gentoo resync : 19.03.2019

4 files changed, 3 insertions, 344 deletions

diff --git a/sci-libs/parmetis/Manifest b/sci-libs/parmetis/Manifest
index ba9de7da7493..82790b283ba6 100644
--- a/sci-libs/parmetis/Manifest
+++ b/sci-libs/parmetis/Manifest
@@ -1,7 +1,4 @@
-AUX parmetis-3.1.1-autotools.patch 10971 BLAKE2B 52263cfef545a91590635d0d7e4b11766c38d2ffc77ccdc9358c3f1da84384adce155eed356e2bb66a11b92a25f5270a43b3846bca159e0a17c9ebc0258d1836 SHA512 4e0de7697391da0a49b7051f8f58d83ce4865a1cfc63dd0f6cb2085224385b2c951d0f9297f7e291a225b91ab7053a10a38f36ad369c81e2100d3298ed7b9a15
-DIST ParMetis-3.2.0.tar.gz 5291841 BLAKE2B f18b5144f2814a83c3a0b945b1bdbad812cce204e61e762498a98f380d33d79bdb6a4c58f25ebbd44401c7f76edbac602899d4fe8c05ca92f22a91d98f8f7607 SHA512 be7e5affa6ed687c7e8cbef51c5f4838e6302aa7632796f337ed079f15361569d77aa73fc61b876b5c9973e974575571fd1e3e6c73505480b1ecdb7cf801a0d0
 DIST metis-5.1.0.tar.gz 4984968 BLAKE2B c5f8ff552fce7e7cc02740e6197c9deb5e05e8bc2e2e56cad0cba85705eec6990b511182930c8758fd16a18015f54c8a4827038039bc3c58ee41df468ea175bc SHA512 deea47749d13bd06fbeaf98a53c6c0b61603ddc17a43dae81d72c8015576f6495fd83c11b0ef68d024879ed5415c14ebdbd87ce49c181bdac680573bea8bdb25
 DIST parmetis-4.0.3.tar.gz 5567670 BLAKE2B 69a44ea8e50d8fd78046a342807b994220d03da3ab1695533d92772b1840302917a7d5d6f9eb020d9ff8ab7e5372bff0386d6354b662f58495b74f8f596c45f9 SHA512 454a91921ca35c981df11c9846a11963ff8fd8407a25179453af33f8fe69493f6dd7f2a0b8feed9a7d3f121e45b715749dd7a94873eaac2bae4cad1e535ca132
-EBUILD parmetis-3.2.0.ebuild 867 BLAKE2B 98b33fe947e2c2b596d698d6923c18c7a22c144261d1a1ac2132af047be7366a18932e4e40d2e2a513000e0b895127623be456eaaa4b40da8ef56d7e00643c8d SHA512 d7d4ba4be5f372187796ac6c6d9c80a342b54bb7a01034d84676eca9cff2e88f4cda9c4b6170560faa342038b94616a9444690fa13472372cca48c964feaa0ef
-EBUILD parmetis-4.0.3.ebuild 4083 BLAKE2B a26a6988ac29f6e6107626141a377cb732cafb3b17aa6ac8840f8ae1cf604b6009f89f495c3833f7e7ef3cdb3cbb00645b7860463ced3b46d38f5dd5a4c86633 SHA512 902ca8d5d974ebded7aacaaf5d9d099eb42078b4c3e601a4b250c5fa5689caea6a213bab75abdb0b691c6d42026123f81e9046575fef4e877ccbb99ca71f3e80
+EBUILD parmetis-4.0.3.ebuild 4081 BLAKE2B 47034c2028fea0e7af01c6ca710994686ea79eb9daa902b9c4fc90bb0f67aef3cb820161e89753073beb53cbaed9f1cadba8813929fac3523d3e0297cb5a9484 SHA512 bcba60dc0a2ad5ab4c537b9072b604258a14ad712f85d81f4fc55631b5162e15c29789b3e15054eb1a87b1d631c945a36e3184dda9016d5abdc8bf84bba85367
 MISC metadata.xml 851 BLAKE2B 8c8fc30f50378b05ae59ca1f829da71f2a5cf66dfab03f645ceed4379bc8edc176fb9e5d1f1f83bbb695519a9e14bfd7855e040f56070a344791eb70eed12721 SHA512 6309c02babe871cd0bdaf509caab79dd8b81face5f6f5a39a1473284dbae6859223ae4f65d61fcf08370bac29dfd0e174cb722fbeeaeb5c80d53b749c265c73a
