reinit the tree, so we can have metadata

9 files changed, 303 insertions, 0 deletions

diff --git a/sci-libs/libdap/Manifest b/sci-libs/libdap/Manifest
new file mode 100644
index 000000000000..60c54651513e
--- /dev/null
+++ b/sci-libs/libdap/Manifest
@@ -0,0 +1,11 @@
+AUX libdap-3.18.1-disable-broken-tests.patch 719 SHA256 2348872654cb04c2fc551dc7ef04b4611dfd8c5c14e857f92db1cca2f26e66a5 SHA512 11237422b0d129aaa52dc3559e2ffe0d4bcc0562e0acd476290af7a4026a1c7272bc1e0a0ceddcb40250746c0c71e4c6d63a780c5c1635132faf0ee609e3b88c WHIRLPOOL aecd9d89d5a09eb773b930ae9bd5764c4815ab49dfc4cb30ead71e97542449a0fb309bd0bff2781850e4c69184b669ae836236126044f337bfd31982abeee155
+AUX libdap-3.18.1-disable-cache-test.patch 965 SHA256 84d49c91d366d1890fcb82d05e01c9a63a7a26177174944de270cbe11ad47dab SHA512 087dd231f92d4117cbf469077922975029576239e507ef2cd5ae9d5b1f8f38ab3c4a3f32c8e2781a5c299c5e0a29c77cfd7d67ea8bf141058839f2bb4299b187 WHIRLPOOL d89c0ca4c0ee27733eee5ca6241e0110b31cf2ce1223e4ccf20f7b2d3827398ee5ed5d6999c8106c14a4eadf523d4c1035b1fc6e6f9370aaca7713172368ebc1
+AUX libdap-3.18.1-disable-dmr-tests.patch 1241 SHA256 0f7d4f06ed70759fd0dd896b0ab9f5d7f07a100bf8ec75b0ad7aab4cc9064d11 SHA512 5becf972bed0d27b32a67127af5ca2567757c05e04ef13aa3d514212320c552ad91a7b11b5386b73211a72017712b10875931a764f88ba9fa4fba40da453340f WHIRLPOOL 3fb6ef17558f18295f9f9456d06480b32720ecda4b6862b31016a6aafbef5178a7c1c1601353d2b73cc8615c11df08fbe890c096e054e131c1b0510d40b467ee
+AUX libdap-3.18.1-disable-net-tests.patch 1281 SHA256 0bcea9e0e9be748410fb1c124dc81748312335fabff5a83e1d0663f5b06ad636 SHA512 91db2d34693eed9a4e4c6f1d138520472c86290de131adaf47b609e3cc2ee7a6806eaf47d7d11a440034c226a18cb7ee1af5efadf08b2c3ba173792b6ee64813 WHIRLPOOL 42444e225361706305cbbf1f2ed0b2ddec4ab0dade49c4af278a3785c5c8da089864999607320f840a90e5cdac7c131f44fe1c805090149ad0e4735b3403b7a0
+AUX libdap-3.18.1-fix-buildsystem.patch 621 SHA256 cc6863ca60680cec4be0b5cf3cae496e457338e03897b5423d6c0bfb4695e80e SHA512 4aeb883dd338ed3c27ab2fe217d8419c8e4130485eec11f12b75dad6979034b4cbe251b4f81d21280a05257cd7bd5e56fdbb20b08f48ac0d48822024cf00d9bb WHIRLPOOL 03a5a5615794cdb7876d3fb62789cd29a96d256a9794fbfadcfffd177e28fdde15baefd1b37a8cb1d78bd84f9ad1fabe9c2fca7aa2994ab51fb2d5190e4d7c53
