gentoo resync : 18.08.2019

3 files changed, 262 insertions, 0 deletions

diff --git a/sci-libs/trilinos/Manifest b/sci-libs/trilinos/Manifest
new file mode 100644
index 000000000000..6bfeaa2d8a53
--- /dev/null
+++ b/sci-libs/trilinos/Manifest
@@ -0,0 +1,4 @@
+DIST trilinos-12.14.1-patches-r0.tar.xz 6448 BLAKE2B f852a4612c400ddfb6dcecb476e0b9b2cd0f38ac9cd74fd09fc1f99ccb2588a4703f8c8514689c81d23aa218aff3cdcbe9b5205becea8936723d6e339705d54d SHA512 206bd08f0a5b7f7107e60c9e9c1a15fa7e74916bacb5399cccdd936b426768834ff24424ea77e8d1706afa98d88bb5a098b3b0203039024a3b5f5388c4a9735b
+DIST trilinos-12.14.1.tar.gz 129036436 BLAKE2B e7401df2ff8408a7af4a8e90d93b1929df65228c4f5cf3c754d20ebdfa8f3835800f540e87c1198e0baf2fefe0920618ae497f59373720754ab0c9dc1da93136 SHA512 dfff0e0582cb5ad12614dd53e9635572c8d1ee86d96f432f5a6e046af63edb13f6bfa3037204ab89fbb0d27e9be9bd9661d47efb41ab2a6e421bca5eba6b6a87
+EBUILD trilinos-12.14.1.ebuild 6148 BLAKE2B d8ef14be03e34742e59292426af03336fb3997f3e50b02e0d6a9d6114a5d67c7d3530e93f44e645e247f395343b1a3045383714f8408a41a0434cf125f6006c5 SHA512 b96f197cfd8435366940237eba40dd8cd48e950e6c814ebcb18b6c04125f374d4475cecaea3c25a2ec60b3685e3db2d52ac025a9f6031111c67039cfa00be2d8
+MISC metadata.xml 2778 BLAKE2B 45cb2a647a1730c9b6b21271364b5f4acaf145f6ae33db356d0b9be7584705c29a645d3f96abfe0a9b87540ae55ab586ec202191776f4472b66291c274b9f24b SHA512 c58e98197353efe1c6fef038dd53d4a938e85aa66fc53f00cab0133d8ee89c629eead55c270c88583778b193f0a85b498c7235fc3f1e8f45a1abfff2d5f0cbec
diff --git a/sci-libs/trilinos/metadata.xml b/sci-libs/trilinos/metadata.xml
new file mode 100644
index 000000000000..8cbeddb082eb
--- /dev/null
+++ b/sci-libs/trilinos/metadata.xml
@@ -0,0 +1,47 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
+<pkgmetadata>
+	<maintainer type="person">
+		<email>tamiko@gentoo.org</email>
+		<name>Matthias Maier</name>
+	</maintainer>
+	<maintainer type="project">
+		<email>sci@gentoo.org</email>
+		<name>Gentoo Science Project</name>
+	</maintainer>
+	<longdescription lang="en">
+The Trilinos Project is an effort to develop algorithms and enabling
+technologies within an object-oriented software framework for the solution
+of large-scale, complex multi-physics engineering and scientific problems.
