE4_INSTRUCTIONS=$(usex cpu_flags_x86_sse4_1)
+	)
+	cmake_src_configure
+	use python && distutils-r1_src_configure
+}
+
+src_compile() {
+	cmake_src_compile
+	use python && distutils-r1_src_compile
+}
+
+src_test() {
+	(
+		local BUILD_DIR="${BUILD_DIR}"/dlib/test
+		mkdir -p "${BUILD_DIR}" || die
+		cd "${BUILD_DIR}" >/dev/null || die
+
+		local CMAKE_USE_DIR="${S}"/dlib/test
+		cmake_src_configure
+		cmake_build
+
+		./dtest --runall || die "Tests failed"
+	)
+
+	use python && distutils-r1_src_test
+}
+
+python_test() {
+	epytest
+}
+
+src_install() {
+	cmake_src_install
+	use python && distutils-r1_src_install
+
+	if use examples; then
+		dodoc -r examples
+		docompress -x /usr/share/doc/${PF}
+	fi
+}
diff --git a/sci-libs/libcifpp/Manifest b/sci-libs/libcifpp/Manifest
index a8b2682e395e..b2ad06140b4f 100644
--- a/sci-libs/libcifpp/Manifest
+++ b/sci-libs/libcifpp/Manifest
@@ -1,5 +1,8 @@
 AUX libcifpp-5.0.8-missing-include.patch 553 BLAKE2B 0bcda2161396c3a863f2b4bc0074ac1298c57fa67cdc7771c05bd56b99e8d88a2124dc361aeef99e4fe2aa06f8ba1af9bccd4f2c20c90ac3a8e8fcd0f211d6fc SHA512 deb17752ac3bf005e8936ab5894f0b5ca3eb8fcb59a41dff511111b0eddf88ff983504629888904ceaca17826710609add09e0075bf5c8726767d2a8589b1e90
 DIST libcifpp-5.0.8-components.cif.gz 89984770 BLAKE2B d42147d4da56589ac30de9fc3cdacd43e036f548eebf80a19d878c4bf0be535578eec6b78625e1ba60db53090ce5e4b9a3e59b06705f208b660fb2e37e79d1c2 SHA512 5f9705714816656aa910b571d77966926d66b2724136119857138975f8be5bb2e889e0c9b28ef1340a72857afb5831dba529b96e8dfc796f739e24b0dcab0424
 DIST libcifpp-5.0.8.tar.gz 1873629 BLAKE2B 07257a898b1253995880fea9b416b3a7681122b544f8397d353fda4069c33f4a6c2d5cf2210983acf68dc56cb27a20d780461c7c2485a445855e7b45cccd326d SHA512 4ea67fa4a93218fe96289de95591faa9411508e41e308f4ff470033fb0deb4029a86eafb7ba9295807fe3b350e8cc9f2267f7735ee8b1dbb431ee0275db2b8cc
+DIST libcifpp-5.1.0.1-components.cif.xz 58001076 BLAKE2B 4d838e47c74540af54256f6124bd79c9c372c6768eeeabc620b54e1b2c49b2c2adc0b937f195f9544b9f2362fb60c209fb74f88c451ba6d50fe5da5f15ba768b SHA512 e7933a78a61e40c4b2e2aedfda0f36c79939fadc71c78cfde59fcec4de5c2b6c9cf1dbccc383a2f0bbf48744c776cdbb5e7c862e47a6fd2ec229c811caa9b5bc
+DIST libcifpp-5.1.0.1.tar.gz 2242975 BLAKE2B 7cada39ed6096ee12e662422d1676dadbf0ae71958c206ef4105daeeaaa9b14cbf17143c3baf4e2914e8289801667829af1361d643846827044d7c8e1eb15fa2 SHA512 9ca3d7db5889d1baf713475fbfeaf355f45ecb139c838da6348d4bb054c2241204499d3f46e4d45075f2d60f6c48e29866ccf2994c26098b303573d7ba39204d
 EBUILD libcifpp-5.0.8.ebuild 975 BLAKE2B 7e001c18b1feea681575f3c4b60b07602cd270295a8b16ee722f01fdf46e4f04d53e5b5748c64341c6d01969ddd2258f0beb513c96c93f6933eab6d07169f26e SHA512 a3a32d9f577a550abf60b0eef1500ecc5bd56af880bc9f1d8777709320ad485e83727a9f2d3e7069b552b803206245f8fbe56189a5ee43489a33f88d8a821b4a
+EBUILD libcifpp-5.1.0.1.ebuild 890 BLAKE2B 62a828f715d25d5368f94ad7e226d19caf45b0c37d311e5f6dcd13a3ec5224f296b69dc074891462063ceb92ee1153a7a1552731bef2800c914b201f76bca916 SHA512 0714de6553e370fb4ddb3d50c4e8fdfb227b671a581ef6d1a21257aee932ba816b3f41600c398cef4cd8ffbf99c7ab7824e79af66ab0f8ce877d585614444aad
 MISC metadata.xml 299 BLAKE2B 88091a7fbc350db0c22800bcd0de80ec406f7b8a0187b29d8660978384179f8194f7aa794bf0bd3b3f4ab68ac662ca62479319e218d2622e2a3e470653848251 SHA512 e6bc610ae1cf40584ba3067ece0c0c85d08ad0bbb99f5ecd8281c41b04ff932db838926a6ff238794ff46eb8035eb57c750e088bd3f164180952a9e597544e14
diff --git a/sci-libs/libcifpp/libcifpp-5.1.0.1.ebuild b/sci-libs/libcifpp/libcifpp-5.1.0.1.ebuild
new file mode 100644
index 000000000000..8d30793f975e
--- /dev/null
+++ b/sci-libs/libcifpp/libcifpp-5.1.0.1.ebuild
@@ -0,0 +1,38 @@
+# Copyright 1999-2023 Gentoo Authors
+# Distributed under the terms of the GNU General Public License v2
+
+EAPI=8
+inherit cmake
+
+DESCRIPTION="Code to work with mmCIF and PDB files"
+HOMEPAGE="https://github.com/PDB-REDO/libcifpp"
+# Update components file on every bump
+# ftp://ftp.wwpdb.org/pub/pdb/data/monomers/components.cif.gz
+SRC_URI="
+	https://github.com/PDB-REDO/${PN}/archive/refs/tags/v${PV}.tar.gz -> ${P}.tar.gz
+	https://dev.gentoo.org/~pacho/${PN}/${P}-components.cif.xz
+"
+
+LICENSE="BSD-2"
+SLOT="0"
+KEYWORDS="~amd64 ~x86"
+IUSE="test"
+RESTRICT="!test? ( test )"
+
+DEPEND="
+	dev-cpp/eigen:3
+	dev-libs/boost:=
+"
+RDEPEND="${DEPEND}"
+
+src_configure() {
+	cp "${WORKDIR}"/${P}-components.cif data/components.cif || die
+
+	local mycmakeargs=(
+		-DBUILD_SHARED_LIBS=ON
+		-DCIFPP_DOWNLOAD_CCD=OFF
+		-DCIFPP_INSTALL_UPDATE_SCRIPT=OFF
+		-DENABLE_TESTING="$(usex test)"
+	)
+	cmake_src_configure
+}