+AUX libdap-3.18.1-fix-c++14.patch 2287 SHA256 f3d16e7d0e9779078dee2291529ca4dfe6a04b6e6089cbfae2d8b3942079a885 SHA512 6bd2722f16cd3491922b43040148efb09dcf66f2403bcc8caae028d3497a5c864d6539b980c32cda01f35fffc2c724b68d20042f8d341f0a3a50c8fa78670535 WHIRLPOOL 95ae600f5c75cc1e1e7ae98d2cbdf08d856f5a093bd6221045f55d0204813abddf74aed4699d9b7432fb2a9b341ea9628557a21d61057a24e888b2e3afd2c60d
+DIST libdap-3.18.1.tar.gz 2209343 SHA256 a755c472d7c9e54bc3aa6c92a847a69466fbc6cdc56ee912f411802a725d57a4 SHA512 a1d06bbbad654718bbf9980dc0943935089c09772678f6457d4de8a9d37f1ce33c0e1cab4c5eefec6f9e159028b194d6e3a6021597276b233eda52603ae8dd38 WHIRLPOOL 74eb65be375bd81e5d6db9fb93bdd219add79c12fea35eed98445df38f6dc212fc33cc51900ac93657166794b0700ff1be17fd7f41379733de19ad7480f889f0
+EBUILD libdap-3.18.1.ebuild 1095 SHA256 2011c46ff14644b92b1ae83a330edb729381646727593fafba361e0911954ae7 SHA512 10f6e2e7070b7bae860043a15cbb4d570f68a9f0c265eef4416aa4400a8748878773b3d30b3a59f4fdd6bfa9d0cced7064974173d383bdab62334ec01e5216b8 WHIRLPOOL f272edeb731e68907ffa70afd00942428a86fbb65c9f9c321983b4788ee707491ded5c4fc7048c19503d853657e3d91a9acf1815ee2f7f68ba395f06b2fb28c0
+MISC ChangeLog 3424 SHA256 121ea7dff804d7b3553b55751b4284f5f524855b6d540364bd6df39a6fb80f29 SHA512 6abff7d825ddd0098b0932a2ea6c02a046f2581a91c5032f26154950456dcb80e2a7566056f9b0b5415797c84bc50de40836ccbb18a75d318ace1db76c579855 WHIRLPOOL 268dd4e717694faacce15daad13cb36e8d6e17ef37544e6c6be82c0766dce9f4becf9287fbe86ae771b2eeed1cf6c55c239391def9df9d3f5106eb1527d8a71b
+MISC ChangeLog-2015 2774 SHA256 de82d0d06b99c45fb57b56241920bceab958d3f77a6e9e748163d299789f440e SHA512 5f02cbef20c09997ef2f75cb18b9211865b6e5b57b0502cea34a4842f07f369c8b92fb2415adcdaaca8eef354abb679e297d05a53215eb2570e9aa1bd3b5fb90 WHIRLPOOL 5ada4d1662bb5b32ee3bd623037d8c955ee8e45c29d6c0b07e06e655e793d1be1c9a26ec7ecda9f419553bdbd5633f77a844d8efd96277c6cab66aacd63e6133
+MISC metadata.xml 772 SHA256 0a3dacae503eb2014129d764aaa41bd1a0f6f4192d9081c478a0824ecfb25fb6 SHA512 277e96ec4eef7a080303e3b3b054d51c017ef2227644ed2d78a35d5c873f085f4524aa14b4f0f523a3d501c96a1f078032941d62005721e8264e2c5d625182eb WHIRLPOOL efb0aabe6a5cf51c3dee45f1e3d3477fc1918b926bceb2de22d32d25136428feeca9beab5864972c5d78e3cba1f73fdeba0bea90b4138a22929ab04820b580c7
diff --git a/sci-libs/libdap/files/libdap-3.18.1-disable-broken-tests.patch b/sci-libs/libdap/files/libdap-3.18.1-disable-broken-tests.patch
new file mode 100644
index 000000000000..09c33e6f381a
--- /dev/null
+++ b/sci-libs/libdap/files/libdap-3.18.1-disable-broken-tests.patch
@@ -0,0 +1,18 @@
+Description: D4FilterClauseTest breaks on arm*, powerpc, s390x.
