reinit the tree, so we can have metadata

3 files changed, 73 insertions, 0 deletions

diff --git a/sci-libs/scipy/files/scipy-0.12.0-blitz.patch b/sci-libs/scipy/files/scipy-0.12.0-blitz.patch
new file mode 100644
index 000000000000..2817aa39b871
--- /dev/null
+++ b/sci-libs/scipy/files/scipy-0.12.0-blitz.patch
@@ -0,0 +1,28 @@
+Description: Fixes scipy.weave.inline compalition with g++ 4.3 and upwards
+Author: Sameer Morar <smorar@gmail.com>
+Forwarded: http://projects.scipy.org/scipy/scipy/ticket/739
+Bug-Debian: http://bugs.debian.org/598520
+Bug-Ubuntu: https://launchpad.net/bugs/302649
+
+--- a/scipy/weave/blitz/blitz/blitz.h
++++ b/scipy/weave/blitz/blitz/blitz.h
+@@ -65,6 +65,8 @@
+ 
+ #define BZ_THROW                     // Needed in <blitz/numinquire.h>
+ 
++#include <cstdlib>
++
+ BZ_NAMESPACE(blitz)
+ 
+ #ifdef BZ_HAVE_STD
+--- a/scipy/weave/blitz/blitz/prettyprint.h
++++ b/scipy/weave/blitz/blitz/prettyprint.h
+@@ -22,6 +22,8 @@
+ #ifndef BZ_PRETTYPRINT_H
+ #define BZ_PRETTYPRINT_H
+ 
++#include <cstdlib>
++
+ BZ_NAMESPACE(blitz)
+ 
+ class prettyPrintFormat {
diff --git a/sci-libs/scipy/files/scipy-0.12.0-restore-sys-argv.patch b/sci-libs/scipy/files/scipy-0.12.0-restore-sys-argv.patch
new file mode 100644
index 000000000000..3eef739f93a8
--- /dev/null
+++ b/sci-libs/scipy/files/scipy-0.12.0-restore-sys-argv.patch
@@ -0,0 +1,15 @@
+Description: restore sys.argv in case of exception
+Bug-Debian: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=500814
+
+--- a/scipy/weave/build_tools.py
++++ b/scipy/weave/build_tools.py
+@@ -283,6 +283,9 @@ def build_extension(module_path,compiler
+         configure_python_path(build_dir)
+     except SyntaxError: #TypeError:
+         success = 0
++    except Exception, e:
++        restore_sys_argv()
++        raise e
+ 
+     # restore argv after our trick...
+     restore_sys_argv()
diff --git a/sci-libs/scipy/files/scipy-0.16.1-glibc-2.22-backport.patch b/sci-libs/scipy/files/scipy-0.16.1-glibc-2.22-backport.patch
new file mode 100644
index 000000000000..791d67f32531
--- /dev/null
+++ b/sci-libs/scipy/files/scipy-0.16.1-glibc-2.22-backport.patch
@@ -0,0 +1,30 @@
+From 1f5ccd5447ed2796bb8e9506cfbfdb4a82cccfc0 Mon Sep 17 00:00:00 2001
+From: Ralf Gommers <ralf.gommers@gmail.com>
+Date: Sat, 24 Oct 2015 18:17:04 +0200
+Subject: [PATCH] TST: fix issue with a ctypes test for integrate on Fedora. 
+ Closes gh-5370
+
+---
+ scipy/integrate/tests/test_quadpack.py | 9 ++++++++-
+ 1 file changed, 8 insertions(+), 1 deletion(-)
+
+diff --git a/scipy/integrate/tests/test_quadpack.py b/scipy/integrate/tests/test_quadpack.py
+index c3a417c..f384c77 100644
+--- a/scipy/integrate/tests/test_quadpack.py
++++ b/scipy/integrate/tests/test_quadpack.py
+@@ -42,7 +42,14 @@ def setUp(self):
+             file = 'libm.dylib'
+         else:
+             file = 'libm.so'
+-        self.lib = ctypes.CDLL(file)
++
++        try:
++            self.lib = ctypes.CDLL(file)
++        except OSError:
++            # This test doesn't work on some Linux platforms (Fedora for
++            # example) that put an ld script in libm.so - see gh-5370
++            self.skipTest("Ctypes can't import libm.so")
++
+         restype = ctypes.c_double
+         argtypes = (ctypes.c_double,)
+         for name in ['sin', 'cos', 'tan']: