gentoo resync : 20.02.2019

18 files changed, 816 insertions, 16 deletions

diff --git a/sci-libs/Manifest.gz b/sci-libs/Manifest.gz
index 6f06109298d1..1f7621eb9c66 100644
--- a/sci-libs/Manifest.gz
+++ b/sci-libs/Manifest.gz
diff --git a/sci-libs/flann/Manifest b/sci-libs/flann/Manifest
index 7dd51a2b51a2..663fad96d6a5 100644
--- a/sci-libs/flann/Manifest
+++ b/sci-libs/flann/Manifest
@@ -1,6 +1,8 @@
 AUX flann-1.9.1-cmake-3.11.patch 2998 BLAKE2B 85c6b6feb800ab1a21af86a4001b0056fda416a6b61147f614670968cca13fa2b63d06673a11a2ef72b6f0d0876539ccb68134f4817975d4b796b66a716e606d SHA512 5cdffa2da3538965c0d20fb091a13124cdc301669b622ca35a131680db8abb58cf8e02f1366604a19a5cd10dd67f14861caa1c12da3154d82d576cb8052a4b87
+AUX flann-1.9.1-cuda-9.patch 850 BLAKE2B f193a6fd25a1d2cd45201d547fb444393cb82f344da6f5d1e2a012599170a412b261f6cf35d8943da7e96fd9f204991580d5ea045b43e2aa33ea5ad9fa9307d4 SHA512 0b5cad7b928319b922bdaa27d07fd38f1c359799ef9c217b6c1979f8ac9a86706e7ad1547f484aeb1db449a37693d18b2710b877483266915a869372c29ee1e4
 DIST flann-1.9.1.tar.gz 485391 BLAKE2B bf1e1e7feb33e939e1d0586db593bea3fdf66726fbadec63df9ed9c7bdb678babb11001769f0d041a7a569186b3d700db8b96af5eb9740615f6dfd880460f68b SHA512 0da78bb14111013318160dd3dee1f93eb6ed077b18439fd6496017b62a8a6070cc859cfb3e08dad4c614e48d9dc1da5f7c4a21726ee45896d360506da074a6f7
 EBUILD flann-1.9.1-r1.ebuild 2242 BLAKE2B c36832b645ca46e3aa622882cca34b644d8b667def8b900f1e5eea83fa0d55677f65c14c4a17134f080b4b7fe863023a71a7aeac72385bc25a9c2a4048fb33bb SHA512 08de8ba5d423999f8403104be8efbd678e6c4981790a314e717944d6f5ca714cf97219efa445894145acc47d896ce11a49867e19c654b6c403db3b55700b5ab0
+EBUILD flann-1.9.1-r2.ebuild 2306 BLAKE2B 2913821eb87a06cd7dd14bfe8562ab72496043977fd6a7a909f9c3899a65532539bce43a1298547cbefc766b4f27f00d4c27ade5dbfd1467928765ca2cc96d54 SHA512 9a94f340a95e5a2c68adba8a278211b7a655c0753cc52edc9b92ffd65629a4ac8cdb8197ddde31ec88ed6908abcb9019b77447a1e12983c0b63f1c6a47313315
 EBUILD flann-1.9.1.ebuild 2183 BLAKE2B 8de25772b012bbbe70e13db8876688ee283d1dada1978bb9c982d1f1bc26f3daea9adaf7f12663d1a0590c03730e6da604f10bfa356a8728262681c7173af13a SHA512 7f5ff08c1fe83379577043d01b2c7cda91b4a44237cd65aa1e2cb36e10331238efdc40a9d1698b41d3ff493ac50cfa61cfc5ccae33d5cb9a03e47a94458dd05c
-EBUILD flann-9999.ebuild 2178 BLAKE2B de6de98ab61428b3f19b8b229b5ad947a3e73478f21c45900b0752bcf6e382317d59020618d876e8a3908f2ae9ae770ef204959fff5f3f8bdd0d67825fb62256 SHA512 0ff48c8f14166bf2a4a77ec562618156b7ec7a40282ea0f61d233ff79a9fb3bb84195ac0465dd7b9dde7fc25889dae11a3f0088a0db3a51de00cb9627343d6bd
+EBUILD flann-9999.ebuild 2215 BLAKE2B bb8f804a838a8c6b1702666a92cca7ce919523b7c8590a6f816ae3ec2d8b85c44ecc237f55bd498c8e6e296388c7b1cfcb6338b7a2361a5eaef869f2987b85f4 SHA512 9d2c22c2e45bc73cd982a7d75f77ec05b0533a60dc1125cd5127aec43d74f990b81690a1e47fd67cabc2ed5da500dded79c4dd8c79dc138db6c2a36d10bac0a0
 MISC metadata.xml 971 BLAKE2B 5cffd393d18c3719d8b61069dbc84f4ce4e16e6746637b1203dcba3719fb672d8db082afa93add6be9ebc4203df85391d20eb824a7a9ea3550b37295186538ff SHA512 b8416b149e26ede6d3f207d7e48316a8b880436c40c4ed5610953ceda0fee4e5b97f1b99f778678514dd115c257fb419b365ed46fdd90a19d444bca8e3e0fe03
diff --git a/sci-libs/flann/files/flann-1.9.1-cuda-9.patch b/sci-libs/flann/files/flann-1.9.1-cuda-9.patch
new file mode 100644
index 000000000000..561c379af9ae
--- /dev/null
+++ b/sci-libs/flann/files/flann-1.9.1-cuda-9.patch
@@ -0,0 +1,22 @@
+From b9dd074526c18e7423085853518b58d602cb0b57 Mon Sep 17 00:00:00 2001
+From: "Petr A. Ermolaev" <petr.a.ermolaev@gmail.com>
+Date: Fri, 4 May 2018 07:50:24 +0000
+Subject: [PATCH] fix compilation via gcc and cuda 9.1 add missing #include
+ <thrust/gather> to kdtree_cuda_3d_index.cu
+
+---
+ src/cpp/flann/algorithms/kdtree_cuda_3d_index.cu | 1 +
+ 1 file changed, 1 insertion(+)
+
+diff --git a/src/cpp/flann/algorithms/kdtree_cuda_3d_index.cu b/src/cpp/flann/algorithms/kdtree_cuda_3d_index.cu
+index e9b05080..8465322e 100644
+--- a/src/cpp/flann/algorithms/kdtree_cuda_3d_index.cu
++++ b/src/cpp/flann/algorithms/kdtree_cuda_3d_index.cu
+@@ -32,6 +32,7 @@
+ #include <flann/util/cuda/result_set.h>
+ // #define THRUST_DEBUG 1
+ #include <cuda.h>
++#include <thrust/gather.h>
+ #include <thrust/copy.h>
+ #include <thrust/device_vector.h>
+ #include <vector_types.h>
diff --git a/sci-libs/flann/flann-1.9.1-r2.ebuild b/sci-libs/flann/flann-1.9.1-r2.ebuild
new file mode 100644
index 000000000000..c240ca1dcf11
--- /dev/null
+++ b/sci-libs/flann/flann-1.9.1-r2.ebuild
@@ -0,0 +1,95 @@
+# Copyright 1999-2019 Gentoo Authors
+# Distributed under the terms of the GNU General Public License v2
+
+EAPI=7
+
+inherit cmake-utils cuda flag-o-matic toolchain-funcs
+
+DESCRIPTION="Fast approximate nearest neighbor searches in high dimensional spaces"
+HOMEPAGE="https://www.cs.ubc.ca/research/flann/"
+SRC_URI="https://github.com/mariusmuja/${PN}/archive/${PV}.tar.gz -> ${P}.tar.gz"
+
+LICENSE="BSD"
+SLOT="0"
+KEYWORDS="~amd64 ~arm ~ppc ~x86 ~amd64-linux ~x86-linux"
+IUSE="cuda doc examples mpi openmp octave static-libs"
+
+BDEPEND="
+	app-arch/unzip
+	doc? ( dev-tex/latex2html )
+"
+DEPEND="
+	cuda? ( >=dev-util/nvidia-cuda-toolkit-5.5 )
+	mpi? (
+		sci-libs/hdf5[mpi]
+		dev-libs/boost:=[mpi]
+	)
+	!mpi? ( !sci-libs/hdf5[mpi] )
+	octave? ( >=sci-mathematics/octave-3.6.4-r1 )
+"
+RDEPEND="${DEPEND}"
+# TODO:
+# readd dependencies for test suite,
+# requires multiple ruby dependencies
+
+PATCHES=(
+	"${FILESDIR}"/${P}-cmake-3.11.patch
+	"${FILESDIR}"/${P}-cuda-9.patch
+)
+