+Author: Alastair McKinstry <mckinstry@debian.org>
+Last-Updated: 2016-08-31
+Forwarded: no
+
+Index: libdap-3.18.0/unit-tests/Makefile.am
+===================================================================
+--- libdap-3.18.0.orig/unit-tests/Makefile.am
++++ libdap-3.18.0/unit-tests/Makefile.am
+@@ -74,7 +74,7 @@ UNIT_TESTS = marshT arrayT attrTableT st
+ if DAP4_DEFINED
+ UNIT_TESTS += D4MarshallerTest D4UnMarshallerTest D4DimensionsTest \
+ 	D4EnumDefsTest D4GroupTest D4ParserSax2Test D4AttributesTest D4EnumTest \
+-	chunked_iostream_test D4AsyncDocTest DMRTest D4FilterClauseTest \
++	chunked_iostream_test D4AsyncDocTest DMRTest  \
+ 	D4SequenceTest
+ endif
+ 
diff --git a/sci-libs/libdap/files/libdap-3.18.1-disable-cache-test.patch b/sci-libs/libdap/files/libdap-3.18.1-disable-cache-test.patch
new file mode 100644
index 000000000000..6ce7ae0c4f6d
--- /dev/null
+++ b/sci-libs/libdap/files/libdap-3.18.1-disable-cache-test.patch
@@ -0,0 +1,22 @@
+Author: Alastair McKinstry <mckinstry@debian.org>
+Description: Disable test as website appears to be down
+Forwarded: no
+Last-Updated: 2015-10-20
+
+Index: libdap-3.18.0/unit-tests/Makefile.am
+===================================================================
+--- libdap-3.18.0.orig/unit-tests/Makefile.am
++++ libdap-3.18.0/unit-tests/Makefile.am
+@@ -67,9 +67,9 @@ D4-xml.tar.gz: D4-xml/DMR_*[0-9].xml
+ if CPPUNIT
+ UNIT_TESTS = marshT arrayT attrTableT structT sequenceT ddsT dasT \
+ 	RegexTest ArrayTest AttrTableTest ByteTest MIMEUtilTest ancT DASTest \
+-	DDSTest	DDXParserTest  generalUtilTest HTTPConnectTest parserUtilTest \
+-	RCReaderTest SequenceTest SignalHandlerTest  MarshallerTest \
+-	HTTPCacheTest ServerFunctionsListUnitTest
++	DDSTest	DDXParserTest  generalUtilTest  parserUtilTest \
++	SequenceTest SignalHandlerTest  MarshallerTest \
++	ServerFunctionsListUnitTest
+ 
+ if DAP4_DEFINED
+ UNIT_TESTS += D4MarshallerTest D4UnMarshallerTest D4DimensionsTest \
diff --git a/sci-libs/libdap/files/libdap-3.18.1-disable-dmr-tests.patch b/sci-libs/libdap/files/libdap-3.18.1-disable-dmr-tests.patch
new file mode 100644
index 000000000000..d4691f59518f
--- /dev/null
+++ b/sci-libs/libdap/files/libdap-3.18.1-disable-dmr-tests.patch
@@ -0,0 +1,31 @@
+Author: Alastair McKinstry <mckinstry@debian.org>
+Description: Disable DMR tests which break on big-endian archs at the moment
+Last-Updated: 2015-11-08
+Forwarded: no
+
+Index: libdap-3.18.0/tests/Makefile.am
+===================================================================
+--- libdap-3.18.0.orig/tests/Makefile.am
++++ libdap-3.18.0/tests/Makefile.am
+@@ -31,7 +31,7 @@ endif
+ # TESTS = DASTest DDSTest EXPRTest DMRTest getdapTest
+ 
+ check_SCRIPTS = $(DASTESTSUITE) $(DDSTESTSUITE) $(EXPRTESTSUITE) \
+-	$(DMRTESTSUITE) $(GETDAPTESTSUITE)
++	$(GETDAPTESTSUITE)
+ 
+ # Build the test drivers. The drivers all use the
+ # subclassed types in Test*.cc and the TestTypesFactory.
