gentoo auto-resync : 16:08:2023 - 09:29:11

3 files changed, 258 insertions, 0 deletions

diff --git a/sci-libs/Manifest.gz b/sci-libs/Manifest.gz
index cdc60467d40c..941621a0fe27 100644
--- a/sci-libs/Manifest.gz
+++ b/sci-libs/Manifest.gz
diff --git a/sci-libs/trilinos/Manifest b/sci-libs/trilinos/Manifest
index 6eb5d34bfcf2..b761787df383 100644
--- a/sci-libs/trilinos/Manifest
+++ b/sci-libs/trilinos/Manifest
@@ -4,8 +4,10 @@ DIST trilinos-13.4.0.tar.gz 168733479 BLAKE2B 3c4a1c89b792ec771c6347eebb6bb54a82
 DIST trilinos-13.4.1.tar.gz 168720416 BLAKE2B 5201c36aa998045f4eab99b67fce25f9a2f2a9524b8ca1147cd8db9ccc306e3df61336df3b2ee981317c8defbae2df9e36546a0e5ddfed3142213e437e4dfba0 SHA512 9c0fb3af2fa625cd0af1309bfa61c212e12657820707348c81355d506e07f540da5e42aa30237fbc80adf257bb636029345f248abaf7ef96fcdaed1c28ec3a19
 DIST trilinos-14.0.0.tar.gz 179086187 BLAKE2B 0e0c3e3fa4b88164cd7e90720ec42eb007f8e89734e5537a7eba1f17754faf30c21fa1d77f7e8a7968bdb8bb230596a1adc74f8170577fd7b4eccb2e88c5b8f6 SHA512 b08fcf4f6bf2605267c44c038f352949e5bfe14b853de77e4c80e28f66c088ead1699b1e49f8475f1b98ce5a21238b98a299e760f1373e585c78b65120fa18e5
 DIST trilinos-14.2.0.tar.gz 178867695 BLAKE2B 07ff61775399014091aae9c14ad12a69ab19853bc3489c15775490aa3f6e8ae868ac4e90bf046d10bf1ecb1d5558992f0afb0ce656f947336559fcf10085c038 SHA512 c676ff2b59904dc05a0ff434dd164bc96076999a5851c160c5851c124d3c519dd0cc3f088eba19f2000c7d1c2377f4efb2b2b8f9f3ee641b2180f3b99b28ea0b
+DIST trilinos-14.4.0.tar.gz 188325969 BLAKE2B 909e3ebe229d035263d835e0d68977516d2a5df168785021fe300f7904e149586a82a6dba271cc1472455472397ee5467443244fb68fb27c00cf4e9b3d10a282 SHA512 497fc4fb4ab4338fffef7111635f3dc3b12cb7302bc3f56bafb5cc75b7c68e94cc22fcacd9dd625803a0f38e4fbce5105cab61df76e033a4581568c36a53fe8a
 EBUILD trilinos-13.4.0-r3.ebuild 7360 BLAKE2B e166d328c767fd6a0ca36544e3911d0076f47dcf3c4a169a4dfea2d87871bd0a4f157bb59fe8afaa78f13264d3a3e200c488e6f05b6558c12153fa83f20ef033 SHA512 9a1c3cdab829e20806a0f4ccd95c41910fc7358e08db8ef20a7042e059af91945a5628e5dd4674560b43ba4bdd31ec38d2dab228374e25fa800f3f7223ba3816
 EBUILD trilinos-13.4.1.ebuild 7368 BLAKE2B a1742a23f74d9c72e83def6203aadb6e263334fe4d6c8099d71b169aa7948b86cab1c6626e239967bedfb2f1f15ad590c7dfc53971911a0abf56f0d2c8b4c163 SHA512 2db0df5e4165e21235dfa8c70e007c254c0f706ba50c35f8611c7bc1e477e2cfd2ce367f9da7bfb02c2e02eceec097c115ae42644a7149a21b403f1d84b240fc
 EBUILD trilinos-14.0.0.ebuild 7696 BLAKE2B 2cb1eae14a4f94dca45046dfbf527e399ed07be857e81916fb07e222955ba60b0083b05ab019d06c87590c2687abae53e7dac0e49e4b696cb07543bc3f26c577 SHA512 1a3046aa3e5f31dfc473e6b198d982115cbdd5c39eea341867be4cf6beab811e417ae68fa6f6fb8bca63043c462237c6ef6e634129fd3c050bdb9f96153b06d1
 EBUILD trilinos-14.2.0.ebuild 7646 BLAKE2B d514d14f141fc3aac82c17866e4d60443eda9afd6e0b5b992ec48605929a652701636596e7f17d769595e66b276ebf26c69a8fc1820b0e011fa1749f7c0dbcdb SHA512 ef3c1cba97c2d942c4df4601fa699b826578723b0ee1fd310e52282ccd6d86d7670c901aef4672945cb473e638546afa877e7969a6e6190bb8011e7e99784b6a
+EBUILD trilinos-14.4.0.ebuild 7577 BLAKE2B 73773263b8e4244fd5ca88885830cebaac586d2bb66379d03792213408b656fe98e1ff5d9c9008205735ed3228662408b3c476026a0cc6be5a7e1a15864a97ee SHA512 bf477dacd96d282313bc44c4f615a5687a696b4ecb7a027ea250131eba0655135450d6837545979344556b6dcd0887725660f9f6c4a5116500b9197dfa62a24a
