gentoo auto-resync : 14:04:2023 - 05:44:49

7 files changed, 54 insertions, 2 deletions

diff --git a/sci-libs/Manifest.gz b/sci-libs/Manifest.gz
index ba78d108ec77..9a2982e80dc9 100644
--- a/sci-libs/Manifest.gz
+++ b/sci-libs/Manifest.gz
diff --git a/sci-libs/hdf5/Manifest b/sci-libs/hdf5/Manifest
index 0ce519a7ef07..0ea9c8d4c6ac 100644
--- a/sci-libs/hdf5/Manifest
+++ b/sci-libs/hdf5/Manifest
@@ -1,3 +1,4 @@
+AUX hdf5-1.12.2-configure-clang16.patch 1239 BLAKE2B 76641263e8cdf1f694a0b23c9787e9c1a0e86e30079507beb25caf2c1b89a2e431f7456321e89a39a6ec1d06c5a51a941f9ae5c85a7e3e24462c0eabd41911e3 SHA512 b664f6e464ec824bad46a8e58b571a46b10bcdcc8eae39b878d239b169685b2d1bba6c0ce295f8a690b94f016731176f500b568ef9f0cd2fe0df290ffb6dc298
 AUX hdf5-1.12.2-no-messing-ldpath.patch 1086 BLAKE2B 77aba02cd8f3663883fa5cf91b3f77067163f58ec4270d22e2c4e1a5b9b1cc138a2e9dd1c7a44331165c69d6c7a0427fe2708bae63958b416a9f26c799de7443 SHA512 8b8aa080cb6feded376900cf9f4b1f1bbe98550b37e9ae8ad660419f732e686aae2ff6eac37e7810ee438a0e9c1b7a37d24f5db8590cce0c91f482ec7b873527
 AUX hdf5-1.12.2-no-strip-symbols.patch 434 BLAKE2B c8d96cb95d3444c18349d72b7fd59f76b4af3d0c5422a7c31161b8f98afacb322b042b8f5751b581565b351148fd0f4003379349b6ca964f5957cd9e19ebdebc SHA512 6b593a8bbbd4a4e9b97e8b3324ad90024b2c09c669d2f6e21a0d23adb66bbbec34afc5961bf97bc6f913492e33610a4b5aeca6a7a4ef9f7605ce5b69fbba6527
 AUX hdf5-1.8.13-no-messing-ldpath.patch 1141 BLAKE2B d7d186e4c00acb9fd3d44beb1d8c3c4da0c373f88b3fdf21e1f89b169b747d49572239385228687cfc10380bdceb9ca6d1ac0d5f5154cb7a328f8a2d509fb28d SHA512 e43021ceb83909ab06ba378363c192aa0f1b34cc7c2b121f5000e215516dbdea1b825a53ac4023073bf4870a5c3452c22f5535391d95af45ad63a309e1ffa5a4
@@ -7,5 +8,5 @@ DIST hdf5-1.10.5.tar.bz2 8706317 BLAKE2B ac326be8fe4ccc4b0153f15bc7d65aa8f1adc2a
 DIST hdf5-1.12.2.tar.bz2 10494264 BLAKE2B 99ca5b57f6f54fa044c909f0773de62b218c1f0ec3c011f88f3c227536dd719e77ddbe42d562b1214e8843e41d8fc56db499d7f122876fdd36ef31b235229cb7 SHA512 cbb4663570de76b11adb6bf62cfdb754371d31eeab04691479a5764a45207a9c1309665ab80f51c63a4b9b87354f9cbe6835cef506a9fd554d142c6d2bec21e5
 EBUILD hdf5-1.10.5-r1.ebuild 2940 BLAKE2B 45e4cf6004cb70667829844ddf37f2c4f96d6b5c92a8eb9b3c757ea47e6d9f98e28f906c7d2c6a33efd95328bc0b6358d640da36c82fc5408bbb968c38b95115 SHA512 04ac047f56128f41f4cdc8b07caa0d656f31d34200961a1ee525583263dc338abff7860158f9549ddf31bf0563ed963fbd5dff4ee212d85443aff599e5d2c25a
 EBUILD hdf5-1.12.2-r4.ebuild 3209 BLAKE2B eb7b30bee62cbad778b07f089026395d70046e3845b636bdb526e0960e4ae3789f2e5d1c9eac6fc213b755809c42946cf332446582d032d04900cfd80b57b06a SHA512 e6c2c24f9558c381b8ae5da8f0967635c64b02ad5f8288d5a08841c7637f8de7b72229f89d8be2cff5cd0c8c4482b404db3a7d41aeeaa927157c257f91fb62a3
-EBUILD hdf5-1.12.2-r5.ebuild 3289 BLAKE2B e005475b0d746974ce117f5d590365931560aaa7e76b9c674716fef0b63a982a24116aaf4d29cb0d1a83d7cf5651b55b2531e42587af92b50fde50caf63f1616 SHA512 3bdf59a729c560da5896b3c486306579aa1822b066cb5ffaa635a5e3b3934d76e96a2af5afbb9752de623389d78a5c10df19c050922bd82a7c20605bd8a2dae9
+EBUILD hdf5-1.12.2-r6.ebuild 3341 BLAKE2B c574efa933f240fae23049007c320138ea43354ddd78194d74e6b27f630a6ad0fa2a1bc083b563006eb7dd7e36ee00a77a6f684ad42bee383372a79750726d9a SHA512 0385774ab2be1abeec7467886f8900b514d8c1410c531dac7753570cb9e47d35750cd8ddfe92a0df524ecae8889602cc27caa15a52d8e94aa10455e50cf18df3
 MISC metadata.xml 826 BLAKE2B fd131bb207e4ab863ef7c05ab95e5c0254fa08230139a2508ab5f0c363809b0735532498ad26cc39621495a063de86ab5bd97447514ff561a63302e8b1d7d26d SHA512 290883ed9bf3de60bf04e2474c4db50e095b1b87974867e58601a5c5c2f98d6b839ed22d9ce2798bc44f484f1a38ee4b6df99aaea7d134629bd441d34b5a29b5
diff --git a/sci-libs/hdf5/files/hdf5-1.12.2-configure-clang16.patch b/sci-libs/hdf5/files/hdf5-1.12.2-configure-clang16.patch
new file mode 100644
index 000000000000..f341fa99ddac
--- /dev/null
+++ b/sci-libs/hdf5/files/hdf5-1.12.2-configure-clang16.patch
@@ -0,0 +1,30 @@
+https://github.com/HDFGroup/hdf5/commit/9dd36f016a4316b94f5df15856d228de01d304c6
+
+From 9dd36f016a4316b94f5df15856d228de01d304c6 Mon Sep 17 00:00:00 2001
+From: Ryan Schmidt <ryandesign@macports.org>
+Date: Thu, 17 Nov 2022 16:28:44 -0600
+Subject: [PATCH] Simplify & fix check for szlib encoder (#2263)
+
+Return the result rather than setting the exit code. "return" is a
+language keyword whereas "exit" is a function for which the <stdlib.h>
+header has to be included which it wasn't in this test, therefore the
+test would previously fail to identify that the encoder was enabled if
+"-Werror=implicit-function-declaration" was used, which it is by default
+with clang from Xcode 12 and later.
