gentoo auto-resync : 18:10:2024 - 04:04:23

5 files changed, 6 insertions, 53 deletions

diff --git a/sci-libs/Manifest.gz b/sci-libs/Manifest.gz
index 8742010b6f12..f4e96c696790 100644
--- a/sci-libs/Manifest.gz
+++ b/sci-libs/Manifest.gz
diff --git a/sci-libs/libcifpp/Manifest b/sci-libs/libcifpp/Manifest
index 091189eaa03f..2f71f5ff3f7a 100644
--- a/sci-libs/libcifpp/Manifest
+++ b/sci-libs/libcifpp/Manifest
@@ -1,10 +1,7 @@
-DIST libcifpp-5.2.2-components.cif.xz 60754468 BLAKE2B 899120c2d6749fb2da9be94de8665f4e961d08c101b33bce98b84bf126b32d43bb79c88da98fb926047522a6f138512dcc59df698f57a83b716e039d422308d4 SHA512 d861b83f8b363f2e64ccf073bae768d73f9f57ec2674bf30d43b05fc9a32d235e26c888faaa02b6276e0734632b237b6dd00d8b966dd63b4fcf6562ebcf41cfc
-DIST libcifpp-5.2.2.tar.gz 2277238 BLAKE2B a31af09bed7f1dbd6f610e104f0a8439742c863bc58b3680c058cb570a1f93fbcd6d23f29a372aafbb7166a4d86b2590cd24e092b1cc7af25bd09bbe437c93eb SHA512 2bbe9b13fd0ce8f686b5fa9e1675a41cc37c954cd9d80326fcc7c5f4c767be95dd71f6ddc3e841b6102214cd66205303515fa0750683e539f48b038a32a51af9
-DIST libcifpp-7.0.4-components.cif.xz 62591092 BLAKE2B f5fc502cfb0d5c33c2218a02ccbf652c87f0d9d0ac93a8f2eb7c5a7e1e301555cb641f3df815fefbb998ca00f0b04f4fd39de2023dd69ca88de29a814208cd70 SHA512 6f85b84b9e4c63b134dedbc41a6a3ba4a7bec6a66b0ce1fcc9248c06b3e5600b8fe31c5ed72722cb40cb431227f17bb9f485e7b471c84efa313b04adfb161ec2
-DIST libcifpp-7.0.4.tar.gz 2598838 BLAKE2B db6e4b1573d243c511f15ea1fc28867c8a57eb1050c24a59c12a4608b59890ee567569ca4035daead7e74d206a77bb280c56d54ef8b050fe297ccd75cf48ffeb SHA512 6957b3e3ace855c22923391cfd05db40399b6b84fb194ccceaf7b460493ee8576573056296eb06fecf9e6e83c590776fdd5a09f06bb316de61f44468d2a53392
-DIST libcifpp-7.0.5-components.cif.xz 65274864 BLAKE2B e39ff3d84c8a6977eb505dd68f729261e9caea58b254dc547ddc375a6e9501903aca3886b1ab31f7843251bb430f8b7ed2b27735eae60152e5b54149ec1c0f1a SHA512 f6320df7b839f10282d7c86c865597f201ea3a75c9c95cc69b1526062bb0b57bd37562545560aad2c5549937069ff3ea3e580466aaca8a8af1c736a34554ba98
-DIST libcifpp-7.0.5.tar.gz 2648187 BLAKE2B 700cc68efb355a8e32a81b4ad9acbac0ad31760935ff664663a96e82c6ca74307f43a3c4ea378362c7fdb97deb73bb81021e9da3dd1b528d6eae98dec0a6e4aa SHA512 be4600dfaeb7211728d98caa283904407d0314aca52e63038a218b12d88ef331ad8de2a00d0e610781fa6dce5328d602e65fec9c40d4dd132b6aaed9dd0acf2b