 MISC metadata.xml 2821 BLAKE2B 44e03179620d8db5229793dabfb70e33dd81d686ee430b46d376dc13b96fd3a1b47123c53001e39973b776e79db2326b280d964ab9054aa3a58c1532f9b9b19c SHA512 7805ec93f2bb73749c5881785cb6664c8d5878fed68c5c7b11ba0d28f2dc33a52f571bede906e7a459d0f17c88dae66305ad5b1ce7382783680c82d8d7241ef2
diff --git a/sci-libs/trilinos/trilinos-14.4.0.ebuild b/sci-libs/trilinos/trilinos-14.4.0.ebuild
new file mode 100644
index 000000000000..8e143ef76619
--- /dev/null
+++ b/sci-libs/trilinos/trilinos-14.4.0.ebuild
@@ -0,0 +1,256 @@
+# Copyright 1999-2023 Gentoo Authors
+# Distributed under the terms of the GNU General Public License v2
+
+EAPI=8
+
+CMAKE_MAKEFILE_GENERATOR=emake
+inherit cmake toolchain-funcs
+
+DESCRIPTION="Scientific library collection for large scale problems"
+HOMEPAGE="http://trilinos.sandia.gov/"
+MY_PV="${PV//\./-}"
+PATCHSET="r0"
+SRC_URI="https://github.com/${PN}/Trilinos/archive/${PN}-release-${MY_PV}.tar.gz -> ${P}.tar.gz"
+
+KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux"
+LICENSE="BSD LGPL-2.1"
+SLOT="0"
+
+IUSE="
+	adolc all-packages arprec clp cuda eigen glpk gtest hdf5 hwloc hypre
+	matio metis mkl mumps netcdf openmp petsc qd scalapack scotch sparse
+	superlu taucs tbb test threads tvmet yaml zlib X
+"
+
+# TODO: fix export cmake function for tests
+RESTRICT="test"
+
+RDEPEND="
+	!dev-cpp/kokkos
+	dev-libs/boost:=
+	sys-libs/binutils-libs:=
+	virtual/blas
+	virtual/lapack
+	virtual/mpi
+	adolc? ( sci-libs/adolc )
+	arprec? ( sci-libs/arprec )
+	clp? ( sci-libs/coinor-clp )
+	cuda? ( >=dev-util/nvidia-cuda-toolkit-3.2 )
+	eigen? ( dev-cpp/eigen:3 )
+	glpk? ( sci-mathematics/glpk )
+	gtest? ( dev-cpp/gtest )
+	hdf5? ( sci-libs/hdf5:=[mpi] )
+	hypre? ( sci-libs/hypre:= )
+	hwloc? ( sys-apps/hwloc:= )
+	matio? ( sci-libs/matio )
+	mkl? ( sci-libs/mkl )
+	metis? ( sci-libs/metis )
+	mumps? ( sci-libs/mumps )
+	netcdf? ( sci-libs/netcdf:= )
+	petsc? ( sci-mathematics/petsc )
+	qd? ( sci-libs/qd )
+	scalapack? ( sci-libs/scalapack )
+	scotch? ( sci-libs/scotch:= )
+	sparse? ( sci-libs/cxsparse sci-libs/umfpack )
+	superlu? ( sci-libs/superlu:= )
+	taucs? ( sci-libs/taucs )
+	tbb? ( dev-cpp/tbb:= )
+	tvmet? ( dev-libs/tvmet )
+	yaml? ( dev-cpp/yaml-cpp:= )
+	zlib? ( sys-libs/zlib )
+	X? ( x11-libs/libX11 )"
+DEPEND="${RDEPEND}
+	virtual/pkgconfig"
+
+S="${WORKDIR}/Trilinos-${PN}-release-${MY_PV}"
+
+PATCHES=(
+)
+
+pkg_pretend() {
+	[[ ${MERGE_TYPE} != binary ]] && use openmp && tc-check-openmp
+}
+
+pkg_setup() {
+	[[ ${MERGE_TYPE} != binary ]] && use openmp && tc-check-openmp
+}
+
+trilinos_conf() {
+	local dirs libs d
+	for d in $($(tc-getPKG_CONFIG) --libs-only-L $1); do
+		dirs="${dirs};${d:2}"
+	done
+	[[ -n ${dirs} ]] && mycmakeargs+=( "-D${2}_LIBRARY_DIRS=${dirs:1}" )
+	for d in $($(tc-getPKG_CONFIG) --libs-only-l $1); do
+		libs="${libs};${d:2}"
+	done
+	[[ -n ${libs} ]] && mycmakeargs+=( "-D${2}_LIBRARY_NAMES=${libs:1}" )
+	dirs=""
+	for d in $($(tc-getPKG_CONFIG) --cflags-only-I $1); do
+		dirs="${dirs};${d:2}"
+	done
+	[[ -n ${dirs} ]] && mycmakeargs+=( "-D${2}_INCLUDE_DIRS=${dirs:1}" )
+}
+
+#
+# The following packages are currently disabled:
+#  - Adelus/Zadelus due to underlinkage.