+pkg_pretend() {
+	[[ ${MERGE_TYPE} != binary ]] && use openmp && tc-check-openmp
+}
+
+pkg_setup() {
+	[[ ${MERGE_TYPE} != binary ]] && use openmp && tc-check-openmp
+}
+
+src_prepare() {
+	# bug #302621
+	use mpi && export CXX=mpicxx
+	# produce pure octave files
+	# octave gentoo installation for .m files respected
+	sed -i \
+		-e 's/--mex//' \
+		-e 's/\.mex/\.oct/' \
+		-e '/FILES/s/${MEX_FILE}//' \
+		-e 's:share/flann/octave:share/octave/site/m:' \
+		-e "/CUSTOM_TARGET/a\INSTALL(FILES \${MEX_FILE} DESTINATION libexec/octave/site/oct/${CHOST})" \
+		src/matlab/CMakeLists.txt || die
+	use cuda && cuda_src_prepare
+
+	cmake-utils_src_prepare
+}
+
+src_configure() {
+	append-cxxflags -std=c++11
+
+	# python bindings are split
+	# off into dev-python/pyflann
+	local mycmakeargs=(
+		-DBUILD_C_BINDINGS=ON
+		-DBUILD_PYTHON_BINDINGS=OFF
+		-DPYTHON_EXECUTABLE=
+		-DBUILD_CUDA_LIB=$(usex cuda)
+		-DBUILD_EXAMPLES=$(usex examples)
+		-DBUILD_DOC=$(usex doc)
+		-DBUILD_TESTS=OFF
+		-DBUILD_MATLAB_BINDINGS=$(usex octave)
+		-DUSE_MPI=$(usex mpi)
+		-DUSE_OPENMP=$(usex openmp)
+	)
+	use cuda && mycmakeargs+=(
+		-DCUDA_NVCC_FLAGS="${NVCCFLAGS} --linker-options \"-arsch\""
+	)
+	use doc && mycmakeargs+=( -DDOCDIR=share/doc/${PF} )
+
+	cmake-utils_src_configure
+}
+
+src_install() {
+	cmake-utils_src_install
+	if ! use static-libs; then
+		find "${D}" -name 'lib*.a' -delete || die
+	fi
+}
diff --git a/sci-libs/flann/flann-9999.ebuild b/sci-libs/flann/flann-9999.ebuild
index e8b80e9f855f..04b6a5770ac6 100644
--- a/sci-libs/flann/flann-9999.ebuild
+++ b/sci-libs/flann/flann-9999.ebuild
@@ -1,12 +1,12 @@
-# Copyright 1999-2018 Gentoo Foundation
+# Copyright 1999-2019 Gentoo Authors
 # Distributed under the terms of the GNU General Public License v2
 
-EAPI=6
+EAPI=7
 
 inherit cmake-utils cuda flag-o-matic git-r3 toolchain-funcs
 
 DESCRIPTION="Fast approximate nearest neighbor searches in high dimensional spaces"
-HOMEPAGE="http://www.cs.ubc.ca/research/flann/"
+HOMEPAGE="https://www.cs.ubc.ca/research/flann/"
 EGIT_REPO_URI="https://github.com/mariusmuja/flann.git"
 
 LICENSE="BSD"
@@ -14,24 +14,25 @@ SLOT="0"
 KEYWORDS=""
 IUSE="cuda doc examples mpi openmp octave static-libs"
 
-RDEPEND="
+BDEPEND="
+	doc? ( dev-tex/latex2html )
+"
+DEPEND="
+	app-arch/lz4:=
 	cuda? ( >=dev-util/nvidia-cuda-toolkit-5.5 )
 	mpi? (
 		sci-libs/hdf5[mpi]
 		dev-libs/boost:=[mpi]
 	)
 	!mpi? ( !sci-libs/hdf5[mpi] )
-	octave? ( >=sci-mathematics/octave-3.6.4-r1 )"
-DEPEND="${RDEPEND}
-	app-arch/unzip
-	doc? ( dev-tex/latex2html )"
+	octave? ( >=sci-mathematics/octave-3.6.4-r1 )
+"
+RDEPEND="${DEPEND}"
 # TODO:
 # readd dependencies for test suite,
 # requires multiple ruby dependencies
 
-PATCHES=(
-	"${FILESDIR}"/flann-1.9.1-cmake-3.11.patch
-)
+PATCHES=( "${FILESDIR}"/flann-1.9.1-cmake-3.11.patch )
 
 pkg_pretend() {
 	[[ ${MERGE_TYPE} != binary ]] && use openmp && tc-check-openmp
@@ -67,7 +68,6 @@ src_configure() {
 		-DBUILD_C_BINDINGS=ON
 		-DBUILD_PYTHON_BINDINGS=OFF
 		-DPYTHON_EXECUTABLE=
-		-DDOCDIR=share/doc/${PF}
 		-DBUILD_CUDA_LIB=$(usex cuda)
 		-DBUILD_EXAMPLES=$(usex examples)
 		-DBUILD_DOC=$(usex doc)
@@ -79,6 +79,8 @@ src_configure() {
 	use cuda && mycmakeargs+=(
 		-DCUDA_NVCC_FLAGS="${NVCCFLAGS} --linker-options \"-arsch\""
 	)
+	use doc && mycmakeargs+=( -DDOCDIR=share/doc/${PF} )
+
 	cmake-utils_src_configure
 }
 
diff --git a/sci-libs/keras-applications/Manifest b/sci-libs/keras-applications/Manifest
index 1cf3c19789ff..aa7fc51a1d25 100644
--- a/sci-libs/keras-applications/Manifest
+++ b/sci-libs/keras-applications/Manifest
@@ -1,7 +1,9 @@
 DIST keras-applications-1.0.4.tar.gz 285031 BLAKE2B 7208752b45f825949eb2718e4e276f7c3e4a523b2668975d6834084c42cdc2dc3efb57fd0ef24401bc0dd35453f4798422f6afd9583249237cd35941939c25f4 SHA512 10a793a60b7084ea641035618e178d5b1261da5826292db25134f9886b191bd152dfa8fa686a6270fa56a7fc1831bda07e77d12597972b186a9354f857feb1d0
 DIST keras-applications-1.0.5.tar.gz 26556 BLAKE2B 263a5917ca6aa58f47fee09849ba149cdf6742b3278ce2f2dd7ace5f1a445a9eb53f218f906ec9c1384a4e7bbe87d40e3ef0fcc22261e64805042822b14a0684 SHA512 6ac0312b8eb6781c93cb3ffad09b8b631831855f35247f939b6fccfe9ababb85e3b0e5a59f9f30f5265d96290bf4f61e1046dbcc8333f914065c566040012ddc
 DIST keras-applications-1.0.6.tar.gz 284862 BLAKE2B 1f1b34574dc2af3e66983334fd6fad626b810f134f17fbf4dfae161d8f0c695f52da0ef8e689513834a2c7031cff7f0c58773d834932d6db96ead4a68a8cd765 SHA512 11587ec9ab00c667d6b1e9c7c35ea6746c044986668a9f24f3ca6ec80e43d37839fa557bf531efd4c05c3518b3fd390c00806bfa672576e9b4b389412527e9e1
+DIST keras-applications-1.0.7.tar.gz 289570 BLAKE2B 5f6fe2419b2de41f718e6beae56c8c4910efe0e6c282ad32b792f50a8b9ebc88c866eed84fb8c7dcbbd1680de605036a0012458af6d14250b1f8624ead5013b7 SHA512 5f2c5fb7b7f644a881f8cc9040633a69d3a72562206dd0601c8b31bf4fd3bb2aeee07a0d7040311f0fd42f16330bc249d306cdfa01c7b60717b05726040a0b78
 EBUILD keras-applications-1.0.4.ebuild 554 BLAKE2B 8492cef67af05dc39a0ed36f0afdedb568983de1c6225417ee143ed73017cc76e38307ac7e95aaeebed6494d1a8b2ccbbfe9eb1b5a86d66cb5597d9650debd43 SHA512 b0ab5268039f213cf46c88198f2153acdacf672e42e6d51bb85c6115d7ceca39fe78472a71af2a2e93b6ef176a44b0d9000fd8ef693fa967158432a98d5151a9
 EBUILD keras-applications-1.0.5.ebuild 683 BLAKE2B ad47e5ec1d26eb1a03ac233ce886967bf793b0948d4cc16f82263516fc418eab7915f076c86759a9845cf7de22f3efc6e293cb6fef013b0df797b9aebf863194 SHA512 259fce92b4ba451556a34a40fa1dc2265979d24cb30cb889729a2e5d94df92a123a05c946b1483d963c02847b3a5af9b6ad52e3195beb6ed9990c866c6f1584b