+@@ -107,11 +107,10 @@ DMRTESTSUITE = $(srcdir)/DMRTest
+ GETDAPTESTSUITE = $(srcdir)/getdapTest
+ 
+ check-local: atconfig atlocal $(DASTESTSUITE) $(DDSTESTSUITE) \
+-$(EXPRTESTSUITE) $(DMRTESTSUITE) $(GETDAPTESTSUITE) 
++$(EXPRTESTSUITE)  $(GETDAPTESTSUITE) 
+ 	$(SHELL) '$(DASTESTSUITE)' $(TESTSUITEFLAGS)
+ 	$(SHELL) '$(DDSTESTSUITE)' $(TESTSUITEFLAGS)
+ 	$(SHELL) '$(EXPRTESTSUITE)' $(TESTSUITEFLAGS)
+-	$(SHELL) '$(DMRTESTSUITE)' $(TESTSUITEFLAGS)
+ 	$(SHELL) '$(GETDAPTESTSUITE)' $(TESTSUITEFLAGS)
+ 
+ # Make sure there are no spaces after the DASTESTSUITE names. jhrg 3/16/15
diff --git a/sci-libs/libdap/files/libdap-3.18.1-disable-net-tests.patch b/sci-libs/libdap/files/libdap-3.18.1-disable-net-tests.patch
new file mode 100644
index 000000000000..7c42ec1199c4
--- /dev/null
+++ b/sci-libs/libdap/files/libdap-3.18.1-disable-net-tests.patch
@@ -0,0 +1,33 @@
+Author: Alastair McKinstry <mckinstry@debian.org>
+Description: Disable network tests, as network not available on
+ most build systems
+Last-Updated: 2016-02-06
+Forwarded: not-needed
+
+Index: libdap-3.18.0/tests/Makefile.am
+===================================================================
+--- libdap-3.18.0.orig/tests/Makefile.am
++++ libdap-3.18.0/tests/Makefile.am
+@@ -30,8 +30,7 @@ endif
+ 
+ # TESTS = DASTest DDSTest EXPRTest DMRTest getdapTest
+ 
+-check_SCRIPTS = $(DASTESTSUITE) $(DDSTESTSUITE) $(EXPRTESTSUITE) \
+-	$(GETDAPTESTSUITE)
++check_SCRIPTS = $(DASTESTSUITE) $(DDSTESTSUITE) $(EXPRTESTSUITE) 
+ 
+ # Build the test drivers. The drivers all use the
+ # subclassed types in Test*.cc and the TestTypesFactory.
+@@ -107,11 +106,10 @@ DMRTESTSUITE = $(srcdir)/DMRTest
+ GETDAPTESTSUITE = $(srcdir)/getdapTest
+ 
+ check-local: atconfig atlocal $(DASTESTSUITE) $(DDSTESTSUITE) \
+-$(EXPRTESTSUITE)  $(GETDAPTESTSUITE) 
++$(EXPRTESTSUITE) 
+ 	$(SHELL) '$(DASTESTSUITE)' $(TESTSUITEFLAGS)
+ 	$(SHELL) '$(DDSTESTSUITE)' $(TESTSUITEFLAGS)
+ 	$(SHELL) '$(EXPRTESTSUITE)' $(TESTSUITEFLAGS)
+-	$(SHELL) '$(GETDAPTESTSUITE)' $(TESTSUITEFLAGS)
+ 
+ # Make sure there are no spaces after the DASTESTSUITE names. jhrg 3/16/15
+ # Delete the scripts here and not using CLEANFILES because this target is
diff --git a/sci-libs/libdap/files/libdap-3.18.1-fix-buildsystem.patch b/sci-libs/libdap/files/libdap-3.18.1-fix-buildsystem.patch
new file mode 100644
index 000000000000..f36fdceb1fd0
--- /dev/null
+++ b/sci-libs/libdap/files/libdap-3.18.1-fix-buildsystem.patch
@@ -0,0 +1,20 @@
+Do not install headers and static library required only for test suite.