diff --git a/sci-libs/parmetis/files/parmetis-3.1.1-autotools.patch b/sci-libs/parmetis/files/parmetis-3.1.1-autotools.patch
deleted file mode 100644
index d38a2f7575cf..000000000000
--- a/sci-libs/parmetis/files/parmetis-3.1.1-autotools.patch
+++ /dev/null
@@ -1,298 +0,0 @@
---- configure.ac	1970-01-01 01:00:00.000000000 +0100
-+++ configure.ac	2009-03-14 11:37:58.804041439 +0000
-@@ -0,0 +1,18 @@
-+# -*- Autoconf -*-
-+AC_PREREQ(2.59)
-+AC_INIT(parmetis, 3.1.1, karypis@cs.umn.edu)
-+AM_INIT_AUTOMAKE([foreign])
-+AC_CONFIG_HEADER([config.h])
-+AC_PROG_INSTALL
-+AC_PROG_LIBTOOL
-+AC_CHECK_LIB(m, sqrt)
-+sinclude(ax_mpi.m4)
-+AC_LANG_PUSH([C])
-+AX_MPI([], AC_MSG_ERROR([could not compile an mpi test program]))
-+AC_CONFIG_FILES([Makefile 
-+		 metis.pc
-+		 parmetis.pc
-+		 ParMETISLib/Makefile
-+		 METISLib/Makefile
-+		 Programs/Makefile])
-+AC_OUTPUT
---- Makefile.am	1970-01-01 01:00:00.000000000 +0100
-+++ Makefile.am	2009-03-14 11:37:15.700900498 +0000
-@@ -0,0 +1,5 @@
-+SUBDIRS = METISLib ParMETISLib Programs
-+EXTRA_DIST = CHANGES VERSION parmetis.pc.in metis.pc.in
-+include_HEADERS = parmetis.h
-+pkgconfigdir = $(libdir)/pkgconfig
-+pkgconfig_DATA = metis.pc parmetis.pc
---- METISLib/Makefile.am	1970-01-01 01:00:00.000000000 +0100
-+++ METISLib/Makefile.am	2009-03-14 11:37:15.700900498 +0000
-@@ -0,0 +1,18 @@
-+pkginclude_HEADERS = defs.h macros.h metis.h proto.h rename.h \
-+	stdheaders.h struct.h
-+pkgincludedir = $(includedir)/metis
-+
-+lib_LTLIBRARIES = libmetis.la
-+libmetis_la_SOURCES = \
-+	coarsen.c fm.c initpart.c match.c ccgraph.c \
-+	pmetis.c pqueue.c refine.c util.c timing.c debug.c \
-+	bucketsort.c graph.c stat.c kmetis.c kwayrefine.c \
-+	kwayfm.c balance.c ometis.c srefine.c sfm.c separator.c \
-+	mincover.c mmd.c mesh.c meshpart.c frename.c fortran.c \
-+	myqsort.c compress.c parmetis.c estmem.c \
-+	mpmetis.c mcoarsen.c mmatch.c minitpart.c mbalance.c \
-+	mutil.c mkmetis.c mkwayrefine.c mkwayfmh.c \
-+	mrefine2.c minitpart2.c mbalance2.c mfm2.c \
-+	kvmetis.c kwayvolrefine.c kwayvolfm.c subdomains.c \
-+	mfm.c memory.c mrefine.c checkgraph.c
-+libmetis_la_LDFLAGS = -no-undefined -version-info 4:1:0 
---- metis.pc.in	1970-01-01 01:00:00.000000000 +0100
-+++ metis.pc.in	2009-03-14 11:37:15.700900498 +0000
-@@ -0,0 +1,10 @@
-+prefix=@prefix@
-+exec_prefix=@exec_prefix@
-+libdir=@libdir@
-+includedir=@includedir@
-+
-+Name: METIS
-+Description: Software for unstructured graph partitioning
-+Version: @VERSION@
-+Libs: -L${libdir} -lmetis
-+Cflags: -I${includedir}/metis
---- ParMETISLib/Makefile.am	1970-01-01 01:00:00.000000000 +0100