 EBUILD keras-applications-1.0.6.ebuild 557 BLAKE2B bc2a9d22264847ad6f6ef0152cb483226f29644510a752f3c2377d6b08790dae2a44838e55ea6602a0a6c294eba5bb21d28faebc43e85118f359818ee467bb96 SHA512 3ff0ea369874778064341eca06b8aedb9d886cae1c0278b53760fb2d481981ed5a81a50496493579fc98f2aa2df1608e00cda17257dd649db9e6885a5306a917
+EBUILD keras-applications-1.0.7.ebuild 561 BLAKE2B 428e826b883af98b9e27abb6d26afffd0f6dc0c8777f0d2e4bdd70917c1448f890e81ec1281ba9c683cea8024d880ea8e21aedde5dd457b204a7ca05d1ffb1b2 SHA512 a3a2ebf399cdfaad7a8e51992171f66570f7f42025c6f60f1d101611582396e9685570d4b1cedbbec2ce5c10d8e79fd16062f6e01b4d437e2043e009759d0cd3
 MISC metadata.xml 621 BLAKE2B 4f375ddfcfed6172df186350f7bd3dbfbcacea34f555b14719af43f58b140d73e378cd0a5efd8438ed2a0006f3552febc684b4fce85aeb88fb2c9bf819c06c4b SHA512 9dbb366d483843279cc7532b56a877313a7c39de25c93c313a2957092f9766ce5715a83dd87ef116d1733a7cc399319025ce1eb0e7ad174e2b7441360a9f5560
diff --git a/sci-libs/keras-applications/keras-applications-1.0.7.ebuild b/sci-libs/keras-applications/keras-applications-1.0.7.ebuild
new file mode 100644
index 000000000000..dcf6a0b2bd09
--- /dev/null
+++ b/sci-libs/keras-applications/keras-applications-1.0.7.ebuild
@@ -0,0 +1,20 @@
+# Copyright 1999-2019 Gentoo Authors
+# Distributed under the terms of the GNU General Public License v2
+
+EAPI=6
+
+PYTHON_COMPAT=( python2_7 python{3_5,3_6,3_7} )
+inherit distutils-r1
+
+DESCRIPTION="Keras deep learning library reference implementations of deep learning models"
+HOMEPAGE="https://keras.io/applications/"
+SRC_URI="https://github.com/keras-team/${PN}/archive/${PV}.tar.gz -> ${P}.tar.gz"
+
+LICENSE="MIT"
+SLOT="0"
+KEYWORDS="~amd64 ~x86"
+IUSE=""
+
+RDEPEND="dev-python/numpy[${PYTHON_USEDEP}]"
+DEPEND="${RDEPEND}
+	dev-python/setuptools[${PYTHON_USEDEP}]"
diff --git a/sci-libs/keras-preprocessing/Manifest b/sci-libs/keras-preprocessing/Manifest
index 98dfab31a2f2..6bec831ef981 100644
--- a/sci-libs/keras-preprocessing/Manifest
+++ b/sci-libs/keras-preprocessing/Manifest
@@ -1,7 +1,9 @@
 DIST keras-preprocessing-1.0.2.tar.gz 34762 BLAKE2B 3b4766aa48d6e6cfd50817af97c8f2faf9ae7e78007f7dddcbf1f4ded072657a5b94ac4b563d090dd8a8437a249b64fea61a1cd5f680767f14611fa6fe92dd3a SHA512 d5a558c3d9741c298ea3737bfb04788bd2cbecefe14aa53e0f6ccde891ad9304ec673a888dc53a2f954c0b718ce31d9d35095d3f21e15d73248acfc8105457d9
 DIST keras-preprocessing-1.0.3.tar.gz 36360 BLAKE2B 4a5d8e8d1211434b212a509acd563ef38f043ffc2f856019205e5e9b6806303c824bdfd19009a38a19ca961a9ece7719dcecf41f494b19da11084d5fa733e807 SHA512 98501a96eeca29d13a50f418b8d7417911cba50f0a3097b9576684a78c60441b93296ac3fb544f951f40990f5c8b7c0a15e9da3ac336119b0234caec8d182f4c
 DIST keras-preprocessing-1.0.5.tar.gz 39776 BLAKE2B 459318d4bdece8176f7a268da3070c71f8fa44a2425acd6dd3d4cc2c023a4a6398c3298f29c7ea2d273353e6898eb9218043451a7817e618ecc2eb6e38bc74e9 SHA512 64b5e7f2fea0ec21bb43853b998f8e628185e82846c12320d6c60bb7bd9e508dd2497108c04040e2d8bbebc3b7b7cac3fbb08354bb31a4b155c5ed2bc5dbb98d
+DIST keras-preprocessing-1.0.9.tar.gz 46476 BLAKE2B af80a6647bb56f8c4dba93120bc2b70db36d2c6a0e36c3be9a4843e5c36c9ffe50db1cd9396eecd47f6c0595c110825d70d2e6b28a29a0a199b5cfcc499e4440 SHA512 93ef9b294638bfeaea82170b323f08b261a2519f5ee8b9aac7d88e5b32c6486646d91075cea71bfbc27780c8af55125319873361f0431d48b451e574d1e7a400
 EBUILD keras-preprocessing-1.0.2.ebuild 602 BLAKE2B 2e9a1d1fe5af86239dd6c28ad262506b1e6d52ca853daa89130ac536ae37de0b83954cbf3cfddf4a1e25e20c945aee9d3a28f1d5ea192eead788960294cd6410 SHA512 eab972f49c8c94d4c2a14b2f643e9ebc164657fc637605ee683eabb7eefa414245b65859dd01b60387c9b1b638bc4038bbafeb1bf2cdf643b88695bdf7f7cce1
 EBUILD keras-preprocessing-1.0.3.ebuild 608 BLAKE2B 735d172d2c0b217f69cb9a8aca03f2cb6af43d6be3172bcf15e5e9aeac3deeea31622b231b30442473852b17a25f574b48c56205b1952775d1278be5acdb6ed9 SHA512 2b54605d8c1542153c0f936c250f78162b8d33dc5868a4e028d5855f7b159f0dc3c1075f9cae428943a5ef163789edc120ed0050fb9a5a30babd2376093c6379
 EBUILD keras-preprocessing-1.0.5.ebuild 605 BLAKE2B 018d2bde6dacbf1b6d3e85feee58abf3f9bcab16812f00a553a3d77a02bd64c935d7e41a95d0f7d795b2926d46c2ce5b432fe22d59a84e87e59de0d555b7fe28 SHA512 660408f123b8242421a5d04ac9c4e2ec25f08120e3049c702e930f8d35b2cd85d16dcb48d82c680ccd36765125822ee00ede0f3af9e0484255f04bbb26593fae
+EBUILD keras-preprocessing-1.0.9.ebuild 609 BLAKE2B 6eb32367a3e9cbfecd7c211b2378d48d68afcb8801314dacd2d168fddf285cfa5aa3d10b66f15f670947efa0f0a13c89290cb0e65c649bec257ef274ddaf5f6a SHA512 198cf1d5796e5d727abd898e8f96a8ecca2cecfd8e26cd88e22f8e04c02800601cf7ccfa7076b84e8c8dd88dacef6173a52791ae66b19efd513162ffbd76e3bc
 MISC metadata.xml 585 BLAKE2B a2f92ac4e2b9af055313a13de9bcbaee7ab7ca2efa4790c82027aece4b629bfa7a73c5ed0286b0f24f1853330057527009afe6ab1722f19d9c504a9d0737e827 SHA512 371cc3f5897bd28c62642a8857a22e775e24aa917bc0e58bb4de4e0a2a6580174ba35cfda2e8dd83599e2180fdfb3f11a953e7076c6d87073e1465b145b115e9
diff --git a/sci-libs/keras-preprocessing/keras-preprocessing-1.0.9.ebuild b/sci-libs/keras-preprocessing/keras-preprocessing-1.0.9.ebuild
new file mode 100644
index 000000000000..51974c566595
--- /dev/null
+++ b/sci-libs/keras-preprocessing/keras-preprocessing-1.0.9.ebuild
@@ -0,0 +1,22 @@
+# Copyright 1999-2019 Gentoo Authors
+# Distributed under the terms of the GNU General Public License v2
+
+EAPI=6
+
+PYTHON_COMPAT=( python2_7 python{3_5,3_6,3_7} )
+inherit distutils-r1
+
+DESCRIPTION="Easy data preprocessing and data augmentation for deep learning models"
+HOMEPAGE="https://keras.io/"