+</longdescription>
+	<use>
+		<flag name="adolc">Add support for adolc (<pkg>sci-libs/adolc</pkg>)</flag>
+		<flag name="arprec">Add support for arprec (<pkg>sci-libs/arprec</pkg>)</flag>
+		<flag name="boost">Add support for boost (<pkg>dev-libs/boost</pkg>)</flag>
+		<flag name="clp">Add support for clp (<pkg>sci-libs/coinor-clp</pkg>)</flag>
+		<flag name="cuda">Add support for cuda (<pkg>dev-util/nvidia-cuda-toolkit</pkg>)</flag>
+		<flag name="eigen">Add support for eigen (<pkg>dev-cpp/eigen</pkg>)</flag>
+		<flag name="glpk">Add support for glpk (<pkg>sci-mathematics/glpk</pkg>)</flag>
+		<flag name="gtest">Add support for gtest (<pkg>dev-cpp/gtest</pkg>)</flag>
+		<flag name="hwloc">Add support for hwloc (<pkg>sys-apps/hwloc</pkg>)</flag>
+		<flag name="hdf5">Add support for hdf5 (<pkg>sci-libs/hdf5</pkg>)</flag>
+		<flag name="hypre">Add support for hypre (<pkg>sci-libs/hypre</pkg>)</flag>
+		<flag name="matio">Add support for matio (<pkg>sci-libs/matio</pkg>)</flag>
+		<flag name="metis">
+Add support for metis (<pkg>sci-libs/metis</pkg> or <pkg>sci-libs/parmetis</pkg>)
+</flag>
+		<flag name="mkl">Add support for mkl (<pkg>sci-libs/mkl</pkg>)</flag>
+		<flag name="mumps">Add support for mumps (<pkg>sci-libs/mumps</pkg>)</flag>
+		<flag name="netcdf">Add support for netcdf (<pkg>sci-libs/netcdf</pkg>)</flag>
+		<flag name="petsc">Add support for petsc (<pkg>sci-mathematics/petsc</pkg>)</flag>
+		<flag name="qd">Add support for qd (<pkg>sci-libs/qd</pkg>)</flag>
+		<flag name="scalapack">Add support for scalapack (<pkg>sci-libs/scalapack</pkg>)</flag>
+		<flag name="scotch">Add support for scotch (<pkg>sci-libs/scotch</pkg>)</flag>
+		<flag name="sparse">Add support for sparse matrix solvers (<pkg>sci-libs/umfpack</pkg>)</flag>
+		<flag name="superlu">Add support for superlu (<pkg>sci-libs/superlu</pkg>)</flag>
+		<flag name="taucs">Add support for taucs (<pkg>sci-libs/taucs</pkg>)</flag>
+		<flag name="tbb">Add support for threading building blocks library (<pkg>dev-cpp/tbb</pkg>)</flag>
+		<flag name="tvmet">Add support for tvmet (<pkg>dev-libs/tvmet</pkg>)</flag>
+		<flag name="yaml">Add support for yaml (<pkg>dev-cpp/yaml-cpp</pkg>)</flag>
+	</use>
+</pkgmetadata>
diff --git a/sci-libs/trilinos/trilinos-12.14.1.ebuild b/sci-libs/trilinos/trilinos-12.14.1.ebuild
new file mode 100644
index 000000000000..affe878ba6ec
--- /dev/null
+++ b/sci-libs/trilinos/trilinos-12.14.1.ebuild
@@ -0,0 +1,211 @@
+# Copyright 1999-2019 Gentoo Authors
+# Distributed under the terms of the GNU General Public License v2
+
+EAPI=7
+CMAKE_MAKEFILE_GENERATOR=emake
+
+inherit cmake-utils toolchain-funcs multilib toolchain-funcs
+
+DESCRIPTION="Scientific library collection for large scale problems"
+HOMEPAGE="http://trilinos.sandia.gov/"
+MY_PV="${PV//\./-}"
+PATCHSET="r0"
+SRC_URI="https://github.com/${PN}/Trilinos/archive/${PN}-release-${MY_PV}.tar.gz -> ${P}.tar.gz