-+++ ParMETISLib/Makefile.am	2009-03-14 11:57:08.006017954 +0000
-@@ -0,0 +1,21 @@
-+pkginclude_HEADERS = defs.h macros.h parmetislib.h proto.h \
-+	rename.h stdheaders.h struct.h
-+pkgincludedir = $(includedir)/parmetis
-+
-+lib_LTLIBRARIES = libparmetis.la
-+libparmetis_la_SOURCES = \
-+	comm.c util.c debug.c setup.c grsetup.c timer.c \
-+	node_refine.c initmsection.c order.c \
-+	xyzpart.c pspases.c frename.c \
-+	iintsort.c iidxsort.c ikeysort.c ikeyvalsort.c \
-+	kmetis.c gkmetis.c ometis.c \
-+	initpart.c match.c \
-+	kwayfm.c kwayrefine.c kwaybalance.c \
-+	remap.c stat.c fpqueue.c \
-+	ametis.c rmetis.c lmatch.c initbalance.c \
-+	mdiffusion.c diffutil.c wave.c \
-+	csrmatch.c redomylink.c balancemylink.c \
-+	selectq.c akwayfm.c serial.c move.c \
-+	mmetis.c mesh.c memory.c weird.c backcompat.c
-+libparmetis_la_LDFLAGS = -no-undefined -version-info 3:1:1
-+libparmetis_la_LIBADD = @MPILIBS@ $(top_builddir)/METISLib/libmetis.la
---- parmetis.pc.in	1970-01-01 01:00:00.000000000 +0100
-+++ parmetis.pc.in	2009-03-14 11:37:15.700900498 +0000
-@@ -0,0 +1,11 @@
-+prefix=@prefix@
-+exec_prefix=@exec_prefix@
-+libdir=@libdir@
-+includedir=@includedir@
-+
-+Name: ParMETIS
-+Description: Software for parallel (mpi) unstructured graph partitioning
-+Version: @VERSION@
-+Requires: metis
-+Libs: -L${libdir} -lparmetis
-+Cflags: -I${includedir}
---- Programs/Makefile.am	1970-01-01 01:00:00.000000000 +0100
-+++ Programs/Makefile.am	2009-03-14 11:37:15.700900498 +0000
-@@ -0,0 +1,13 @@
-+AM_CPPFLAGS = -I$(top_srcdir)/ParMETISLib
-+LDADD = $(top_builddir)/METISLib/libmetis.la \
-+	$(top_builddir)/ParMETISLib/libparmetis.la
-+
-+check_PROGRAMS = ptest mtest
-+ptest_SOURCES = ptest.c io.c adaptgraph.c
-+mtest_SOURCES = mtest.c io.c
-+
-+MPIRUN = mpirun -np 2
-+
-+check-local: $(check_PROGRAMS)
-+	$(MPIRUN) ptest ../Graphs/rotor.graph
-+	$(MPIRUN) mtest ../Graphs/bricks.hex3d 2
---- ax_mpi.m4	1970-01-01 01:00:00.000000000 +0100
-+++ ax_mpi.m4	2010-01-20 20:33:15.000000000 +0000
-@@ -0,0 +1,178 @@
-+# ===========================================================================
-+#             http://www.nongnu.org/autoconf-archive/ax_mpi.html
-+# ===========================================================================
-+#
-+# SYNOPSIS
-+#
-+#   AX_MPI([ACTION-IF-FOUND[, ACTION-IF-NOT-FOUND]])
-+#
-+# DESCRIPTION
-+#
-+#   This macro tries to find out how to compile programs that use MPI
-+#   (Message Passing Interface), a standard API for parallel process
-+#   communication (see http://www-unix.mcs.anl.gov/mpi/)
-+#
-+#   On success, it sets the MPICC, MPICXX, MPIF77, or MPIFC output variable
-+#   to the name of the MPI compiler, depending upon the current language.