+
+Fixes #2262
+--- a/configure.ac
++++ b/configure.ac
+@@ -1737,10 +1737,7 @@ if test "x$HAVE_SZLIB" = "xyes" -a "x$HAVE_SZLIB_H" = "xyes"; then
+                 #include "szlib.h"
+             ],[[
+                 /* SZ_encoder_enabled returns 1 if encoder is present */
+-                if(SZ_encoder_enabled() == 1)
+-                    exit(0);
+-                else
+-                    exit(1);
++                return SZ_encoder_enabled() != 1;
+             ]])]
+         , [hdf5_cv_szlib_can_encode=yes], [hdf5_cv_szlib_can_encode=no],)]
+    )
+
diff --git a/sci-libs/hdf5/hdf5-1.12.2-r5.ebuild b/sci-libs/hdf5/hdf5-1.12.2-r6.ebuild
index c27c86b3a6eb..c723c3ad3dde 100644
--- a/sci-libs/hdf5/hdf5-1.12.2-r5.ebuild
+++ b/sci-libs/hdf5/hdf5-1.12.2-r6.ebuild
@@ -38,6 +38,7 @@ PATCHES=(
 	"${FILESDIR}"/${PN}-1.8.9-static_libgfortran.patch
 	"${FILESDIR}"/${PN}-1.12.2-no-messing-ldpath.patch
 	"${FILESDIR}"/${PN}-1.12.2-no-strip-symbols.patch
+	"${FILESDIR}"/${PN}-1.12.2-configure-clang16.patch
 )
 
 pkg_setup() {
diff --git a/sci-libs/plplot/Manifest b/sci-libs/plplot/Manifest
index a80360fb4762..b362ec13a151 100644
--- a/sci-libs/plplot/Manifest
+++ b/sci-libs/plplot/Manifest
@@ -1,10 +1,11 @@
 AUX plplot-5.12.0-safe-string.patch 791 BLAKE2B 8a3b37dd236d3086fe0780dd0e10d670884f706b4e6164980d8197de1a3f49fc0ef2ee15cd9f499c50b14a454bf62a6d6aee1512522ab5a3fe16c8fb93fc042f SHA512 c531a57ef2203c01f5d44f0bd1edc5101c740986987e454019fe42f4905dbd9b5f13ad93e91e3c73c95c320e9128ac4696021e258dc523fc9f5559348eda9129
 AUX plplot-5.15.0-QPainterPath-include.patch 190 BLAKE2B 097e21f0a5a8c5d941f95f089529762d080fb18880f607b00e8c0a33ebb37ef2efa1be025274a2d7ad1cca5590f060560c7679424cb5f2c572de919f9a168ea8 SHA512 52d656294fe75ebf28102575e191a4e43f0cba0b1d39826bb3eabd3044d83c00dd1a774d3df3de4eea6fba7af8138842352f76218cb9fdceb444be487c9f14f6
+AUX plplot-5.15.0-configure-clang16.patch 512 BLAKE2B 44dc699eaec802f143c0659736b9f87d7430b3a13f672549c6b55da62c4b3eb117efdc6132386589bcb2c889a4c3544ec92479db5aff764e61284b327047f4d4 SHA512 5fdec8150d3ee50ab086b0c49ef0ae754fe0c2129444b1bc435b7f3b64c04195b83bceb3ae8cedc92d1231c50f1322cd035a6f5c516e5386b0dd486808b5bf3a
 AUX plplot-5.15.0-ieee.patch 1243 BLAKE2B 291274ae674f3471fdf081619c2b8e14caec490b391413e52bc8b424f596757297b48b9af09647196adc3069f81750652d05d8da5582092ad13e92d56af05c01 SHA512 e242ff53ac490f17b898cf8184446a342bd9ca36f6245f4142cefe275aa2f5865e13428cdbc8663e80a56d7f0c438492b3529dd7c3dd0400d380d99928c58318
 AUX plplot-5.15.0-multiarch.patch 2544 BLAKE2B 288fc0f26f1f30cdbb786642ca5a59d8ba29958ffa690f87622748d4fa47ba098bce6671988e55f59526113dba08370ef15b0bc516552a9dee6918f430444dd5 SHA512 f98ea4f09cfaff7b1b2ad78940a10c5368ad29f402daca34a9a1ee2eeb3b275137576db884f1304ddc4c48ca83c032b9b2b10132a850839fba9c176bb27255a7
 AUX plplot-5.15.0-ocaml-rpath.patch 9583 BLAKE2B b475580f9e4da0ab660dc2d0dfbdbbfbd277787a12421cf24c31453952257111c06e790a7f728f9b97ef16a8c4ea5a5e856e852f54cd81445a1f5b2aadb9df9d SHA512 5262e9922829ee3ec223b60b794de728e15104ba176f1a1e2fe4ba14929b08943cc5f00d166441c0e8ed5dfb09902044e3c62d944efdcf4bc3be604a56cb424a