-EBUILD libcifpp-5.2.2.ebuild 893 BLAKE2B c581661af0f35cf4593654dbd915e9eb31fa464790be260faec7924104a341922a95e209415af57462d72f27867b9124af84865a82261cda04231ea37b0b47e2 SHA512 dac5c593845e0274ea86e88805cbe240096529ceb977fafa941d11de6c03618ea8c63eabbe01d6dfdbdf03325de03f380b8d8ad610221516bd48c29fe1de58a7
-EBUILD libcifpp-7.0.4.ebuild 1055 BLAKE2B 68150419ce2e7e5ab7b976715e622c01a220ba24e0b846c2102c3c9629590f75f6509c36a5565141e9b29d9c014c23ae3ba9a30429ce165936853071840ba4bf SHA512 206748d242530272a826045e09d96341498511bb90ffd1664454211ac38f8496a2cb0eab8170440a494a7fd4f7e72f324ccfe701ca88a0c43e2cfa9622f17f84
-EBUILD libcifpp-7.0.5.ebuild 916 BLAKE2B 70ab740e5a42b03a7d736d67aa0e72815cdf5adfde93bc3aa794cd73adeaf54cdf63d95797812a3b805c79c1b3a58670a2cb4c5b70b920ef54aa5d19745d6f63 SHA512 08fb4784be4887437753ea3debf5b999f69f147e40b89892bd6396be3680bfd5b04d9d44133a896802338e5a1bc4e3c95500f3ab4a5f5e629c87391c07e1a290
+DIST libcifpp-7.0.6-components.cif.xz 65615784 BLAKE2B 680aa4e10e8297541f7c8f4eda5ed29bfbbbe0f91495b0cdb0f0796b3b800ab7a7ea97078f011d248e550c5fb5b3a5359dbddd70475a50e770f2aa1f1c8a4751 SHA512 4b992ae9f8a8acb5d15742899178e69b668380d67dfad1f320a2ca0c9e2f813d4877a9eb37729372265403b3b6c8d3a302b81b8a5d4087444a722b182495e432
+DIST libcifpp-7.0.6.tar.gz 2648194 BLAKE2B 569a0357b77a7b86686e49e5b117e926147ec93cf16671a3869d8d355e4fdbdc1144bbffb7be8ac29ac4299b9ca3860ca2bdbcf1cf5f6ed3f83eadf00beb5e3d SHA512 e0a599928d6126321a3b2af99943bb627369f10c97bf5eacfa314e245dcf3c195a46d34e7b30600e2d4ae94a87567e7d86fb8178eca75dad2a38d5fbd5b4dbc1
+DIST libcifpp-7.0.7-components.cif.xz 65615784 BLAKE2B 680aa4e10e8297541f7c8f4eda5ed29bfbbbe0f91495b0cdb0f0796b3b800ab7a7ea97078f011d248e550c5fb5b3a5359dbddd70475a50e770f2aa1f1c8a4751 SHA512 4b992ae9f8a8acb5d15742899178e69b668380d67dfad1f320a2ca0c9e2f813d4877a9eb37729372265403b3b6c8d3a302b81b8a5d4087444a722b182495e432
+DIST libcifpp-7.0.7.tar.gz 2648232 BLAKE2B 559c62110dd700262bc403a7fac2d4e65a29a86a84313823796cf1b99c5e37ccfd453c113db5509bf5c2cadc0bcfc0e1267a9ff4863d165e984beeb20fd927d5 SHA512 a3f4bb8218b8136b17a440a4e1ad3b8c2674bbb37084e60ad743b41b3d7d7f765c51495adb1789e63624d889cf43e3a001e1a2dd2c5d38d3268b680a77510120
+EBUILD libcifpp-7.0.6.ebuild 916 BLAKE2B 70ab740e5a42b03a7d736d67aa0e72815cdf5adfde93bc3aa794cd73adeaf54cdf63d95797812a3b805c79c1b3a58670a2cb4c5b70b920ef54aa5d19745d6f63 SHA512 08fb4784be4887437753ea3debf5b999f69f147e40b89892bd6396be3680bfd5b04d9d44133a896802338e5a1bc4e3c95500f3ab4a5f5e629c87391c07e1a290
