gentoo auto-resync : 18:02:2024 - 17:39:04

7 files changed, 50 insertions, 3 deletions

diff --git a/sci-libs/Manifest.gz b/sci-libs/Manifest.gz
index cd87ed9f712a..b4b7d4ed5d7d 100644
--- a/sci-libs/Manifest.gz
+++ b/sci-libs/Manifest.gz
diff --git a/sci-libs/fflas-ffpack/Manifest b/sci-libs/fflas-ffpack/Manifest
index fd50f7b2f8c1..6e86a8d116a8 100644
--- a/sci-libs/fflas-ffpack/Manifest
+++ b/sci-libs/fflas-ffpack/Manifest
@@ -5,8 +5,9 @@ AUX fflas-ffpack-2.4.3-no-fabi-version.patch 1170 BLAKE2B 90e9c080291251d4a5231c
 AUX fflas-ffpack-2.4.3-no-test-echelon.patch 1374 BLAKE2B f62631e7e4e358584a826fb5ec3e9f36b892b5f0636c965677c55a97901ffefe3ad47dea79c46d65bb3090668e335d4f7cfc04cd12bc2b72f1c3c7db45833108 SHA512 9c9ee6e7df7d04fcc5ffc84cd3a2dae08e960540371671cc79c4eb99606bc1fd150a6e0ad96f16a51904ff83fabe69bdc9bfc6e9603855fe21acea535fc31dc1
 AUX fflas-ffpack-2.4.3-no-test-fgesv.patch 1268 BLAKE2B 51c0cf74dac9b296a944e918475807e97a2cf71f066cda9c067b63b344e260b9fbb9ea2851db7ac2170e2b239c0778be0c9a99e0efbbbb9215df921197208784 SHA512 9a57cba58a6bab69092c4d335d92994651bb51d2f4e867d4f0396813e14f492d720232779615299b5203603bb76553ec8a4881ffb9677c349f22c0ef3975df0d
 AUX fflas-ffpack-2.5.0-blaslapack.patch 2009 BLAKE2B d6a6e8cbc3b57578efae7638f3a3bd62b233047f83f1c40ea5b5aab08b7f0f372cec1c7f769ca03c21270c9d7380622131d166d6fcef921941fc320c88cbb81f SHA512 cb584bd58a712bd28b95a99ee489fd0fcd1e349559d96498372674e6b86f6e699bcbc7a1db806a53bd6aff4358899754f0fead8b8b9d1414256f9dce15c6e81d
+AUX fflas-ffpack-2.5.0-no-test-fsyr2k.patch 867 BLAKE2B 447ffa94a3688e034727eb6feba0c9feb012a6cf09f0ff3d3a52e6ee7cf8565ad4d2b255c4562c062235ee0eda3ba8b7f15b9572f07c94af7b7f24fe524086df SHA512 05266956377cd16aa7e5e18882d9b86069618a29f981da33276f9ed87e2f0d34a5b09e608863533abf55297c4c8554d7a2b6593e455c90676a4ff3fff810df34
 DIST fflas-ffpack-2.4.3.tar.gz 1059033 BLAKE2B e416429bb426a81cf9c25d54c83380ff9a9d658c711da06e6359d968843d4d9d26cf8389379f9ad4a5cbcee93e0afc9fe0497bb7a8f190e0c72c0b1f7b67de18 SHA512 c7620ba5a92e4114a581a6bea32267f9d5a9f0eb7e23fc0a7a97ce4b8124bb7b29f89ff2ad6ad270d97c76489625b57a354e581905b74ee57b35f4ca3e196a44
 DIST fflas-ffpack-2.5.0.tar.gz 1098354 BLAKE2B 34b0cd218e83a71c6540b1768c8231246a0dc360eb7e2353a923b5870d228e702291de14b0dc3e7c5055727fbd62e2bc1bd1d2ac432dd99df978a1edb513bfc0 SHA512 6753022f27d354160f5eb436c713002f61d24e9a942f2463e36bf324b19ec096f34dd9cacb8529ba566f245f88fa303dcfb448a40d0c39d340f7c337cd1788a4
 EBUILD fflas-ffpack-2.4.3-r3.ebuild 2228 BLAKE2B fbb0b1ad23f85a77ed93175a1c8d8d9426a2c931e6fe935a33117291a77d0d20c2773e7d286f944796f222c5234ddb60be21d6aa61c20f9d97995e18fe05fd09 SHA512 6a0eb0437c2cdbcc064c71487edf8d7a8ea3c79e8eca641c428b2412d9480300ab736414b9cb2d870239d17b4edfaaa17d60afabadb412b255995c658e9115f5
-EBUILD fflas-ffpack-2.5.0-r1.ebuild 1219 BLAKE2B 34b3f60ba2cbd67531025566d3b6d7ff9c10df88240d3a408bb46936a3384557140ae14651b612833aab428c8638af2071287642545efb6dcb8f0bb46041828a SHA512 05e26c7602490f6e772fbb2a76c0a504999c0b8a0e1c0b519cb4f4d8163b90103943dde545bf8deb343eafb7499d4b131ae9c2a0069811d21865b16364674a1c
+EBUILD fflas-ffpack-2.5.0-r1.ebuild 1267 BLAKE2B 33e913ee3f5c4bcbab7ecdbdef9554ec03941bc3bd3cf0b2b276c1968a42240c8b0d7af9e54cd02362b446fd31c4941fc2fad41a5fe7709279ba5b46c75b79d8 SHA512 f3f165fa08f55eba190921d0174cd7ca99080fb0967142cc5ef8a25540633d02ffddae8831eb46555a285c2080a032275b041e77c05566261fbd8cf63df680ae
 MISC metadata.xml 1492 BLAKE2B 46a6b13fb1bae6f2aa43a9d7a96c7882d4d7de4b885a4ac92f320f72ce3076ad820c4c5f75c0f2d60334801d2764c20524ea26c1cc6c9975be13e00906708927 SHA512 fc6d90e2945f67a32594f601df69952baec0821d1e529a03c8dc332723848ca531f747efe7c30ea00885c4c4a081cdb81c0ea05085e7ca3acd7db304bb4f468b
diff --git a/sci-libs/fflas-ffpack/fflas-ffpack-2.5.0-r1.ebuild b/sci-libs/fflas-ffpack/fflas-ffpack-2.5.0-r1.ebuild
index 90005f9a7fc4..46851e065012 100644
--- a/sci-libs/fflas-ffpack/fflas-ffpack-2.5.0-r1.ebuild
+++ b/sci-libs/fflas-ffpack/fflas-ffpack-2.5.0-r1.ebuild
@@ -27,6 +27,7 @@ PATCHES=(
 	"${FILESDIR}/${PN}-2.5.0-blaslapack.patch"
 	"${FILESDIR}/${PN}-2.4.3-no-test-echelon.patch"
 	"${FILESDIR}/${PN}-2.4.3-fix-pc-libdir.patch"
+	"${FILESDIR}/${PN}-2.5.0-no-test-fsyr2k.patch"
 )
 