+SRC_URI="https://github.com/keras-team/${PN}/archive/${PV}.tar.gz -> ${P}.tar.gz"
+
+LICENSE="MIT"
+SLOT="0"
+KEYWORDS="~amd64 ~x86"
+IUSE=""
+
+RDEPEND="dev-python/numpy[${PYTHON_USEDEP}]
+	sci-libs/scipy[${PYTHON_USEDEP}]
+	dev-python/six[${PYTHON_USEDEP}]"
+DEPEND="${RDEPEND}
+	dev-python/setuptools[${PYTHON_USEDEP}]"
diff --git a/sci-libs/lmfit/Manifest b/sci-libs/lmfit/Manifest
index 50b129ff04ef..c31cc91894f3 100644
--- a/sci-libs/lmfit/Manifest
+++ b/sci-libs/lmfit/Manifest
@@ -1,11 +1,12 @@
 AUX lmfit-7.0-cmake.patch 2226 BLAKE2B 317d232718c8172508d67de527161b074676bf62ff4da45d21a9444626fb2e84150c0b3fb099a6a9c5247ea2ec9b53c89b4b0f6d64f8b3d6352629e440e89ad4 SHA512 a9e95299baac18818a131ac67c82d49777e7cae6629d9f6bedc2e7f175f2d6a416888d973064df13d79315a5445d95c0e9a2e3d5fc1ac476fdb2b688dbe601e3
 AUX lmfit-8.0-cmake.patch 2251 BLAKE2B 4549bfb77187c0bc1040a3d3e4e3233445536d039b0d185e4a2d160fcf4d7c0ba2584bd0d943f9527c4af141688a0940763f7c23893263f7af1e294337710e65 SHA512 d3bcb2a9aa882c8240c873a65cc4b8d198ca26990d64d87988ea09e8398b10f83aedd4367bf65cb949091a6a4c3b4d70911658e46808d852cc26c3af2f6e032f
+AUX lmfit-8.2.2-cmake.patch 2769 BLAKE2B 7f67349b93cde9bf14ce5295d3a32a73301897e1643be5beea71ccb8e9d7a9a128c4160b7eb5dcbdfb1189ee6e774e151bd5f71b3af4d7ec0a00ba61f7ad79f1 SHA512 93b1f5242e1152dea4910c96b2c561a370f2e2a78fc730b5ee00257049f96a253badf5d7752a1bbac320df43e436d8f4d913fbf8d40f7b36e3579efb16147417
 DIST lmfit-5.1.tgz 345077 BLAKE2B df27621745601ffacd2110b28f3e3ea2b06d4c8c3c8fad5dda13bb4d6c2bd9f2a793ff88fab4f6d8c78075278bb26f3f424bd0074095e67ab1780a9d57b72b4b SHA512 1df6ed51d7f2137529793948f6c57ef3658932c9198776925a9f6e1d586352651c93aa053a064db7a201dbb848a7108f284223feff45171d142087539d834b29
 DIST lmfit-6.4.tgz 388809 BLAKE2B 48aa619642ac3fd009ec6a8f8b44ee4c800fc3f33e2603b557218cdf37c789159dc3947a648d560b9e2dd7fef08a6644fd25ac61505859dc3b1d151eeea58c27 SHA512 2bd0f24dd4638345b8b1ce6803ddcf45ca3ef888eb285e99f9f158c2e30b0f96016d9d84a112cdbf28f2ba98470e54fe773416179a65264426043c9a5186757d
 DIST lmfit-7.0.tgz 37950 BLAKE2B a509110f70e7e863d1172b8d91f7439763f0434702f265751e9955494f4982b4c17f0baaa080af86e5cae7f535555e27b98b45ba6a529061d107e53bdb9fd698 SHA512 78f479786c6e5c417781c6d629f5a517335fac70df049fafdefd511485da4e542c988d69c998f96eaab4306160de4bb09a631ca6ffff74bba70c51428d734fc3
-DIST lmfit-8.0.tgz 42833 BLAKE2B d2ad9f5cd35997c8ce6827148e9ca748f3d14044f515a927442e9e5f57508cdfb729cd7172987a0e94284d7e93f7aafc0cb572137f201994c8d3ad9a9fb64c9b SHA512 3b4e4af6c70269f8752428d416e014d4e69df3f73b25e9ba16dd07afc03598a1dca08050cecba29a3b2651e003e703ba4412716100b1bb55b1830f74f16da676
+DIST lmfit-8.2.2.tgz 31970 BLAKE2B 67eebc0e58d3d78057afcd84f35adcfea783c8501a5f8934dd07c38eb2419b1c43bedd3401a830a993005913138bdf8d1dc73c2142983b9f881f0db9bec06b93 SHA512 5835dce914027429cb36765543cf6b872e4ef1acd8feaeca281f9edf286fda89db78fbc0713dcfea4e4f2fe55a1b05317e6428980060bc3acce579ef1fa0c271
 EBUILD lmfit-5.1.ebuild 516 BLAKE2B 51a6715eeca7a7c3b6172530af4d6c908bdbcb3b3a5339e60c1af9bf60277b4275f49cfbf68eb3072f7f3f7864f9890ab486093253c72f0988673ea764b2513f SHA512 3ff7c3bb21bf2c95ce466f3168c2362a5fd3a0e8085621e0bae0d6b28191bc5d7368f4e09afc87ffe0720ac4740cdfeb27ee4bdc5cd83006f6837c2ac46775f9
 EBUILD lmfit-6.4.ebuild 516 BLAKE2B 51a6715eeca7a7c3b6172530af4d6c908bdbcb3b3a5339e60c1af9bf60277b4275f49cfbf68eb3072f7f3f7864f9890ab486093253c72f0988673ea764b2513f SHA512 3ff7c3bb21bf2c95ce466f3168c2362a5fd3a0e8085621e0bae0d6b28191bc5d7368f4e09afc87ffe0720ac4740cdfeb27ee4bdc5cd83006f6837c2ac46775f9
 EBUILD lmfit-7.0.ebuild 547 BLAKE2B ca24a9539256e249cb06d88ae1077a13a0c3ff62257d9eaa0751b3b56ecb6e4fd6bba4d8fa8553493eeefbd361b10e4fa056d807f151fce0077084d9220400e2 SHA512 1c4440f1d2a3a9ab910a740b731ae83645d7a62a38417639080cf5845880c5e498be08ac8a5a58545f6daeec963f9f784d19ed03054952ad4230ffdb7f5e1c86
-EBUILD lmfit-8.0.ebuild 543 BLAKE2B b77c765248184b82012abb73e17143784f6bacd85e72ee2d77585098294b5dcd9de00e9420d955f5ef4c32e27e93509748dcd7643b06f167c446d35fd47acd61 SHA512 5e0476aac93c71fc62c78e25e0b17b25dee340268857984c8e130bf698a5c232fbe70abfeac016e8f26e207b3f7f3ad6ab0a0baf9b4778c1559a85826e52f4cc
+EBUILD lmfit-8.2.2.ebuild 543 BLAKE2B df340a25fdb763f0db342b1111757be2db5e9eaf40c34d4bf35a043feee3a073bd985080799a16dfac1d1cb1ff7b37120bb29f00757a64753cdec0b1c2f92e1d SHA512 2b34186319e98e2775f9fa9438d29fa09b8ec56b98bc7efe3ee3f2e413fe64b3eefd3cd6f83019a876cecc195c5aede3a59808e6a16e2c236af792ff0e65abae
 MISC metadata.xml 328 BLAKE2B fe29c76e5725821e31de0e2b14e0b975d5b8838e9907bf9ddacdb40cddc0529550fe83468226bf045fcf7ad95b2e56d31dc564dcf7e6d9a0401317313e2f0f27 SHA512 e6cf20d6c9130a16ce37c44890f928cb5dca1bb67425d8cdcc1ab7db22f7c8e2ac513b11c33b0f0495e25dd389ac926f2099d0253288eb1ed290f30e655a1c4f
diff --git a/sci-libs/lmfit/files/lmfit-8.2.2-cmake.patch b/sci-libs/lmfit/files/lmfit-8.2.2-cmake.patch
new file mode 100644
index 000000000000..258f70a533d4
--- /dev/null
+++ b/sci-libs/lmfit/files/lmfit-8.2.2-cmake.patch
@@ -0,0 +1,85 @@
+From 72dae8c23604288331c9a7f03f60ec792a384121 Mon Sep 17 00:00:00 2001
+From: christoph junghans <junghans@votca.org>
+Date: Mon, 22 Oct 2018 21:00:00 -0600
+Subject: [PATCH] cmake: minor distribution tweaks
+
+- use gnuinstalldirs to allow to configure install dirs
+- allow to disable injecting c flags
+
+signed-off-by: christoph junghans <junghans@votca.org>
+Signed-off-by: Alexey Shvetsov <alexxy@gentoo.org>
+---
+ CMakeLists.txt     | 10 +++++++---
+ lib/CMakeLists.txt |  4 ++--