-+#   (This may just be $CC/$CXX/$F77/$FC, but is more often something like
-+#   mpicc/mpiCC/mpif77/mpif90.) It also sets MPILIBS to any libraries that
-+#   are needed for linking MPI (e.g. -lmpi or -lfmpi, if a special
-+#   MPICC/MPICXX/MPIF77/MPIFC was not found).
-+#
-+#   If you want to compile everything with MPI, you should set:
-+#
-+#     CC="MPICC" #OR# CXX="MPICXX" #OR# F77="MPIF77" #OR# FC="MPIFC"
-+#     LIBS="$MPILIBS $LIBS"
-+#
-+#   NOTE: The above assumes that you will use $CC (or whatever) for linking
-+#   as well as for compiling. (This is the default for automake and most
-+#   Makefiles.)
-+#
-+#   The user can force a particular library/compiler by setting the
-+#   MPICC/MPICXX/MPIF77/MPIFC and/or MPILIBS environment variables.
-+#
-+#   ACTION-IF-FOUND is a list of shell commands to run if an MPI library is
-+#   found, and ACTION-IF-NOT-FOUND is a list of commands to run if it is not
-+#   found. If ACTION-IF-FOUND is not specified, the default action will
-+#   define HAVE_MPI.
-+#
-+# LICENSE
-+#
-+#   Copyright (c) 2008 Steven G. Johnson <stevenj@alum.mit.edu>
-+#   Copyright (c) 2008 Julian C. Cummings <cummings@cacr.caltech.edu>
-+#
-+#   This program is free software: you can redistribute it and/or modify it
-+#   under the terms of the GNU General Public License as published by the
-+#   Free Software Foundation, either version 3 of the License, or (at your
-+#   option) any later version.
-+#
-+#   This program is distributed in the hope that it will be useful, but
-+#   WITHOUT ANY WARRANTY; without even the implied warranty of
-+#   MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU General
-+#   Public License for more details.
-+#
-+#   You should have received a copy of the GNU General Public License along
-+#   with this program. If not, see <http://www.gnu.org/licenses/>.
-+#
-+#   As a special exception, the respective Autoconf Macro's copyright owner
-+#   gives unlimited permission to copy, distribute and modify the configure
-+#   scripts that are the output of Autoconf when processing the Macro. You
-+#   need not follow the terms of the GNU General Public License when using
-+#   or distributing such scripts, even though portions of the text of the
-+#   Macro appear in them. The GNU General Public License (GPL) does govern
-+#   all other use of the material that constitutes the Autoconf Macro.
-+#
-+#   This special exception to the GPL applies to versions of the Autoconf
-+#   Macro released by the Autoconf Archive. When you make and distribute a
-+#   modified version of the Autoconf Macro, you may extend this special
-+#   exception to the GPL to apply to your modified version as well.