 pkg_pretend() {
diff --git a/sci-libs/fflas-ffpack/files/fflas-ffpack-2.5.0-no-test-fsyr2k.patch b/sci-libs/fflas-ffpack/files/fflas-ffpack-2.5.0-no-test-fsyr2k.patch
new file mode 100644
index 000000000000..102f5f7dd90b
--- /dev/null
+++ b/sci-libs/fflas-ffpack/files/fflas-ffpack-2.5.0-no-test-fsyr2k.patch
@@ -0,0 +1,30 @@
+From 59ba369aee228b0d166cd7f86d365b17a0104777 Mon Sep 17 00:00:00 2001
+From: Michael Orlitzky <michael@orlitzky.com>
+Date: Sun, 18 Feb 2024 07:39:09 -0500
+Subject: [PATCH 1/1] tests/Makefile.am: disable test-fsyr2k
+
+We have a report of this failing on Gentoo, and it's unlikely to get
+fixed any time soon. In any case it's reported upstream at,
+
+  https://github.com/linbox-team/fflas-ffpack/issues/393
+
+Bug: https://bugs.gentoo.org/924880
+---
+ tests/Makefile.am | 1 -
+ 1 file changed, 1 deletion(-)
+
+diff --git a/tests/Makefile.am b/tests/Makefile.am
+index cd73818..2941182 100755
+--- a/tests/Makefile.am
++++ b/tests/Makefile.am
+@@ -57,7 +57,6 @@ BASIC_TESTS =               \
+ 		test-quasisep       \
+ 		test-pluq-check     \
+ 		test-fsyrk          \
+-		test-fsyr2k          \
+ 		test-fsytrf          \
+ 		test-invert-check   \
+ 		test-rankprofiles   \
+-- 
+2.43.0
+
diff --git a/sci-libs/onnx/Manifest b/sci-libs/onnx/Manifest
index a82149e287d4..731c22139c3f 100644
--- a/sci-libs/onnx/Manifest
+++ b/sci-libs/onnx/Manifest
@@ -1,6 +1,7 @@
 AUX onnx-1.14.0-cxx_14.patch 390 BLAKE2B adae69890eec31f16de501ef3b2fc88e5dff2d0fb561d470955daa6830e7a818d35c80789cbbedd874e11776a59f07fafe9576ee11e6a0fb45fc8635fb6ef81f SHA512 7a89e24067909b1106753bd2853fc51da3d8a567c452d72d53ea321c13c78c46dbca356e3fbe78d98e301a360b93090644861c3a0d8ab6022f9666c0ee788be1
+AUX onnx-1.14.1-musl.patch 518 BLAKE2B 540d5c81d43a515ca6c4598057b80ad2157ba528dd976306175ff68e9fb0e8d05d1a92a2d6c706470017750f86ae48f30c91ae21e44627679e7b3ec8cf6e1a43 SHA512 6e198ee14da82c0fe0512d587de5da0831fbc40ac546407dc27b2ed5c75e9aa87bb0d732c6ebd6099f26ac926ad7afaed131a914352e58f9956697ab55cbf933
 DIST onnx-1.14.1.tar.gz 11570627 BLAKE2B df478219b5d557ad7e0717377996eefc02baa88a89d9681b17e00670e42fa3c8e47db0f5c5fdfab682fa7d80032559da8276c5106a91a7599d190427e2b6e4a8 SHA512 f846fffb286c4aeadc01462f220515f0a5c2ce1cbec849da7092a08c2676f8308af7315318a2866e9182f9aed719984ef95a9ddc69ffe0e62e40664395df5efd
 DIST onnx-1.15.0.tar.gz 12360484 BLAKE2B 4d35b82c128a69124b9bfcb3e56b3d584b7451ae739a91039e201dd485efa3e90e34e6cf135993317622f8f524160a38556231b2b0561e93d8cd0487abf35c1b SHA512 b46a4ab70af88053318eba45251c1f71528f15e45a33042877570e8d857febd3ec66e2e811fcda2105a4f17b84c9a1c6a0aaa22756c3287321b3ea29e83127fd