 AUX plplot-5.15.0-ocaml.patch 3424 BLAKE2B ba1c9f758c319a76b0a457a287ee6934ee39300401e2d9a364c70446e12af679ce55c22eda0bf7aa7cb621fd4c76f56268afa649ba935a716495049f41706187 SHA512 1387625d1e784fb92ab3279a342c08d8f85fc055e0c69ce1af9656492102072c7a1d5a6498f8758dc3fd35e0543e80b65cd315641886f9baff60f7740583a0e3
 AUX plplot-5.9.6-python.patch 379 BLAKE2B cf08250c851c3405517183e8f3425f42ede2f850cc8bcd89828e3e1b89035731a8a3face0988750e9f9e5dce2fa0404b23b2721c5b315ff61aeac552fd6e05f2 SHA512 cb2022bda3d5408ef0b2dc280981ad8bdb2f7ecb20d827f7e71ce063fba60963e68aeaa5efd8eef87da8e3dc270b609f7cb342c1da175cd757c9f135173842e4
 DIST plplot-5.15.0.tar.gz 15380293 BLAKE2B 41f359c4e86c7a26fe53a9d82a9f02aeb97b5b6f44abca590621640c56e50a62823e8a03165a939689f5456cee419b8292ea34faccd07641bd4a953b6f1d73fe SHA512 54533245569b724a7ef90392cc6e9ae65873e6cbab923df0f841c8b43def5e4307690894c7681802209bd3c8df97f54285310a706428f79b3340cce3207087c8
-EBUILD plplot-5.15.0-r104.ebuild 7483 BLAKE2B cb291f65bace22adaa562ed9a6a5cb8573500e45123a998dc8bc26d82eb8d7456d75dd8fa919fd4e9cbf9b36113aa2c574c84b747af486c4beeee9531869b88e SHA512 1b2928aedb7f2a424715c22694ccc035429a619529be2245eacfbdfefa0f46fd55f8c856b555dac0d51ad65de51f3d4ad7c1081f537b87de56937c3fecea9efc
+EBUILD plplot-5.15.0-r105.ebuild 7535 BLAKE2B 29ccd7f575ef133daa1b2dbe42131ae987de260ba8bc306f03a8aac0c39620094a6de84cd3804aca210eff5f46cab095060e4f1cd0a6b960fe54b8e59aa582a8 SHA512 8cb5d231dad4cf5f02ef3db2b22234a44ab5be71236fa459d9e18e34f538db444274bcaee097ed8d93cf2aca7045e045ae9023c8067b37fffe621bdc589dae2a
 MISC metadata.xml 1421 BLAKE2B a15479caf11e0f90cb45613ee48ca2d4270a18b57b8f409d4687cee5c55f660fca46a8a2a36c3c1c4a5d02a4c964b1d8db6ea4112039af8bcda808e50b4bf1f1 SHA512 fc99a3225ce54af9945e8fec3cd96f9c75cdc74b8ad4d5362bd5b1529b3872eddd06a190ea9f1cafa727d28e3e2086a27ecd5db89afd993d844ba8f299f2f317
diff --git a/sci-libs/plplot/files/plplot-5.15.0-configure-clang16.patch b/sci-libs/plplot/files/plplot-5.15.0-configure-clang16.patch
new file mode 100644
index 000000000000..1f72da24ffb0
--- /dev/null
+++ b/sci-libs/plplot/files/plplot-5.15.0-configure-clang16.patch
@@ -0,0 +1,18 @@
+https://bugs.gentoo.org/898258
+https://sourceforge.net/p/plplot/patches/37/
+
+Avoid implicitly declaring exit.  Future compilers will not support
+implicit function declarations, so this cmake probe will always fail.
+
+--- a/cmake/modules/TestForHighBitCharacters.c
++++ b/cmake/modules/TestForHighBitCharacters.c
+@@ -17,6 +17,6 @@ int
+    int i;
+    for (i = 0; i < 256; i++)
+      if (XOR (islower (i), ISLOWER (i)) || toupper (i) != TOUPPER (i))
+-       exit(1);
+-   exit (0);
++       return 1;
++   return 0;
+ }
+
diff --git a/sci-libs/plplot/plplot-5.15.0-r104.ebuild b/sci-libs/plplot/plplot-5.15.0-r105.ebuild
index a36423a145f2..0f4ce8cab531 100644
--- a/sci-libs/plplot/plplot-5.15.0-r104.ebuild
+++ b/sci-libs/plplot/plplot-5.15.0-r105.ebuild
@@ -113,6 +113,7 @@ PATCHES=(
 	"${FILESDIR}"/${PN}-5.15.0-ocaml.patch
 	"${FILESDIR}"/${PN}-5.12.0-safe-string.patch
 	"${FILESDIR}"/${PN}-5.15.0-QPainterPath-include.patch
+	"${FILESDIR}"/${PN}-5.15.0-configure-clang16.patch
 )
 
 pkg_setup() {