+EBUILD libcifpp-7.0.7.ebuild 916 BLAKE2B 70ab740e5a42b03a7d736d67aa0e72815cdf5adfde93bc3aa794cd73adeaf54cdf63d95797812a3b805c79c1b3a58670a2cb4c5b70b920ef54aa5d19745d6f63 SHA512 08fb4784be4887437753ea3debf5b999f69f147e40b89892bd6396be3680bfd5b04d9d44133a896802338e5a1bc4e3c95500f3ab4a5f5e629c87391c07e1a290
 MISC metadata.xml 299 BLAKE2B 88091a7fbc350db0c22800bcd0de80ec406f7b8a0187b29d8660978384179f8194f7aa794bf0bd3b3f4ab68ac662ca62479319e218d2622e2a3e470653848251 SHA512 e6bc610ae1cf40584ba3067ece0c0c85d08ad0bbb99f5ecd8281c41b04ff932db838926a6ff238794ff46eb8035eb57c750e088bd3f164180952a9e597544e14
diff --git a/sci-libs/libcifpp/libcifpp-5.2.2.ebuild b/sci-libs/libcifpp/libcifpp-5.2.2.ebuild
deleted file mode 100644
index 0a794df24722..000000000000
--- a/sci-libs/libcifpp/libcifpp-5.2.2.ebuild
+++ /dev/null
@@ -1,38 +0,0 @@
-# Copyright 1999-2023 Gentoo Authors
-# Distributed under the terms of the GNU General Public License v2
-
-EAPI=8
-inherit cmake
-
-DESCRIPTION="Code to work with mmCIF and PDB files"
-HOMEPAGE="https://github.com/PDB-REDO/libcifpp"
-# Update components file on every bump
-# https://files.wwpdb.org/pub/pdb/data/monomers/components.cif.gz
-SRC_URI="
-	https://github.com/PDB-REDO/${PN}/archive/refs/tags/v${PV}.tar.gz -> ${P}.tar.gz
-	https://dev.gentoo.org/~pacho/${PN}/${P}-components.cif.xz
-"
-
-LICENSE="BSD-2"
-SLOT="0"
-KEYWORDS="~amd64 ~x86"
-IUSE="test"
-RESTRICT="!test? ( test )"
-
-DEPEND="
-	dev-cpp/eigen:3
-	dev-libs/boost:=
-"
-RDEPEND="${DEPEND}"
-
-src_configure() {
-	cp "${WORKDIR}"/${P}-components.cif data/components.cif || die
-
-	local mycmakeargs=(
-		-DBUILD_SHARED_LIBS=ON
-		-DCIFPP_DOWNLOAD_CCD=OFF
-		-DCIFPP_INSTALL_UPDATE_SCRIPT=OFF
-		-DBUILD_TESTING="$(usex test)"
-	)
-	cmake_src_configure
-}
diff --git a/sci-libs/libcifpp/libcifpp-7.0.5.ebuild b/sci-libs/libcifpp/libcifpp-7.0.6.ebuild
index 855615bcc0ce..855615bcc0ce 100644
--- a/sci-libs/libcifpp/libcifpp-7.0.5.ebuild
+++ b/sci-libs/libcifpp/libcifpp-7.0.6.ebuild
diff --git a/sci-libs/libcifpp/libcifpp-7.0.4.ebuild b/sci-libs/libcifpp/libcifpp-7.0.7.ebuild
index 8c10d84a2291..855615bcc0ce 100644
--- a/sci-libs/libcifpp/libcifpp-7.0.4.ebuild
+++ b/sci-libs/libcifpp/libcifpp-7.0.7.ebuild
@@ -27,12 +27,6 @@ DEPEND="
 "
 RDEPEND="${DEPEND}"
 
-src_prepare() {
-	# https://github.com/PDB-REDO/libcifpp/issues/59
-	sed -i -e '/unit-3d/d' test/CMakeLists.txt || die
-	cmake_src_prepare
-}
-
 src_configure() {
 	cp "${WORKDIR}"/${P}-components.cif rsrc/components.cif || die