+#  - Moertel due to underlinkage
+#  - SEACAS is incompatible with netcdf, see
+#    https://github.com/trilinos/Trilinos/tree/master/packages/seacas#netcdf
+#
+
+src_configure() {
+	local mycmakeargs=(
+		-DBUILD_SHARED_LIBS=ON
+		-DCMAKE_INSTALL_PREFIX="${EPREFIX}"
+		-DCMAKE_SKIP_INSTALL_RPATH=ON
+		-DCMAKE_INSTALL_RPATH_USE_LINK_PATH=OFF
+		-DTrilinos_INSTALL_INCLUDE_DIR="${EPREFIX}/usr/include/trilinos"
+		-DTrilinos_INSTALL_LIB_DIR="${EPREFIX}/usr/$(get_libdir)/trilinos"
+		-DTrilinos_ENABLE_ALL_PACKAGES="$(usex all-packages)"
+		-DTrilinos_ENABLE_Adelus=OFF
+		-DTrilinos_ENABLE_Moertel=OFF
+		-DTrilinos_ENABLE_PyTrilinos=OFF
+		-DTrilinos_ENABLE_SEACAS=OFF
+		-DTrilinos_ENABLE_Amesos=ON
+		-DTrilinos_ENABLE_AztecOO=ON
+		-DTrilinos_ENABLE_EpetraExt=ON
+		-DTrilinos_ENABLE_Epetra=ON
+		-DTrilinos_ENABLE_Ifpack=ON
+		-DTrilinos_ENABLE_ML=ON
+		-DTrilinos_ENABLE_MueLu=ON
+		-DTrilinos_ENABLE_OpenMP="$(usex openmp)"
+		-DTrilinos_ENABLE_ROL=ON
+		-DTrilinos_ENABLE_Sacado=ON
+		-DTrilinos_ENABLE_Teuchos=ON
+		-DTrilinos_ENABLE_Tpetra=ON
+		-DTrilinos_ENABLE_Zoltan=ON
+		-DTrilinos_ENABLE_TESTS="$(usex test)"
+		-DTPL_ENABLE_BinUtils=ON
+		-DTPL_ENABLE_BLAS=ON
+		-DTPL_ENABLE_LAPACK=ON
+		-DTPL_ENABLE_MPI=ON
+		-DTPL_ENABLE_ADOLC="$(usex adolc)"
+		-DTPL_ENABLE_AMD="$(usex sparse)"
+		-DTPL_ENABLE_ARPREC="$(usex arprec)"
+		-DTPL_ENABLE_BLACS="$(usex scalapack)"
+		-DTPL_ENABLE_BoostLib=ON
+		-DTPL_ENABLE_Boost=ON
+		-DTPL_ENABLE_Clp="$(usex clp)"
+		-DTPL_ENABLE_CSparse="$(usex sparse)"
+		-DTPL_ENABLE_CUDA="$(usex cuda)"
+		-DTPL_ENABLE_CUSPARSE="$(usex cuda)"
+		-DTPL_ENABLE_Eigen="$(usex eigen)"
+		-DTPL_ENABLE_GLPK="$(usex glpk)"
+		-DTPL_ENABLE_gtest="$(usex gtest)"
+		-DTPL_ENABLE_HDF5="$(usex hdf5)"
+		-DTPL_ENABLE_HWLOC="$(usex hwloc)"
+		-DTPL_ENABLE_HYPRE="$(usex hypre)"
+		-DTPL_ENABLE_Matio="$(usex matio)"
+		-DTPL_ENABLE_METIS="$(usex metis)"
+		-DTPL_ENABLE_MKL="$(usex mkl)"
+		-DTPL_ENABLE_MUMPS="$(usex mumps)"
+		-DTPL_ENABLE_Netcdf="$(usex netcdf)"
+		-DTPL_ENABLE_PARDISO_MKL="$(usex mkl)"
+		-DTPL_ENABLE_PETSC="$(usex petsc)"
+		-DTPL_ENABLE_Pthread="$(usex threads)"
+		-DTPL_ENABLE_QD="$(usex qd)"
+		-DTPL_ENABLE_SCALAPACK="$(usex scalapack)"
+		-DTPL_ENABLE_Scotch="$(usex scotch)"
+		-DTPL_ENABLE_SuperLU="$(usex superlu)"
+		-DTPL_ENABLE_TAUCS="$(usex taucs)"
+		-DTPL_ENABLE_TBB="$(usex tbb)"
+		-DTPL_ENABLE_Thrust="$(usex cuda)"
+		-DTPL_ENABLE_TVMET="$(usex tvmet)"
+		-DTPL_ENABLE_UMFPACK="$(usex sparse)"
+		-DTPL_ENABLE_X11="$(usex X)"
+		-DTPL_ENABLE_yaml-cpp="$(usex yaml)"
+		-DTPL_ENABLE_Zlib="$(usex zlib)"
+	)
+
+	#
+	# Make sure some critical configuration options are always set
+	# correctly independently of what Trilinos dependency resolver thinks
+	# it should be doing.