-+
-+AU_ALIAS([ACX_MPI], [AX_MPI])
-+AC_DEFUN([AX_MPI], [
-+AC_PREREQ(2.50) dnl for AC_LANG_CASE
-+
-+AC_LANG_CASE([C], [
-+	AC_REQUIRE([AC_PROG_CC])
-+	AC_ARG_VAR(MPICC,[MPI C compiler command])
-+	AC_CHECK_PROGS(MPICC, mpicc hcc mpxlc_r mpxlc mpcc cmpicc, $CC)
-+	ax_mpi_save_CC="$CC"
-+	CC="$MPICC"
-+	AC_SUBST(MPICC)
-+],
-+[C++], [
-+	AC_REQUIRE([AC_PROG_CXX])
-+	AC_ARG_VAR(MPICXX,[MPI C++ compiler command])
-+	AC_CHECK_PROGS(MPICXX, mpic++ mpicxx mpiCC hcp mpxlC_r mpxlC mpCC cmpic++, $CXX)
-+	ax_mpi_save_CXX="$CXX"
-+	CXX="$MPICXX"
-+	AC_SUBST(MPICXX)
-+],
-+[Fortran 77], [
-+	AC_REQUIRE([AC_PROG_F77])
-+	AC_ARG_VAR(MPIF77,[MPI Fortran 77 compiler command])
-+	AC_CHECK_PROGS(MPIF77, mpif77 hf77 mpxlf_r mpxlf mpf77 cmpifc, $F77)
-+	ax_mpi_save_F77="$F77"
-+	F77="$MPIF77"
-+	AC_SUBST(MPIF77)
-+],
-+[Fortran], [
-+	AC_REQUIRE([AC_PROG_FC])
-+	AC_ARG_VAR(MPIFC,[MPI Fortran compiler command])
-+	AC_CHECK_PROGS(MPIFC, mpif90 mpxlf95_r mpxlf90_r mpxlf95 mpxlf90 mpf90 cmpif90c, $FC)
-+	ax_mpi_save_FC="$FC"
-+	FC="$MPIFC"
-+	AC_SUBST(MPIFC)
-+])
-+
-+if test x = x"$MPILIBS"; then
-+	AC_LANG_CASE([C], [AC_CHECK_FUNC(MPI_Init, [MPILIBS=" "])],
-+		[C++], [AC_CHECK_FUNC(MPI_Init, [MPILIBS=" "])],
-+		[Fortran 77], [AC_MSG_CHECKING([for MPI_Init])
-+			AC_LINK_IFELSE([AC_LANG_PROGRAM([],[      call MPI_Init])],[MPILIBS=" "
-+				AC_MSG_RESULT(yes)], [AC_MSG_RESULT(no)])],
-+		[Fortran], [AC_MSG_CHECKING([for MPI_Init])
-+			AC_LINK_IFELSE([AC_LANG_PROGRAM([],[      call MPI_Init])],[MPILIBS=" "
-+				AC_MSG_RESULT(yes)], [AC_MSG_RESULT(no)])])
-+fi
-+AC_LANG_CASE([Fortran 77], [
-+	if test x = x"$MPILIBS"; then
-+		AC_CHECK_LIB(fmpi, MPI_Init, [MPILIBS="-lfmpi"])
-+	fi
-+	if test x = x"$MPILIBS"; then
-+		AC_CHECK_LIB(fmpich, MPI_Init, [MPILIBS="-lfmpich"])
-+	fi
-+],
-+[Fortran], [
-+	if test x = x"$MPILIBS"; then
-+		AC_CHECK_LIB(fmpi, MPI_Init, [MPILIBS="-lfmpi"])
-+	fi
-+	if test x = x"$MPILIBS"; then
-+		AC_CHECK_LIB(mpichf90, MPI_Init, [MPILIBS="-lmpichf90"])
-+	fi
-+])
-+if test x = x"$MPILIBS"; then
-+	AC_CHECK_LIB(mpi, MPI_Init, [MPILIBS="-lmpi"])
-+fi
-+if test x = x"$MPILIBS"; then
-+	AC_CHECK_LIB(mpich, MPI_Init, [MPILIBS="-lmpich"])
-+fi
-+
-+dnl We have to use AC_TRY_COMPILE and not AC_CHECK_HEADER because the
-+dnl latter uses $CPP, not $CC (which may be mpicc).