+ man/CMakeLists.txt |  4 ++--
+ 3 files changed, 11 insertions(+), 7 deletions(-)
+
+diff --git a/CMakeLists.txt b/CMakeLists.txt
+index dbb571e..279f06a 100644
+--- a/CMakeLists.txt
++++ b/CMakeLists.txt
+@@ -4,7 +4,7 @@ cmake_policy(SET CMP0048 NEW)
+ list(APPEND CMAKE_MODULE_PATH ${CMAKE_CURRENT_SOURCE_DIR}/cmake)
+ include(PreventInSourceBuilds)
+ 
+-project(lmfit VERSION 8.2.1 LANGUAGES C)
++project(lmfit VERSION 8.2.2 LANGUAGES C)
+ 
+ # --- Declare project-wide user flags, and set default values ---
+ option(FITTEST "Build with FitTest" OFF)
+@@ -23,12 +23,16 @@ else()
+ endif()
+ 
+ include(CTest)
++include(GNUInstallDirs)
+ 
+-set(destination ${CMAKE_INSTALL_PREFIX})
++option(INJECT_C_FLAGS "Inject a bunch of useful c flags" ON)
++if (INJECT_C_FLAGS)
++    set(CMAKE_C_FLAGS "${CMAKE_CXX_FLAGS} -g -O2 -pedantic -Wall -Wno-sign-compare -Wno-unused-result -Wno-parentheses  -Wno-unknown-pragmas")
++endif()
+ 
+ configure_file("lmfit.pc.in" "lmfit.pc" @ONLY)
+ install(FILES "${CMAKE_CURRENT_BINARY_DIR}/lmfit.pc"
+-    DESTINATION "${destination}/lib/pkgconfig/")
++	DESTINATION "${CMAKE_INSTALL_LIBDIR}/pkgconfig/")
+ 
+ add_subdirectory(lib)
+ add_subdirectory(demo)
+diff --git a/lib/CMakeLists.txt b/lib/CMakeLists.txt
+index a266f4e..e071a3c 100644
+--- a/lib/CMakeLists.txt
++++ b/lib/CMakeLists.txt
+@@ -18,9 +18,9 @@ link_libm(${library_name})
+ 
+ install(
+     TARGETS ${library_name} LIBRARY
+-    DESTINATION ${destination}/lib
++    DESTINATION ${CMAKE_INSTALL_LIBDIR}
+     COMPONENT Libraries)
+ install(
+     FILES ${inc_files}
+-    DESTINATION ${destination}/include
++    DESTINATION ${CMAKE_INSTALL_INCLUDEDIR}
+     COMPONENT Headers)
+diff --git a/man/CMakeLists.txt b/man/CMakeLists.txt
+index d4595fd..5505713 100644
+--- a/man/CMakeLists.txt
++++ b/man/CMakeLists.txt
+@@ -15,11 +15,11 @@ function(one_page pname section)
+         )
+     install(
+         FILES ${CMAKE_CURRENT_BINARY_DIR}/${pname}.${section}
+-        DESTINATION "${CMAKE_INSTALL_PREFIX}/share/man/man${section}"
++        DESTINATION "${CMAKE_INSTALL_MANDIR}/man${section}"
+         )
+     install(
+         FILES ${CMAKE_CURRENT_BINARY_DIR}/${pname}.html
+-        DESTINATION "${CMAKE_INSTALL_PREFIX}/share/doc/lmfit/html"
++	DESTINATION "${CMAKE_INSTALL_DOCDIR}-${CMAKE_PROJECT_VERSION}/html"
+         )
+ endfunction()
+ 
+-- 
+2.20.1
+
diff --git a/sci-libs/lmfit/lmfit-8.0.ebuild b/sci-libs/lmfit/lmfit-8.2.2.ebuild
index db342f68909e..6d1f6b2e4b60 100644
--- a/sci-libs/lmfit/lmfit-8.0.ebuild
+++ b/sci-libs/lmfit/lmfit-8.2.2.ebuild
@@ -1,4 +1,4 @@
-# Copyright 1999-2018 Gentoo Authors
+# Copyright 1999-2019 Gentoo Authors
 # Distributed under the terms of the GNU General Public License v2
 
 EAPI=6
diff --git a/sci-libs/tensorflow-estimator/Manifest b/sci-libs/tensorflow-estimator/Manifest
new file mode 100644
index 000000000000..1ca67369b4f8
--- /dev/null
+++ b/sci-libs/tensorflow-estimator/Manifest
@@ -0,0 +1,4 @@
+AUX 0001-pip_package-modularize-build-script-to-allow-distros.patch 4250 BLAKE2B 79702d82e629e2159cbe33efe8dd91536d904536f4bbf3d4ad02186916a09786cde6ce29a63acaafe3169dbd7904448461f2b557f33218651351fd87d42ed613 SHA512 42bb57433f61b3a9b1a93c897202bacdf44a8277ea0e64257ac3b60c9b964a6441345c9b222fb26afb1d66a53323fe38c29811adfd6354032cb5d3f85dde0816
+DIST tensorflow-estimator-1.13.0_rc0.tar.gz 531012 BLAKE2B 1398fdec5b81a7bab7ccfb2d37b8094c4ef4b96562e2c6b8b4e565cad3c234245b5d8dfb30a79b73302fc0764b1d3503d4ee2d4363a9d2e635b36fb8e2b726b4 SHA512 c8ad78d0df294c7471f1577880905be08edcc038878e9d197b975f33f91192e9c413d13fa70e8fa1ff760ad6bf6141f199322bf2076568690e75fa38bd5a4cf4
+EBUILD tensorflow-estimator-1.13.0_rc0.ebuild 1329 BLAKE2B ed4451574acbc5067715148a5a365017d3b4b42a99aece10be94d6b3d1683f3d0cc758ff6dc89c7c4b1d9ac1974969b9ab3f320d6434014f16ef1d405d137dc1 SHA512 5db769ca08138e3fe4a696708049b96eb442c2e2484b737f821eff5da89575d671a57c156fc583819f345d53e4a800503df3517355d76cd4440af2ac6410ae61
+MISC metadata.xml 580 BLAKE2B fb81098968d0fdf34a3f28dabee76df16be5393cb9ea79ee4fa670af985ef3f70bb83f14be84a0cc0e564e6626007c2977851f8299460b483f88325be155f4cc SHA512 6aef6523502a3bcf0b2ca59cf7480b92032b53020cccfa715203e5a48c960ecc92c94fa75f98a234da2d51662d43e0c1a85a1537f3ab67287cdb8183476a0efa
diff --git a/sci-libs/tensorflow-estimator/files/0001-pip_package-modularize-build-script-to-allow-distros.patch b/sci-libs/tensorflow-estimator/files/0001-pip_package-modularize-build-script-to-allow-distros.patch
new file mode 100644
index 000000000000..140e23c84bb5
--- /dev/null
+++ b/sci-libs/tensorflow-estimator/files/0001-pip_package-modularize-build-script-to-allow-distros.patch
@@ -0,0 +1,153 @@
+From 897b25418ae0f77bcee7fdd7070d5c22677dc218 Mon Sep 17 00:00:00 2001
+From: Jason Zaman <jason@perfinion.com>
+Date: Sat, 2 Feb 2019 15:19:44 +0800
+Subject: [PATCH] pip_package: modularize build script to allow distros to
+ install more flexibly
+
+Gentoo Linux handles python modules slightly differently and packaging
+wheels is complicated. We prefer to run setup.py directly ourselves
+rather than build a wheel and then install from there.
+
+This modularizes build_pip_package.sh to allow running parts separately.
+using --src srcdir will prepare the package in a known dir so the distro
+package can take it from there. If only dstdir is given (either with
+--dst or as the only argument to preserve backwards compat) then
+behaviour is the same as before, the sources are prepared and the wheel
+is built and placed in dstdir.
