reinit the tree, so we can have metadata

7 files changed, 173 insertions, 0 deletions

diff --git a/sci-libs/io_lib/Manifest b/sci-libs/io_lib/Manifest
new file mode 100644
index 000000000000..17b57532c5c8
--- /dev/null
+++ b/sci-libs/io_lib/Manifest
@@ -0,0 +1,13 @@
+DIST io_lib-1.10.1.tar.gz 254965 SHA256 380c9d584b2c851adcf02c8e40b8ecc86b292245dcb6baf76071766e33ce8c17 SHA512 78cae4cf6836c9ad9e95fe7210e475f1ec61a963065a277236acb815df0c8c08f8afad5f0b984a7f8cd7525aacb6e64119978a32d440b7789235929a5a72f480 WHIRLPOOL 970e6019e2d242847976396137700d7f71290b9011f0af1c64c3efb0c48a4dca48f6a7a510f3acef7cb3c5f25211d829936a927a69b54f43ded976c65e28f697
+DIST io_lib-1.11.2.1.tar.gz 385229 SHA256 5a7b90aec5971286200ebe42bf4105b58476f464d577d5c21245d64870a4596d SHA512 56c2f76bd8ea1d6a1e03bce005a03df73b8b3397e482e1537620fda9fadd9128bf2fe6789283dc75a77ed5f8424e31a2f81f2a54dbb2b93886b52eb0613843b8 WHIRLPOOL 91d82540b6f56779f983de09870ff42d5184a7c44742e2c1d69c4e932b951e7c934ebfaf0ebef8d4b66f1cdde975859fc3ed7506213c31db524adeca069fefe0
+DIST io_lib-1.12.5.tar.gz 782430 SHA256 0bcecddaad5e94f1f9d2e9f2ae37e4303b6e8d0c9f6dabecb6bbebd6816fe80f SHA512 414406fc26e0c991c0390bfa5d28d7682a458efbaa51f58df699665e6ff6f9ac3bda724508bf3b5f5cf666983bc2efec53ff719783fe14f54e79d54ca20158d0 WHIRLPOOL 41dc2264401faa145a64ba5544e85fb02be2418a087561bc966a1fb66267e66e7683f3cfd658428a92b4952e776bd1952eba4e4c69921180afea110a230e4e6d
+DIST io_lib-1.13.2.tar.gz 1579795 SHA256 780b1a52a3d3b96dd92b855623f7085a709978925e4e0eb25a8fc9e56a917df0 SHA512 2192c93a730f5fb6658f75fe6688605c813fcbeef8765d6b372c11a09e746536fdba7fcd20bc95bae3b11dfed0cd1bb52d6dd40cf33747164da91cb94a6ebcf9 WHIRLPOOL 01aedfa2dbe2b7742b901d60c0103b237246a5aa0d67848a503d89690fc94a93af4276f38aa1dfbaa85e58bec60041dc230743e8d6783b37e1df6489baba46e4
+DIST io_lib-1.14.7.tar.gz 2177248 SHA256 e75e463f62cd97bf58cf52bed76362af5e19823248be858dfeb85bdca107c754 SHA512 c1021f0a0dd284e8abbf9cc1dd11995550cf6621455c873effaab56b573fee053ed9e55879003c735c26c403a0aa34d75be87d337cd515cc912706abe7e08665 WHIRLPOOL 43a97772cfa1e9684ed0866c243fa32a6647290ba0bd40b6edf0dce01542249216a08337acca81f06f1a7b54b561ee84cf7c66872234b0b6c8b3f60595373e1d
+EBUILD io_lib-1.10.1.ebuild 693 SHA256 e49116794040a2dd0521fe286c8fef85a35fe605bc43b3d4b7246831a67a0bd5 SHA512 a493a5fe3d98b3ddf62469c6b8368b8a6b4a2028e331f23f3a51e0dc59d71b6cb95b81491b95d3dd5a8180c45ea5a2279672c3fc97e094a1cea0ba86b25034de WHIRLPOOL be42278838aba2f1a381f7d6cf173e48ba8f6912750a1e904aa7aa5161fb48d60f9ec95568d176b6cd80e3a2bd551311191a8de4bee5816d3a6acbb345f457f2
+EBUILD io_lib-1.11.2.1.ebuild 774 SHA256 6df54444750b61f55ef1aa98d3c0ae0a67b2815c132557b6a5a2fe46e6804593 SHA512 01656bd0f015ce2e32d5f825d40fd138da7a28181fc5e4ae7cbbfd1dd7e8c0d09e7372b260e42bded05ffb91f32d5fa052df45370f49daafcd4e683594207ab3 WHIRLPOOL c93a4fe66fdc13c9c23632333680a9715ae6ed13fb99e60f9ae4c8fce0e9ce321d84cc9cfc01fc68d29a52695190c2d91b54b822ac35ff9f322db7ca8e202d35