-+AC_LANG_CASE([C], [if test x != x"$MPILIBS"; then
-+	AC_MSG_CHECKING([for mpi.h])
-+	AC_TRY_COMPILE([#include <mpi.h>],[],[AC_MSG_RESULT(yes)], [MPILIBS=""
-+		AC_MSG_RESULT(no)])
-+fi],
-+[C++], [if test x != x"$MPILIBS"; then
-+	AC_MSG_CHECKING([for mpi.h])
-+	AC_TRY_COMPILE([#include <mpi.h>],[],[AC_MSG_RESULT(yes)], [MPILIBS=""
-+		AC_MSG_RESULT(no)])
-+fi],
-+[Fortran 77], [if test x != x"$MPILIBS"; then
-+	AC_MSG_CHECKING([for mpif.h])
-+	AC_COMPILE_IFELSE([AC_LANG_PROGRAM([],[      include 'mpif.h'])],[AC_MSG_RESULT(yes)], [MPILIBS=""
-+		AC_MSG_RESULT(no)])
-+fi],
-+[Fortran], [if test x != x"$MPILIBS"; then
-+	AC_MSG_CHECKING([for mpif.h])
-+	AC_COMPILE_IFELSE([AC_LANG_PROGRAM([],[      include 'mpif.h'])],[AC_MSG_RESULT(yes)], [MPILIBS=""
-+		AC_MSG_RESULT(no)])
-+fi])
-+
-+AC_LANG_CASE([C], [CC="$ax_mpi_save_CC"],
-+	[C++], [CXX="$ax_mpi_save_CXX"],
-+	[Fortran 77], [F77="$ax_mpi_save_F77"],
-+	[Fortran], [FC="$ax_mpi_save_FC"])
-+
-+AC_SUBST(MPILIBS)
-+
-+# Finally, execute ACTION-IF-FOUND/ACTION-IF-NOT-FOUND:
-+if test x = x"$MPILIBS"; then
-+        $2
-+        :
-+else
-+        ifelse([$1],,[AC_DEFINE(HAVE_MPI,1,[Define if you have the MPI library.])],[$1])
-+        :
-+fi
-+])dnl AX_MPI
diff --git a/sci-libs/parmetis/parmetis-3.2.0.ebuild b/sci-libs/parmetis/parmetis-3.2.0.ebuild
deleted file mode 100644
index 7d656c03b719..000000000000
--- a/sci-libs/parmetis/parmetis-3.2.0.ebuild
+++ /dev/null
@@ -1,40 +0,0 @@
-# Copyright 1999-2015 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-
-EAPI=5
-
-inherit eutils autotools
-
-MYP=ParMetis-${PV}
-
-DESCRIPTION="Parallel graph partitioner"
-HOMEPAGE="http://www-users.cs.umn.edu/~karypis/metis/parmetis/"
-SRC_URI="http://glaros.dtc.umn.edu/gkhome/fetch/sw/${PN}/OLD/${MYP}.tar.gz"
-
-SLOT="0"
-LICENSE="free-noncomm"
-KEYWORDS="amd64 x86 ~amd64-linux ~x86-linux"
-IUSE="doc static-libs"
-
-DEPEND="virtual/mpi"
-RDEPEND="${DEPEND}
-	!sci-libs/metis"
-
-S="${WORKDIR}/${MYP}"
-
-src_prepare() {
-	epatch "${FILESDIR}"/${PN}-3.1.1-autotools.patch
-	sed -i -e "s/3.1.1/${PV}/" configure.ac || die
-	sed -i -e 's/order.c//' -e 's/lmatch.c//' ParMETISLib/Makefile.am || die
-	eautoreconf
-	export CC=mpicc
-}
-
-src_configure() {
-	econf $(use_enable static-libs static)
-}
-
-src_install() {
-	default
-	use doc && dodoc Manual/*.pdf
-}
diff --git a/sci-libs/parmetis/parmetis-4.0.3.ebuild b/sci-libs/parmetis/parmetis-4.0.3.ebuild
index bb48b4e600fe..5fbc940345ef 100644
--- a/sci-libs/parmetis/parmetis-4.0.3.ebuild
+++ b/sci-libs/parmetis/parmetis-4.0.3.ebuild
@@ -1,4 +1,4 @@
-# Copyright 1999-2018 Gentoo Authors
+# Copyright 1999-2019 Gentoo Authors
 # Distributed under the terms of the GNU General Public License v2
 
 EAPI=6
@@ -17,7 +17,7 @@ SRC_URI="
 	examples? ( http://glaros.dtc.umn.edu/gkhome/fetch/sw/metis/${METISP}.tar.gz )"
 
 SLOT="0"
-KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux"
+KEYWORDS="amd64 x86 ~amd64-linux ~x86-linux"
 LICENSE="free-noncomm"
 IUSE="doc double-precision examples int64 mpi openmp pcre static-libs"