+
+Signed-off-by: Jason Zaman <jason@perfinion.com>
+---
+ .../tools/pip_package/build_pip_package.sh    | 73 +++++++++++++++++--
+ 1 file changed, 66 insertions(+), 7 deletions(-)
+
+diff --git a/tensorflow_estimator/tools/pip_package/build_pip_package.sh b/tensorflow_estimator/tools/pip_package/build_pip_package.sh
+index 5d06dd6..1667169 100755
+--- a/tensorflow_estimator/tools/pip_package/build_pip_package.sh
++++ b/tensorflow_estimator/tools/pip_package/build_pip_package.sh
+@@ -23,10 +23,8 @@ function real_path() {
+   is_absolute "$1" && echo "$1" || echo "$PWD/${1#./}"
+ }
+ 
+-function build_wheel() {
++function prepare_src() {
+   TMPDIR="$1"
+-  DEST="$2"
+-  PROJECT_NAME="$3"
+ 
+   mkdir -p "$TMPDIR"
+   echo $(date) : "=== Preparing sources in dir: ${TMPDIR}"
+@@ -67,6 +65,17 @@ function build_wheel() {
+     touch "${TMPDIR}/tensorflow_estimator/contrib/estimator/python/__init__.py"
+     touch "${TMPDIR}/tensorflow_estimator/contrib/estimator/python/estimator/__init__.py"
+   fi
++}
++
++function build_wheel() {
++  if [ $# -lt 2 ] ; then
++    echo "No src and dest dir provided"
++    exit 1
++  fi
++
++  TMPDIR="$1"
++  DEST="$2"
++  PROJECT_NAME="$3"
+ 
+   pushd ${TMPDIR} > /dev/null
+   echo $(date) : "=== Building wheel"
+@@ -75,15 +84,39 @@ function build_wheel() {
+   cp dist/* ${DEST}
+   popd > /dev/null
+   echo $(date) : "=== Output wheel file is in: ${DEST}"
+-  rm -rf "${TMPDIR}"
++}
++
++function usage() {
++  echo "Usage:"
++  echo "$0 [--src srcdir] [--dst dstdir] [options]"
++  echo "$0 dstdir [options]"
++  echo ""
++  echo "    --src                 prepare sources in srcdir"
++  echo "                              will use temporary dir if not specified"
++  echo ""
++  echo "    --dst                 build wheel in dstdir"
++  echo "                              if dstdir is not set do not build, only prepare sources"
++  echo ""
++  echo "  Options:"
++  echo "    --project_name <name> set project name to name"
++  echo "    --nightly             build tensorflow_estimator nightly"
++  echo ""
++  exit 1
+ }
+ 
+ function main() {
+   NIGHTLY_BUILD=0
++  PROJECT_NAME=""
++  SRCDIR=""
++  DSTDIR=""
++  CLEANSRC=1
+ 
+   while true; do
+     if [[ -z "$1" ]]; then
+       break
++    elif [[ "$1" == "--help" ]]; then
++      usage
++      exit 1
+     elif [[ "$1" == "--nightly" ]]; then
+       NIGHTLY_BUILD=1
+     elif [[ "$1" == "--project_name" ]]; then
+@@ -92,6 +125,19 @@ function main() {
+         break
+       fi
+       PROJECT_NAME="$1"
++    elif [[ "$1" == "--src" ]]; then
++      shift
++      if [[ -z "$1" ]]; then
++        break
++      fi
++      SRCDIR="$(real_path $1)"
++      CLEANSRC=0
++    elif [[ "$1" == "--dst" ]]; then
++      shift
++      if [[ -z "$1" ]]; then
++        break
++      fi
++      DSTDIR="$(real_path $1)"
+     else
+       DSTDIR="$(real_path $1)"
+     fi
+@@ -105,16 +151,29 @@ function main() {
+     fi
+   fi
+ 
+-  SRCDIR="$(mktemp -d -t tmp.XXXXXXXXXX)"
+-
+-  if [[ -z "$DSTDIR" ]]; then
++  if [[ -z "$DSTDIR" ]] && [[ -z "$SRCDIR" ]]; then
+     echo "No destination dir provided"
++    usage
+     exit 1
+   fi
+ 
++  if [[ -z "$SRCDIR" ]]; then
++    # make temp srcdir if none set
++    SRCDIR="$(mktemp -d -t tmp.XXXXXXXXXX)"
++  fi
+ 
++  prepare_src "$SRCDIR"
++
++  if [[ -z "$DSTDIR" ]]; then
++      # only want to prepare sources
++      exit
++  fi
+ 
+   build_wheel "$SRCDIR" "$DSTDIR" "$PROJECT_NAME"
++
++  if [[ $CLEANSRC -ne 0 ]]; then
++    rm -rf "${TMPDIR}"
++  fi
+ }
+ 
+ main "$@"
+-- 
+2.19.2
+
diff --git a/sci-libs/tensorflow-estimator/metadata.xml b/sci-libs/tensorflow-estimator/metadata.xml
new file mode 100644
index 000000000000..2d40af6762c9
--- /dev/null
+++ b/sci-libs/tensorflow-estimator/metadata.xml
@@ -0,0 +1,16 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
+<pkgmetadata>
+	<maintainer type="person">
+		<email>perfinion@gentoo.org</email>
+		<name>Jason Zaman</name>
+	</maintainer>
+	<longdescription lang="en">
+		TensorFlow Estimator is a high-level TensorFlow API that greatly
+		simplifies machine learning programming. Estimators encapsulate
+		training, evaluation, prediction, and exporting for your model.
+	</longdescription>
+	<upstream>
+		<remote-id type="github">tensorflow/estimator</remote-id>
+	</upstream>
+</pkgmetadata>
diff --git a/sci-libs/tensorflow-estimator/tensorflow-estimator-1.13.0_rc0.ebuild b/sci-libs/tensorflow-estimator/tensorflow-estimator-1.13.0_rc0.ebuild
new file mode 100644
index 000000000000..766a3206621e
--- /dev/null
+++ b/sci-libs/tensorflow-estimator/tensorflow-estimator-1.13.0_rc0.ebuild
@@ -0,0 +1,61 @@
+# Copyright 1999-2019 Jason Zaman
+# Distributed under the terms of the GNU General Public License v2
+
+EAPI=7
+
+PYTHON_COMPAT=( python2_7 python{3_5,3_6} )
+MY_PN="estimator"
+MY_PV=${PV/_rc/-rc}
+MY_P=${MY_PN}-${MY_PV}
+
+inherit bazel distutils-r1 flag-o-matic toolchain-funcs
+
+DESCRIPTION="A high-level TensorFlow API that greatly simplifies machine learning programming"
+HOMEPAGE="https://www.tensorflow.org/"
+
+LICENSE="Apache-2.0"
+SLOT="0"
+KEYWORDS="~amd64"
+IUSE=""
+
+SRC_URI="https://github.com/tensorflow/${MY_PN}/archive/v${MY_PV}.tar.gz -> ${P}.tar.gz"
+
+RDEPEND="sci-libs/tensorflow[python,${PYTHON_USEDEP}]"
+DEPEND="${RDEPEND}"
+BDEPEND="
+	dev-java/java-config"
+
+S="${WORKDIR}/${MY_P}"
+
+PATCHES=(
+	"${FILESDIR}/0001-pip_package-modularize-build-script-to-allow-distros.patch"
+)
+DOCS=( CONTRIBUTING.md README.md )
+
+src_prepare() {
+	bazel_setup_bazelrc
+	default
+}
+
+src_compile() {
+	export JAVA_HOME=$(java-config --jre-home)
+
+	ebazel build //tensorflow_estimator/tools/pip_package:build_pip_package
+	ebazel shutdown
+
+	local srcdir="${T}/src"
+	mkdir -p "${srcdir}" || die
+	bazel-bin/tensorflow_estimator/tools/pip_package/build_pip_package --src "${srcdir}" || die
+}
+
+src_install() {
+	do_install() {
+		cd "${T}/src" || die
+		esetup.py install
+		python_optimize
+	}
+	python_foreach_impl do_install
+
+	cd "${S}" || die
+	einstalldocs
+}
diff --git a/sci-libs/tensorflow/Manifest b/sci-libs/tensorflow/Manifest
index 1c6da96bf42e..f231acbcc812 100644
--- a/sci-libs/tensorflow/Manifest
+++ b/sci-libs/tensorflow/Manifest
@@ -33,6 +33,7 @@ DIST tensorflow-1.10.0.tar.gz 24490786 BLAKE2B 2ecec19b2b2ebb2e292ec07fee458017a
 DIST tensorflow-1.11.0.tar.gz 25024790 BLAKE2B 74129fb1e6db0317fd45266dae7aa4fab811e1ebf0d093f3153684fa4465f4319cbf8fd50c6667f9c4ddbce5c100ee00151ec2873eca93ef7d5ebbc04ab6b965 SHA512 26e9542c43e11a663cbc5cf42859ae7b6dc0e92cfa88775fd4d1badba7f08c59b60c05010fd9f3ec501313be5c042f39b17323bb4753babf365ba2a48af836c2
 DIST tensorflow-1.12.0.tar.gz 26341737 BLAKE2B 6b9e21a9367ec7454916af327ae21fc6c46e54885f30823784985a61193654fd1942cbd3b5688f55cbd63f890417eac812d0cdb576d0f0b8677df92c259837c0 SHA512 b145a9118856aa00a829ab6af89bff4e1e131371c96d77b07532544112803c4574d97ef224b28a64437a2af8db4286786dc0b4123efe110b2aa734b443a7e238
 DIST tensorflow-1.13.0_rc0.tar.gz 31616223 BLAKE2B b4cb76cdb0e79639e8a1282835101d8a5e23a0e9d659dfbc01d8395528d05c434d0cc93df010086acbc338590d8ced3d95b4b00d6e1a7ebbe8d1df1f87265114 SHA512 0d8f88a8882ae1f69eee82fd54a836b3a0629c6a274af8ef329421445aeb446b651b90285c3ea19cb768860fd759e715dea481d5a07ec722ebd34323331e61dd
+DIST tensorflow-1.13.0_rc2.tar.gz 31616906 BLAKE2B 94e6ba8a56cad25e1c90950c75129d77bd6351dcd4e87721efb41cd560835ca7212d1f1a932c54c2f328756f92afe1fe299c48e9b520aea74bbb3b0928b0c356 SHA512 a0b5c961f56530cf5245d4f2f0d51642829dd348b811315eff533dae9f77d38e99f03ec0d61c40a20237758916a7173f4baf99a474717c1aefc111614f9171e0