+EBUILD io_lib-1.12.5.ebuild 809 SHA256 99836e059ce1780b39d781279da01ae25684d366607bcc9d154528ce5ce2095d SHA512 de26016687c0aa4c2600fd13a19747101faff8c47be9a8467f02b4e57ac1ecfecbbf3ca8c9f62f899d62946a668acf0fa6c1c4db4059ff003e102cdf22b0dfbc WHIRLPOOL e569c33816ebb3d900d29f47da2a6d0a018598a860453c2d099ca1376e617d4d77d427d4f515ecd16635cd6c45d34a0b7b45a95b3f7dcbbd139606832a89db86
+EBUILD io_lib-1.13.2.ebuild 795 SHA256 f101400d8acfb6cbee9d26599f671f346a915f61ea93e1dedac2f813a5de2044 SHA512 caf84e31cb8f9e595870b8081cdb26b245c0f3327723412f880b9b8834668660aad93d658d48a8bb6344c8b7290a580b1f5ee6e63003876ec8bbc2585d1d19a9 WHIRLPOOL c4021b2b48f3c6cb1120d45caf8ba4bd115d941d4aa476459d3fe4ef9f493b73d881fd3cd2d93e4069f6c6894b851330243dbe173cf57559832a634bd3fb2167
+EBUILD io_lib-1.14.7.ebuild 719 SHA256 edc8862ff6615f90e93289244210553f74bedf616be619ec57213641c62a81a8 SHA512 86dec29c999c4faca9da70f7dbfbea4c3a079ba04ab57655e1d4a550974696654c39ad42f004fd1b7a470d1a67ca801b72b72b38c7331c477d6e4c86e64e77e0 WHIRLPOOL 837bf8b12c67c37c41f2bd8155854727f35a07d58776acd6c9538a3ebd07b9a508815f23a1496afc1af29bbdbb7ef658ff729b1e0bc74a32a1e7a504bb5c8904
+MISC ChangeLog 2747 SHA256 e9af0da510da60db5b8cb736de5754a7511d955dcf31f14094ba79d36e95f8c1 SHA512 bfd7a35bc1a0a6741d5a4081c87c7d3b6c87e97ebbf1a6bcfbafb2a63f26aa83b6fdaa5b872db39cf2051d639b4f1df107745f4ae0ea918f13166b0b9bb747ea WHIRLPOOL 6ce74368c28c109aad17dba044d9a7f85be0b6cad0795b6f3e747276872f0b8366fc7859a49a6ca7ed34df01c1e102416414538e71a195fa7e268cdc5f482b5c
+MISC ChangeLog-2015 4051 SHA256 9fef5064cd3e0d4a99c77397f5f3a0d495cbcfaf41a55e0f6a4acbaa0e001923 SHA512 2cdddb3c5c5d284d23da0251d6183e0f19e0010463a663673b56a33ca915c7b4f2c701941f954508e65e2eceb882d7fde16fac40bfce8424956dbc8534d8626a WHIRLPOOL 3bb2ed71257e287ef05a8040234f5af0b73e82a1b138f48c5f2aa0559864e4799af43acdd23f2e6d1da1110b3dd3f3c9eed7ce35cb6b5b4a0cae510ec2de184d
+MISC metadata.xml 635 SHA256 664955affa66727df7ad8877a9a5e88c79984dbdf72b6b89bc157ef85d2146b7 SHA512 92cb3d08f968408ec914647d27f84c7e70cfeec650efd645f2631982af86b776cb91fd0963a2e96ccef1eb16e5867ef796fc19aa9f674f547c424803458243a7 WHIRLPOOL 01257e3abbeca79137f45398fd5b428f1447674cefa3bec2f5a519c5c741d2d648002145d1054c0047b3b2e577dae14f9eaa4cc8b23a5e27f297afc7b082e427
diff --git a/sci-libs/io_lib/io_lib-1.10.1.ebuild b/sci-libs/io_lib/io_lib-1.10.1.ebuild
new file mode 100644
index 000000000000..790405a5fc6e
--- /dev/null
+++ b/sci-libs/io_lib/io_lib-1.10.1.ebuild
@@ -0,0 +1,22 @@
+# Copyright 1999-2012 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+
+DESCRIPTION="A general purpose trace and experiment file reading/writing interface"
+HOMEPAGE="http://staden.sourceforge.net/"
+SRC_URI="mirror://sourceforge/staden/${P}.tar.gz"
+LICENSE="staden"
+
+SLOT="0"
+KEYWORDS="~alpha amd64 ~ia64 ~ppc ~sparc x86"
+IUSE=""
+
+# Prototype changes in io_lib-1.9.0 create incompatibilities with BioPerl. (Only
+# versions 1.8.11 and 1.8.12 will work with the BioPerl Staden extensions.)