-EBUILD onnx-1.14.1-r2.ebuild 1255 BLAKE2B e06cad5c07832f9f55093fdae68e8ce89f8fc7b7f42c7c8db5050d62dbf282adfc5d5d75341f83dca083e0d7596c23cc803ea38aa1649737c83ef64b09ef0d10 SHA512 3d73503985b97be661162b2ae0c7d6cb2bb4458b9419ddc6eaed1696a8811f8352837b6bd065099c8496b6fcbb8082f5d88a6a6a92049ab25cec9b5da442e407
+EBUILD onnx-1.14.1-r2.ebuild 1287 BLAKE2B 981384a06007a6e1d0bbe602a6ab46cf856a5f6c07223599fbebfd23f2dfef4ded766367580b11e635421b0fb94ca0574fde853ee6dadb4d5f50e978a1eec1b9 SHA512 98cd76cee92bebe93192cce202fd7caf4cbb42d0afcf312acbdcb57992ccc1a7efe1f9cc3d1dc9df9cdc657b5c1ae4bfb2d6e5f86624f4bb6b5853d6a19ec952
 EBUILD onnx-1.15.0.ebuild 1202 BLAKE2B b02f87b6f3765cc308be2f150cd528fd9840a5cbeb7b786db9583d4b9282707b374c4b1c360ce5944a0c0f5ce838416114659188b38913dedceaf2bdd38ea4ec SHA512 64153c948cf18055fa4bb9196e6a384f727281d32e2827039fa60236348d4c630d7525a9bab61e1d092c795142beb811db4263bff5f6eba13af5afb69a22804b
 MISC metadata.xml 322 BLAKE2B a78b6feffba2cf354154448a0e0cef5e866ec51ff0158939e7a5be1f3c4cb9bb3b29ae88ae06540627946fc3e0f6e9a63ef4d8951385e840a7a87ada99e1d50a SHA512 9d81e8e43822232c8c8cf690b6bdb9939f04adeb9230f8225a5b0b10083f9555304768901c46cc5d29c41038397bbb3b12e0111c3d0443f4c0003e99b99fc50f
diff --git a/sci-libs/onnx/files/onnx-1.14.1-musl.patch b/sci-libs/onnx/files/onnx-1.14.1-musl.patch
new file mode 100644
index 000000000000..04748ed67e6a
--- /dev/null
+++ b/sci-libs/onnx/files/onnx-1.14.1-musl.patch
@@ -0,0 +1,11 @@
+--- a/onnx/checker.cc	2024-02-18 15:30:03.316320035 +0100
++++ b/onnx/checker.cc	2024-02-18 15:31:05.715473732 +0100
+@@ -184,7 +184,7 @@
+         }
+         std::string data_path = path_join(ctx.get_model_dir(), relative_path);
+         // use stat64 to check whether the file exists
+-#if defined(__APPLE__) || defined(__wasm__)
++#if defined(__APPLE__) || defined(__wasm__) || !defined(__GLIBC__)
+         struct stat buffer; // APPLE does not have stat64
+         if (stat((data_path).c_str(), &buffer) != 0) {
+ #else
diff --git a/sci-libs/onnx/onnx-1.14.1-r2.ebuild b/sci-libs/onnx/onnx-1.14.1-r2.ebuild
index 9a6ffb11f82d..e6ecbfd239bc 100644
--- a/sci-libs/onnx/onnx-1.14.1-r2.ebuild
+++ b/sci-libs/onnx/onnx-1.14.1-r2.ebuild
@@ -34,7 +34,10 @@ BDEPEND="python? (
 	${DISTUTILS_DEPS}
 )"
 
-PATCHES=( "${FILESDIR}"/${PN}-1.14.0-cxx_14.patch )
+PATCHES=(
+	"${FILESDIR}"/${PN}-1.14.0-cxx_14.patch
+	"${FILESDIR}"/${P}-musl.patch
+)
 
 src_prepare() {
 	cmake_src_prepare