+	https://dev.gentoo.org/~tamiko/distfiles/${P}-patches-${PATCHSET}.tar.xz"
+
+KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux"
+
+LICENSE="BSD LGPL-2.1"
+SLOT="0"
+
+IUSE="
+	adolc arprec boost clp cuda eigen glpk gtest hdf5 hwloc hypre
+	matio metis mkl mumps netcdf petsc qd scalapack scotch sparse
+	superlu taucs tbb test threads tvmet yaml zlib X
+"
+
+# TODO: fix export cmake function for tests
+RESTRICT="test"
+
+RDEPEND="
+	sys-libs/binutils-libs
+	virtual/blas
+	virtual/lapack
+	virtual/mpi
+	adolc? ( sci-libs/adolc )
+	arprec? ( sci-libs/arprec )
+	boost? ( dev-libs/boost )
+	clp? ( sci-libs/coinor-clp )
+	cuda? ( >=dev-util/nvidia-cuda-toolkit-3.2 )
+	eigen? ( dev-cpp/eigen:3 )
+	glpk? ( sci-mathematics/glpk )
+	gtest? ( dev-cpp/gtest )
+	hdf5? ( sci-libs/hdf5[mpi] )
+	hypre? ( sci-libs/hypre )
+	hwloc? ( sys-apps/hwloc )
+	matio? ( sci-libs/matio )
+	mkl? ( sci-libs/mkl )
+	metis? ( || ( sci-libs/parmetis sci-libs/metis ) )
+	mumps? ( sci-libs/mumps )
+	netcdf? ( sci-libs/netcdf )
+	petsc? ( sci-mathematics/petsc )
+	qd? ( sci-libs/qd )
+	scalapack? ( sci-libs/scalapack )
+	scotch? ( sci-libs/scotch )
+	sparse? ( sci-libs/cxsparse sci-libs/umfpack )
+	superlu? ( sci-libs/superlu )
+	taucs? ( sci-libs/taucs )
+	tbb? ( dev-cpp/tbb )
+	tvmet? ( dev-libs/tvmet )
+	yaml? ( dev-cpp/yaml-cpp )
+	zlib? ( sys-libs/zlib )
+	X? ( x11-libs/libX11 )"
+DEPEND="${RDEPEND}
+	virtual/pkgconfig"
+
+S="${WORKDIR}/Trilinos-${PN}-release-${MY_PV}"
+
+PATCHES=(
+	"${WORKDIR}"/patches
+)
+
+trilinos_conf() {
+	local dirs libs d
+	for d in $($(tc-getPKG_CONFIG) --libs-only-L $1); do
+		dirs="${dirs};${d:2}"
+	done
+	[[ -n ${dirs} ]] && mycmakeargs+=( "-D${2}_LIBRARY_DIRS=${dirs:1}" )
+	for d in $($(tc-getPKG_CONFIG) --libs-only-l $1); do
+		libs="${libs};${d:2}"
+	done
+	[[ -n ${libs} ]] && mycmakeargs+=( "-D${2}_LIBRARY_NAMES=${libs:1}" )
+	dirs=""
+	for d in $($(tc-getPKG_CONFIG) --cflags-only-I $1); do
+		dirs="${dirs};${d:2}"
+	done
+	[[ -n ${dirs} ]] && mycmakeargs+=( "-D${2}_INCLUDE_DIRS=${dirs:1}" )
+}
+
+src_configure() {
+	local mycmakeargs=(
+		-DBUILD_SHARED_LIBS=ON
+		-DCMAKE_INSTALL_PREFIX="${EPREFIX}"
+		-DCMAKE_SKIP_INSTALL_RPATH=ON
+		-DTrilinos_INSTALL_CONFIG_DIR="${EPREFIX}/usr/$(get_libdir)/cmake"
+		-DTrilinos_INSTALL_INCLUDE_DIR="${EPREFIX}/usr/include/trilinos"
+		-DTrilinos_INSTALL_LIB_DIR="${EPREFIX}/usr/$(get_libdir)/trilinos"
+		-DTrilinos_ENABLE_ALL_PACKAGES=ON
+		-DTrilinos_ENABLE_PyTrilinos=OFF
+		-DTrilinos_ENABLE_SEACASChaco=OFF
+		-DTrilinos_ENABLE_SEACASExodiff="$(usex netcdf)"
+		-DTrilinos_ENABLE_SEACASExodus="$(usex netcdf)"
+		-DTrilinos_ENABLE_TESTS="$(usex test)"
+		-DZoltan2_ENABLE_Experimental=ON
+		-DTPL_ENABLE_BinUtils=ON
+		-DTPL_ENABLE_BLAS=ON
+		-DTPL_ENABLE_LAPACK=ON
+		-DTPL_ENABLE_MPI=ON
+		-DTPL_ENABLE_ADOLC="$(usex adolc)"
+		-DTPL_ENABLE_AMD="$(usex sparse)"
+		-DTPL_ENABLE_ARPREC="$(usex arprec)"
+		-DTPL_ENABLE_BLACS="$(usex scalapack)"
+		-DTPL_ENABLE_BoostLib="$(usex boost)"