 DIST tensorflow-patches-1.10.0.tar.bz2 4032 BLAKE2B 8588deec74179d8044af631de8e651491cc713553ee15ece9dff5052bd95b10924bdbe4301453f00d0f2fccd5d595d496b48fe45b0259837653b2de9e1898ab9 SHA512 1f57995ca9b3278735636cc42c88dc45558fa6a1d656108293f8df3fd9961d75f5e979bf0a9909136134e1cdaab41a34f83e605b48b23dddf17a6b1be684117b
 DIST tensorflow-patches-1.11.0.tar.bz2 11013 BLAKE2B 929cb9fee5e6b63f00341351908d3050c676670d9cc2c1241bd2e3c86601704a7495ab598b992718f0b51fc369e33e7c646bc5db3ba3b86b18326b1c2d2974a8 SHA512 76a94c9444e1d984afaf080222d430032636204d05a5e3ff5530012dfa1eba78619dd2a2942343ccc2f7fc489eb8c6f51fddd0b84cb2c2db645b2b914cc61f80
 DIST tensorflow-patches-1.12.0.tar.bz2 10638 BLAKE2B fc2c30f6b425390f5791df8ec409165aa4cc242eb93885845cc34e8302f781b267efaebf9e996f0cbc7558d975d742fb2e5509df9f06d85a370ea73795f92c49 SHA512 2b734e206eda58c898ad7090b3fe371b08c06dcb52d07fc0991548cec7e45c2500e797dd7b98b8a3a4416b85c8886314bd75921d0cd6d942a7cd15688954dd5d
@@ -42,4 +43,5 @@ EBUILD tensorflow-1.10.0.ebuild 13829 BLAKE2B dd99f463536047e6b5acaa9aa6341d367b
 EBUILD tensorflow-1.11.0.ebuild 13608 BLAKE2B ad8462cc4bc779dadde6093912940b368ba1e4abcf3996c4b570aa599d4970a5fe709d53152b4a6d35326610ae09e128fd6b674fc1176677ba60c9d3849f896d SHA512 696fd969e06a4f2390ad420d6e713a5f7b025034630593b7f8644509622fda1d766af1737ae5174dcccdff80592b5a0ae6d9f5a3ea94383c4e947688b26e8daa
 EBUILD tensorflow-1.12.0.ebuild 9185 BLAKE2B a2a7089074ea57d13667c205623b512aa95223c9aec0108080aa26b5cba94ce327d38710e84b60e8727a92c450ccac545d230954f3dc93a5d43bf15ab007f944 SHA512 2fea55fdb5df02ef984423ec6b1f1c9708a61edc60e282c6ac704bd296cb8eb78d124988bc30ccb598fcff3c22ab8d1103c1834b8983ba8f6a5b5c75139375c1
 EBUILD tensorflow-1.13.0_rc0.ebuild 9477 BLAKE2B 0b03827922faed2c7df018dc0e20ecaa19aa06d4068a7dbe1595e62a1eaf1c31a6e9ec24587cdab0bf2bb669d2fdd30dad5ace9602e39f6d3e25702df234faca SHA512 493c62b3b31a78e22171b60e936b9c6ff965e74c2c834b1c6f6b22a492cd993db910f1f1537b438f09bbf8f784291a2551eb142656d51813957335f33e05efbe
+EBUILD tensorflow-1.13.0_rc2.ebuild 9474 BLAKE2B 69c319821d5dc45b033380e03e199f0212ccf6438d2bb1ff8cf058c7551916a8764e49b04bf6c4012d002d20df78784d8944e242b28c9383c124979628e322d1 SHA512 5b7733ddfd2bd0bb0210cf075b2fe83286c79154081f57f7653dc7539d95dafc9b13da29a78b4d9763de2c5995b0b5e0e01d3e872bfb342047f52a18b847b13a
 MISC metadata.xml 641 BLAKE2B 6e87fea81b3a1cdbd96bc190a2b39509549a6c3fe384597c394e142e20f0005329df309edf03d7c304e8adb62876a33c8d0c54161e5fb09fbda1df7e9d774fe3 SHA512 42fe38c07d34999da7cf47b780e69b4fa65245763761a915bd35af3d4441f583f477fd84952680d736be8514a049f49ab1dad9a7d4a6963baff00f94f5efa308
diff --git a/sci-libs/tensorflow/tensorflow-1.13.0_rc2.ebuild b/sci-libs/tensorflow/tensorflow-1.13.0_rc2.ebuild
new file mode 100644
index 000000000000..2cc7e2078046
--- /dev/null
+++ b/sci-libs/tensorflow/tensorflow-1.13.0_rc2.ebuild
@@ -0,0 +1,311 @@
+# Copyright 1999-2019 Jason Zaman
+# Distributed under the terms of the GNU General Public License v2
+
+EAPI=7
+
+DISTUTILS_OPTIONAL=1
+PYTHON_COMPAT=( python2_7 python{3_5,3_6} )
+MY_PV=${PV/_rc/-rc}
+MY_P=${PN}-${MY_PV}
+
+inherit bazel check-reqs cuda distutils-r1 flag-o-matic toolchain-funcs
+
+DESCRIPTION="Computation framework using data flow graphs for scalable machine learning"
+HOMEPAGE="https://www.tensorflow.org/"
+
+LICENSE="Apache-2.0"
+SLOT="0"
+KEYWORDS="~amd64"
+IUSE="cuda mpi +python"
+CPU_USE_FLAGS_X86="sse sse2 sse3 sse4_1 sse4_2 avx avx2 fma3 fma4"
+for i in $CPU_USE_FLAGS_X86; do
+	IUSE+=" cpu_flags_x86_$i"
+done
+
+# distfiles that bazel uses for the workspace, will be copied to basel-distdir
+bazel_external_uris="
+	http://www.kurims.kyoto-u.ac.jp/~ooura/fft.tgz -> oourafft-20061228.tgz
+	https://bitbucket.org/eigen/eigen/get/9f48e814419e.tar.gz -> eigen-9f48e814419e.tar.gz
+	https://github.com/abseil/abseil-cpp/archive/389ec3f906f018661a5308458d623d01f96d7b23.tar.gz -> abseil-cpp-389ec3f906f018661a5308458d623d01f96d7b23.tar.gz
+	https://github.com/bazelbuild/rules_closure/archive/dbb96841cc0a5fb2664c37822803b06dab20c7d1.tar.gz -> bazelbuild-rules_closure-dbb96841cc0a5fb2664c37822803b06dab20c7d1.tar.gz
+	https://github.com/bazelbuild/rules_docker/archive/a9bb1dab84cdf46e34d1b34b53a17bda129b5eba.tar.gz -> rules_docker-a9bb1dab84cdf46e34d1b34b53a17bda129b5eba.tar.gz
+	https://github.com/google/double-conversion/archive/3992066a95b823efc8ccc1baf82a1cfc73f6e9b8.zip -> double-conversion-3992066a95b823efc8ccc1baf82a1cfc73f6e9b8.zip
+	https://github.com/google/farmhash/archive/816a4ae622e964763ca0862d9dbd19324a1eaf45.tar.gz -> farmhash-816a4ae622e964763ca0862d9dbd19324a1eaf45.tar.gz
+	https://github.com/google/gemmlowp/archive/38ebac7b059e84692f53e5938f97a9943c120d98.zip -> gemmlowp-38ebac7b059e84692f53e5938f97a9943c120d98.zip
+	https://github.com/google/highwayhash/archive/fd3d9af80465e4383162e4a7c5e2f406e82dd968.tar.gz -> highwayhash-fd3d9af80465e4383162e4a7c5e2f406e82dd968.tar.gz
+	https://github.com/nlopezgi/bazel-toolchains/archive/3f8c58fe530fedc446de04673bc1e32985887dea.tar.gz -> bazel-toolchains-3f8c58fe530fedc446de04673bc1e32985887dea.tar.gz
+	cuda? (
+		https://github.com/nvidia/nccl/archive/f93fe9bfd94884cec2ba711897222e0df5569a53.tar.gz -> nvidia-nccl-f93fe9bfd94884cec2ba711897222e0df5569a53.tar.gz
+		https://github.com/NVlabs/cub/archive/1.8.0.zip -> cub-1.8.0.zip
+	)
+	python? (
+		https://github.com/intel/ARM_NEON_2_x86_SSE/archive/1200fe90bb174a6224a525ee60148671a786a71f.tar.gz -> ARM_NEON_2_x86_SSE-1200fe90bb174a6224a525ee60148671a786a71f.tar.gz
+		https://mirror.bazel.build/docs.python.org/2.7/_sources/license.rst.txt -> tensorflow-python-license.rst.txt
+		https://pypi.python.org/packages/bc/cc/3cdb0a02e7e96f6c70bd971bc8a90b8463fda83e264fa9c5c1c98ceabd81/backports.weakref-1.0rc1.tar.gz
+	)"
+
+SRC_URI="https://github.com/${PN}/${PN}/archive/v${MY_PV}.tar.gz -> ${P}.tar.gz
+		${bazel_external_uris}"
+
+RDEPEND="
+	app-arch/snappy
+	dev-db/lmdb
+	dev-db/sqlite
+	dev-libs/icu
+	>=dev-libs/jsoncpp-1.8.4
+	dev-libs/libpcre
+	dev-libs/nsync
+	dev-libs/openssl:0=
+	>=dev-libs/protobuf-3.6.0
+	>=dev-libs/re2-0.2018.04.01
+	media-libs/giflib
+	media-libs/libjpeg-turbo
+	media-libs/libpng:0
+	>=net-libs/grpc-1.16.0
+	net-misc/curl
+	sys-libs/zlib
+	cuda? (
+		>=dev-util/nvidia-cuda-toolkit-8.0[profiler]
+		>=dev-libs/cudnn-6.0
+	)
+	mpi? ( virtual/mpi )
+	python? (
+		${PYTHON_DEPS}
+		>=dev-libs/flatbuffers-1.8.0
+		dev-python/absl-py[${PYTHON_USEDEP}]
+		>=dev-python/astor-0.7.1[${PYTHON_USEDEP}]
+		dev-python/gast[${PYTHON_USEDEP}]
+		dev-python/numpy[${PYTHON_USEDEP}]
+		dev-python/google-pasta[${PYTHON_USEDEP}]
+		>=dev-python/protobuf-python-3.6.0[${PYTHON_USEDEP}]
+		dev-python/six[${PYTHON_USEDEP}]
+		dev-python/termcolor[${PYTHON_USEDEP}]
+		dev-python/grpcio[${PYTHON_USEDEP}]
+		net-libs/google-cloud-cpp
+		>=sci-libs/keras-applications-1.0.6[${PYTHON_USEDEP}]
+		>=sci-libs/keras-preprocessing-1.0.5[${PYTHON_USEDEP}]
+		>=sci-libs/tensorflow-estimator-1.13.0_rc0[${PYTHON_USEDEP}]
+		>=sci-visualization/tensorboard-1.12.0[${PYTHON_USEDEP}]
+		virtual/python-enum34[${PYTHON_USEDEP}]
+	)"
+DEPEND="${RDEPEND}
+	dev-python/mock"
+BDEPEND="
+	app-arch/unzip
+	>=dev-libs/protobuf-3.6.0
+	dev-java/java-config
+	dev-python/mock
+	dev-lang/swig
+	dev-python/cython
+	cuda? (
+		>=dev-util/nvidia-cuda-toolkit-8.0[profiler]
+	)
+	!python? ( dev-lang/python )
+	python? (
+		dev-python/grpcio-tools
+	)"
+REQUIRED_USE="python? ( ${PYTHON_REQUIRED_USE} )"
+
+S="${WORKDIR}/${MY_P}"
+
+DOCS=( AUTHORS CONTRIBUTING.md ISSUE_TEMPLATE.md README.md RELEASE.md )
+CHECKREQS_MEMORY="5G"
+CHECKREQS_DISK_BUILD="5G"
+
+get-cpu-flags() {
+	local i f=()
+	# Keep this list in sync with tensorflow/core/platform/cpu_feature_guard.cc.