+
+--- a/tests/Makefile.am
++++ b/tests/Makefile.am
+@@ -36,13 +36,13 @@
+ # Build the test drivers. The drivers all use the
+ # subclassed types in Test*.cc and the TestTypesFactory.
+ 
+-lib_LIBRARIES = libtest-types.a
++noinst_LIBRARIES = libtest-types.a
+ 
+ libtest_types_a_SOURCES = $(TESTSRCS) $(TEST_HDR)
+ libtest_types_a_CXXFLAGS = -fPIC
+ 
+ testheadersdir = $(pkgincludedir)/test
+-testheaders_HEADERS = $(TEST_HDR)
++noinst_testheaders = $(TEST_HDR)
+ 
+ das_test_SOURCES = das-test.cc
+ das_test_LDADD =  libtest-types.a ../libdapserver.la ../libdap.la 
diff --git a/sci-libs/libdap/files/libdap-3.18.1-fix-c++14.patch b/sci-libs/libdap/files/libdap-3.18.1-fix-c++14.patch
new file mode 100644
index 000000000000..6b74fa10a240
--- /dev/null
+++ b/sci-libs/libdap/files/libdap-3.18.1-fix-c++14.patch
@@ -0,0 +1,100 @@
+C++11 changed destructor semantics to be noexcept(true)
+by default, leading to potentially changed semantics.
+
+--- a/HTTPResponse.h
++++ b/HTTPResponse.h
+@@ -115,6 +115,9 @@
+     temp_file and headers are deleted. If the tmp file name is "", it is
+     not deleted. */
+     virtual ~HTTPResponse()
++#if __cplusplus >= 201103L
++    noexcept(false)
++#endif
+     {
+         DBG(cerr << "Freeing HTTPConnect resources (" + d_file + ")... ");
+ 
+--- a/MarshallerThread.cc
++++ b/MarshallerThread.cc
+@@ -106,6 +106,9 @@
+  * Unlock the mutex
+  */
+ Locker::~Locker()
++#if __cplusplus >= 201103L
++    noexcept(false)
++#endif
+ {
+     DBG(cerr << "Unlocking the mutex! (" << pthread_self() << ")" << endl);
+ 
+@@ -140,6 +143,9 @@
+ }
+ 
+ ChildLocker::~ChildLocker()
++#if __cplusplus >= 201103L
++    noexcept(false)
++#endif
+ {
+     DBG(cerr << "Unlocking the mutex! (" << pthread_self() << ")" << endl);
+ 
+@@ -164,6 +170,9 @@
+ }
+ 
+ MarshallerThread::~MarshallerThread()
++#if __cplusplus >= 201103L
++    noexcept(false)
++#endif
+ {
+     int status = pthread_mutex_lock(&d_out_mutex);
+     if (status != 0) throw InternalErr(__FILE__, __LINE__, "Could not lock m_mutex");
+--- a/MarshallerThread.h
++++ b/MarshallerThread.h
+@@ -52,7 +52,11 @@
+ class Locker {
+ public:
+     Locker(pthread_mutex_t &lock, pthread_cond_t &cond, int &count);
+-    virtual ~Locker();
++    virtual ~Locker()
++#if __cplusplus >= 201103L
++    noexcept(false)
++#endif
++    ;
+ 
+ private:
+     pthread_mutex_t& m_mutex;
+@@ -74,7 +78,11 @@
+ class ChildLocker {
+ public:
+     ChildLocker(pthread_mutex_t &lock, pthread_cond_t &cond, int &count);
+-    virtual ~ChildLocker();
++    virtual ~ChildLocker()
++#if __cplusplus >= 201103L
++    noexcept(false)
++#endif
++    ;
+ 
+ private:
+     pthread_mutex_t& m_mutex;
+@@ -144,7 +152,11 @@
+ 
+ public:
+     MarshallerThread();