+		-DTPL_ENABLE_Boost="$(usex boost)"
+		-DTPL_ENABLE_Clp="$(usex clp)"
+		-DTPL_ENABLE_CSparse="$(usex sparse)"
+		-DTPL_ENABLE_CUDA="$(usex cuda)"
+		-DTPL_ENABLE_CUSPARSE="$(usex cuda)"
+		-DTPL_ENABLE_Eigen="$(usex eigen)"
+		-DTPL_ENABLE_GLPK="$(usex glpk)"
+		-DTPL_ENABLE_gtest="$(usex gtest)"
+		-DTPL_ENABLE_HDF5="$(usex hdf5)"
+		-DTPL_ENABLE_HWLOC="$(usex hwloc)"
+		-DTPL_ENABLE_HYPRE="$(usex hypre)"
+		-DTPL_ENABLE_Matio="$(usex matio)"
+		-DTPL_ENABLE_METIS="$(usex metis)"
+		-DTPL_ENABLE_MKL="$(usex mkl)"
+		-DTPL_ENABLE_MUMPS="$(usex mumps)"
+		-DTPL_ENABLE_Netcdf="$(usex netcdf)"
+		-DTPL_ENABLE_PARDISO_MKL="$(usex mkl)"
+		-DTPL_ENABLE_PETSC="$(usex petsc)"
+		-DTPL_ENABLE_Pthread="$(usex threads)"
+		-DTPL_ENABLE_QD="$(usex qd)"
+		-DTPL_ENABLE_SCALAPACK="$(usex scalapack)"
+		-DTPL_ENABLE_Scotch="$(usex scotch)"
+		-DTPL_ENABLE_SuperLU="$(usex superlu)"
+		-DTPL_ENABLE_TAUCS="$(usex taucs)"
+		-DTPL_ENABLE_TBB="$(usex tbb)"
+		-DTPL_ENABLE_Thrust="$(usex cuda)"
+		-DTPL_ENABLE_TVMET="$(usex tvmet)"
+		-DTPL_ENABLE_UMFPACK="$(usex sparse)"
+		-DTPL_ENABLE_X11="$(usex X)"
+		-DTPL_ENABLE_yaml-cpp="$(usex yaml)"
+		-DTPL_ENABLE_Zlib="$(usex zlib)"
+		-DML_ENABLE_SuperLU:BOOL=OFF
+	)
+
+	use eigen && \
+		mycmakeargs+=(
+		-DEigen_INCLUDE_DIRS="${EPREFIX}/usr/include/eigen3"
+	)
+	use hypre && \
+		mycmakeargs+=(
+		-DHYPRE_INCLUDE_DIRS="${EPREFIX}/usr/include/hypre"
+	)
+	use scotch && \
+		mycmakeargs+=(
+		-DScotch_INCLUDE_DIRS="${EPREFIX}/usr/include/scotch"
+	)
+
+	# cxsparse is a rewrite of csparse + extras
+	use sparse && \
+		mycmakeargs+=(
+		-DCSparse_LIBRARY_NAMES="cxsparse"
+	)
+
+	# mandatory blas and lapack
+	trilinos_conf blas BLAS
+	trilinos_conf lapack LAPACK
+	use superlu && trilinos_conf superlu SuperLU
+	use metis && trilinos_conf metis METIS
+
+	# blacs library is included in scalapack these days
+	if use scalapack; then
+		trilinos_conf scalapack SCALAPACK
+		mycmakeargs+=(
+			-DBLACS_LIBRARY_NAMES="scalapack"
+			-DBLACS_INCLUDE_DIRS="${EPREFIX}/usr/include/blacs"
+		)
+	fi
+
+	#
+	# Make sure we use the compiler wrappers in order to build trilinos.
+	#
+	export CC=mpicc CXX=mpicxx && tc-export CC CXX
+
+	#
+	# cmake-utils eclass patches the base directory CMakeLists.txt
+	# which does not work for complex Trilinos CMake modules
+	#
+	CMAKE_BUILD_TYPE=RELEASE cmake-utils_src_configure
+}
+
+src_install() {
+	cmake-utils_src_install
+
+	# Clean up the mess:
+	mv "${ED}"/bin "${ED}/usr/$(get_libdir)"/trilinos || die "mv failed"
+	if [ -f "${ED}"/lib/exodus.py ]; then
+		mv "${ED}"/lib/exodus.py "${ED}/usr/$(get_libdir)"/trilinos || die "mv failed"
+	fi
+
+	#
+	# register $(get_libdir)/trilinos in LDPATH so that the dynamic linker
+	# has a chance to pick up the libraries...
+	#
+	cat >> "${T}"/99trilinos <<- EOF
+	LDPATH="${EPREFIX}/usr/$(get_libdir)/trilinos"
+	PATH="${EPREFIX}/usr/$(get_libdir)/trilinos/bin"
+	EOF
+	doenvd "${T}"/99trilinos
+}