+	for i in sse sse2 sse3 sse4_1 sse4_2 avx avx2 fma4; do
+		use cpu_flags_x86_${i} && f+=( -m${i/_/.} )
+	done
+	use cpu_flags_x86_fma3 && f+=( -mfma )
+	echo "${f[*]}"
+}
+
+pkg_setup() {
+	check-reqs_pkg_setup
+}
+
+src_unpack() {
+	# Only unpack the main distfile
+	unpack "${P}.tar.gz"
+	bazel_load_distfiles "${bazel_external_uris}"
+}
+
+src_prepare() {
+	export JAVA_HOME=$(java-config --jre-home) # so keepwork works
+
+	append-flags $(get-cpu-flags)
+	bazel_setup_bazelrc
+
+	default
+	use python && python_copy_sources
+
+	use cuda && cuda_add_sandbox
+}
+
+src_configure() {
+	export JAVA_HOME=$(java-config --jre-home) # so keepwork works
+
+	do_configure() {
+		export CC_OPT_FLAGS=" "
+		export TF_ENABLE_XLA=0
+		export TF_NEED_OPENCL_SYCL=0
+		export TF_NEED_OPENCL=0
+		export TF_NEED_COMPUTECPP=0
+		export TF_NEED_ROCM=0
+		export TF_NEED_MPI=$(usex mpi 1 0)
+		export TF_SET_ANDROID_WORKSPACE=0
+
+		if use python; then
+			python_export PYTHON_SITEDIR
+			export PYTHON_BIN_PATH="${PYTHON}"
+			export PYTHON_LIB_PATH="${PYTHON_SITEDIR}"
+		else
+			export PYTHON_BIN_PATH="$(which python)"
+			export PYTHON_LIB_PATH="$(python -c 'from distutils.sysconfig import *; print(get_python_lib())')"
+		fi
+
+		export TF_NEED_CUDA=$(usex cuda 1 0)
+		export TF_DOWNLOAD_CLANG=0
+		export TF_CUDA_CLANG=0
+		export TF_NEED_TENSORRT=0
+		if use cuda; then
+			export CUDA_TOOLKIT_PATH="${EPREFIX%/}/opt/cuda"
+			export CUDNN_INSTALL_PATH="${EPREFIX%/}/opt/cuda"
+			export GCC_HOST_COMPILER_PATH="$(cuda_gccdir)/$(tc-getCC)"
+			export TF_NCCL_VERSION="1"
+			export TF_CUDA_VERSION="$(cuda_toolkit_version)"
+			export TF_CUDNN_VERSION="$(cuda_cudnn_version)"
+			einfo "Setting CUDA version: $TF_CUDA_VERSION"
+			einfo "Setting CUDNN version: $TF_CUDNN_VERSION"
+		fi
+
+		local SYSLIBS=(
+			absl_py
+			astor_archive
+			boringssl
+			com_github_googleapis_googleapis
+			com_github_googlecloudplatform_google_cloud_cpp
+			com_google_protobuf
+			com_google_protobuf_cc
+			com_googlesource_code_re2
+			curl
+			cython
+			flatbuffers
+			gast_archive
+			gif_archive
+			grpc
+			icu
+			jpeg
+			jsoncpp_git
+			keras_applications_archive
+			lmdb
+			nasm
+			nsync
+			org_sqlite
+			pcre
+			png_archive
+			protobuf_archive
+			six_archive
+			snappy
+			swig
+			termcolor_archive
+			zlib_archive
+		)
+
+		export TF_SYSTEM_LIBS="${SYSLIBS[@]}"
+		export TF_IGNORE_MAX_BAZEL_VERSION=1
+
+		# This is not autoconf
+		./configure || die
+
+		echo 'build --config=noaws --config=nohdfs --config=noignite --config=nokafka' >> .bazelrc || die
+	}
+	if use python; then
+		python_foreach_impl run_in_build_dir do_configure
+	else
+		do_configure
+	fi
+}
+
+src_compile() {
+	export JAVA_HOME=$(java-config --jre-home) # so keepwork works
+
+	if use python; then
+		python_setup
+		BUILD_DIR="${S}-${EPYTHON/./_}"
+		cd "${BUILD_DIR}"
+	fi
+
+	# fail early if any deps are missing
+	ebazel build --nobuild \
+		//tensorflow:libtensorflow_framework.so \
+		//tensorflow:libtensorflow.so \
+		//tensorflow:libtensorflow_cc.so \
+		$(usex python '//tensorflow/tools/pip_package:build_pip_package' '')
+
+	ebazel build \
+		//tensorflow:libtensorflow_framework.so \
+		//tensorflow:libtensorflow.so
+	ebazel build //tensorflow:libtensorflow_cc.so
+
+	do_compile() {
+		ebazel build //tensorflow/tools/pip_package:build_pip_package
+	}
+	BUILD_DIR="${S}"
+	cd "${BUILD_DIR}"
+	use python && python_foreach_impl run_in_build_dir do_compile
+	ebazel shutdown
+}
+
+src_install() {
+	local i j
+	export JAVA_HOME=$(java-config --jre-home) # so keepwork works
+
+	do_install() {
+		einfo "Installing ${EPYTHON} files"
+		local srcdir="${T}/src-${MULTIBUILD_VARIANT}"
+		mkdir -p "${srcdir}" || die
+		bazel-bin/tensorflow/tools/pip_package/build_pip_package --src "${srcdir}" || die
+		cd "${srcdir}" || die
+		esetup.py install
+
+		# libtensorflow_framework.so is in /usr/lib already
+		python_export PYTHON_SITEDIR PYTHON_SCRIPTDIR
+		rm -f "${D}/${PYTHON_SITEDIR}/${PN}/lib${PN}_framework.so" || die
+		python_optimize
+	}
+
+	if use python; then
+		python_foreach_impl run_in_build_dir do_install
+
+		# Symlink to python-exec scripts
+		for i in "${ED}"/usr/lib/python-exec/*/*; do
+			n="${i##*/}"
+			[[ -e "${ED}/usr/bin/${n}" ]] || dosym ../lib/python-exec/python-exec2 "/usr/bin/${n}"
+		done
+
+		python_setup
+		local BUILD_DIR="${S}-${EPYTHON/./_}"
+		cd "${BUILD_DIR}" || die
+	fi
+
+	einfo "Installing headers"
+	ebazel build //tensorflow:install_headers
+	ebazel shutdown
+	insinto /usr/include/${PN}/
+	doins -r bazel-genfiles/tensorflow/include/*
+
+	einfo "Installing libs"
+	# Generate pkg-config file
+	${PN}/c/generate-pc.sh --prefix="${EPREFIX}"/usr --libdir=$(get_libdir) --version=${MY_PV} || die
+	insinto /usr/$(get_libdir)/pkgconfig
+	doins ${PN}.pc
+
+	dolib.so bazel-bin/tensorflow/lib${PN}_framework.so
+	dolib.so bazel-bin/tensorflow/lib${PN}.so
+	dolib.so bazel-bin/tensorflow/lib${PN}_cc.so
+
+	einstalldocs
+}