+-    virtual ~MarshallerThread();
++    virtual ~MarshallerThread()
++#if __cplusplus >= 201103L
++    noexcept(false)
++#endif
++    ;
+ 
+     pthread_mutex_t &get_mutex() { return d_out_mutex; }
+     pthread_cond_t &get_cond() { return d_out_cond; }
+--- a/Response.h
++++ b/Response.h
+@@ -93,6 +93,9 @@
+ 
+     /** Close the stream. */
+     virtual ~Response()
++#if __cplusplus >= 201103L
++    noexcept(false)
++#endif
+     {
+         if (d_stream)
+             fclose(d_stream);
diff --git a/sci-libs/libdap/libdap-3.18.1.ebuild b/sci-libs/libdap/libdap-3.18.1.ebuild
new file mode 100644
index 000000000000..b0a4bfc02ba2
--- /dev/null
+++ b/sci-libs/libdap/libdap-3.18.1.ebuild
@@ -0,0 +1,51 @@
+# Copyright 1999-2017 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+
+EAPI=6
+
+inherit autotools
+
+DESCRIPTION="Implementation of a C++ SDK for DAP 2.0 and 3.2"
+HOMEPAGE="http://opendap.org/"
+SRC_URI="http://www.opendap.org/pub/source/${P}.tar.gz"
+
+LICENSE="|| ( LGPL-2.1 URI )"
+SLOT="0"
+KEYWORDS="amd64 ~ppc ~ppc64 x86 ~amd64-linux ~x86-linux"
+IUSE="static-libs test"
+
+RDEPEND="
+	dev-libs/libxml2:2
+	net-misc/curl
+	sys-libs/zlib"
+DEPEND="${RDEPEND}
+	virtual/pkgconfig
+	sys-devel/flex
+	test? ( dev-util/cppunit )"
+
+PATCHES=(
+	"${FILESDIR}/${PN}-3.18.1-fix-buildsystem.patch"
+	"${FILESDIR}/${PN}-3.18.1-fix-c++14.patch"
+	"${FILESDIR}/${PN}-3.18.1-disable-cache-test.patch"
+	"${FILESDIR}/${PN}-3.18.1-disable-dmr-tests.patch"
+	"${FILESDIR}/${PN}-3.18.1-disable-net-tests.patch"
+	"${FILESDIR}/${PN}-3.18.1-disable-broken-tests.patch"
+)
+
+src_prepare() {
+	default
+	eautoreconf
+}
+
+src_configure() {
+	econf \
+		--enable-shared \
+		$(use_enable static-libs static)
+}
+
+src_install() {
+	default
+
+	# package provides .pc files
+	find "${D}" -name '*.la' -delete || die
+}
diff --git a/sci-libs/libdap/metadata.xml b/sci-libs/libdap/metadata.xml
new file mode 100644
index 000000000000..c1f3d9787739
--- /dev/null
+++ b/sci-libs/libdap/metadata.xml
@@ -0,0 +1,17 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
+<pkgmetadata>
+<maintainer type="project">
+	<email>sci-geosciences@gentoo.org</email>
+	<name>Gentoo Geosciences Project</name>
+</maintainer>
+<longdescription>
+	libdap is a C++ implementation of OPeNDAP which allows access to
+	data over the internet, from programs that weren't originally
+	designed for that purpose, as well as some that were.  While OPeNDAP
+	s the original developer of the Data Access Protocol (DAP) which
+	it's software uses, many other groups have adopted DAP and provide
+	compatible clients, servers and software development kits. DAP is a
+	NASA community standard: http://www.esdswg.org/spg/rfc/ese-rfc-004
+</longdescription>
+</pkgmetadata>