+	#
+	local mycmakeargs+=(
+		-DAmesos2_ENABLE_LAPACK=ON
+		-DAmesos2_ENABLE_MUMPS=OFF
+		-DTpetra_INST_SERIAL=ON
+	)
+
+	use eigen && \
+		mycmakeargs+=(
+		-DEigen_INCLUDE_DIRS="${EPREFIX}/usr/include/eigen3"
+	)
+	use hypre && \
+		mycmakeargs+=(
+		-DHYPRE_INCLUDE_DIRS="${EPREFIX}/usr/include/hypre"
+	)
+	use scotch && \
+		mycmakeargs+=(
+		-DScotch_INCLUDE_DIRS="${EPREFIX}/usr/include/scotch"
+	)
+
+	# cxsparse is a rewrite of csparse + extras
+	use sparse && \
+		mycmakeargs+=(
+		-DCSparse_LIBRARY_NAMES="cxsparse"
+	)
+
+	# mandatory blas and lapack
+	trilinos_conf blas BLAS
+	trilinos_conf lapack LAPACK
+	use superlu && trilinos_conf superlu SuperLU
+	use metis && trilinos_conf metis METIS
+
+	# blacs library is included in scalapack these days
+	if use scalapack; then
+		trilinos_conf scalapack SCALAPACK
+		mycmakeargs+=(
+			-DBLACS_LIBRARY_NAMES="scalapack"
+			-DBLACS_INCLUDE_DIRS="${EPREFIX}/usr/include/blacs"
+		)
+	fi
+
+	#
+	# Make sure we use the compiler wrappers in order to build trilinos.
+	#
+	[ ! -z "${CC}"] && export OMPI_CC="${CC}" MPICH_CC="${CC}" && tc-export OMPI_CC MPICH_CC
+	[ ! -z "${CXX}"] && export OMPI_CXX="${CXX}" MPICH_CXX="${CXX}" && tc-export OMPI_CXX MPICH_CXX
+	export CC=mpicc CXX=mpicxx && tc-export CC CXX
+
+	# Trilinos needs a custom build type:
+	local CMAKE_BUILD_TYPE=Release
+
+	cmake_src_configure
+}
+
+src_install() {
+	cmake_src_install
+
+	# Clean up the mess:
+
+	# Let us move the bin directory out of the way to avoid potential
+	# clashes due to very generically named binaries such as
+	# »nvcc_wrapper«, etc.
+	mv "${ED}"/bin "${ED}/usr/$(get_libdir)"/trilinos || die "mv failed"
+
+	# Move the cmake directory to the right location:
+	mkdir -p "${ED}/usr/$(get_libdir)"/cmake
+	mv "${ED}/usr/$(get_libdir)"/trilinos/cmake/* "${ED}/usr/$(get_libdir)"/cmake || die "mv failed"
+	# Fix up include paths:
+	sed -i -e 's#external_packages#trilinos/external_packages#g' \
+		"${ED}/usr/$(get_libdir)"/cmake/**/*.cmake || die "sed failed"
+	rmdir "${ED}/usr/$(get_libdir)/trilinos/cmake" || die "rmdir failed"
+
+	# Register $(get_libdir)/trilinos in LDPATH so that the dynamic linker
+	# has a chance to pick up the libraries, also add Trilinos' binaries ot
+	# the PATH environment variable.
+	cat >> "${T}"/99trilinos <<- EOF
+	LDPATH="${EPREFIX}/usr/$(get_libdir)/trilinos"
+	PATH="${EPREFIX}/usr/$(get_libdir)/trilinos/bin"
+	EOF
+	doenvd "${T}"/99trilinos
+}