+DEPEND="!sci-biology/bioperl"
+RDEPEND="${DEPEND}"
+
+src_install() {
+	make install DESTDIR="${D}" || die
+
+	dodoc CHANGES README || die "Failed to install documentation."
+}
diff --git a/sci-libs/io_lib/io_lib-1.11.2.1.ebuild b/sci-libs/io_lib/io_lib-1.11.2.1.ebuild
new file mode 100644
index 000000000000..b793f7eabbb4
--- /dev/null
+++ b/sci-libs/io_lib/io_lib-1.11.2.1.ebuild
@@ -0,0 +1,25 @@
+# Copyright 1999-2008 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+
+DESCRIPTION="A general purpose trace and experiment file reading/writing interface"
+HOMEPAGE="http://staden.sourceforge.net/"
+SRC_URI="mirror://sourceforge/staden/${P}.tar.gz"
+LICENSE="staden"
+
+SLOT="0"
+KEYWORDS="~alpha ~amd64 ~ia64 ~ppc ~sparc ~x86"
+IUSE=""
+
+# Prototype changes in io_lib-1.9.0 create incompatibilities with BioPerl. (Only
+# versions 1.8.11 and 1.8.12 will work with the BioPerl Staden extensions.)
+DEPEND="!sci-biology/bioperl"
+RDEPEND="${DEPEND}"
+
+S="${WORKDIR}/${PN}-1.11.2"
+
+src_install() {
+	make install DESTDIR="${D}" || die
+
+	dodoc ChangeLog CHANGES README docs/{Hash_File_Format,ZTR_format} || \
+			die "Failed to install documentation."
+}
diff --git a/sci-libs/io_lib/io_lib-1.12.5.ebuild b/sci-libs/io_lib/io_lib-1.12.5.ebuild
new file mode 100644
index 000000000000..00ac1a525aff
--- /dev/null
+++ b/sci-libs/io_lib/io_lib-1.12.5.ebuild
@@ -0,0 +1,31 @@
+# Copyright 1999-2012 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+
+EAPI=4
+
+DESCRIPTION="General purpose trace and experiment file reading/writing interface"
+HOMEPAGE="http://staden.sourceforge.net/"
+SRC_URI="mirror://sourceforge/staden/${P}.tar.gz"
+
+LICENSE="BSD"
+SLOT="0"
+KEYWORDS="~amd64 ~ppc ~x86 ~amd64-linux ~x86-linux"
+IUSE="static-libs"
+
+# needs stadden, not in portage
+RESTRICT=test
+# Prototype changes in io_lib-1.9.0 create incompatibilities with BioPerl. (Only
+# versions 1.8.11 and 1.8.12 will work with the BioPerl Staden extensions.)
+#DEPEND="!sci-biology/bioperl"
+DEPEND="net-misc/curl
+	sys-libs/zlib"
+RDEPEND="${DEPEND}"
+
+src_configure() {
+	econf $(use_enable static-libs static)
+}
+
+src_install() {
+	default
+	dodoc docs/{Hash_File_Format,ZTR_format}
+}
diff --git a/sci-libs/io_lib/io_lib-1.13.2.ebuild b/sci-libs/io_lib/io_lib-1.13.2.ebuild
new file mode 100644
index 000000000000..cf0f35094a51
--- /dev/null
+++ b/sci-libs/io_lib/io_lib-1.13.2.ebuild
@@ -0,0 +1,30 @@
+# Copyright 1999-2013 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+
+EAPI=5
+
+inherit autotools-utils
+
+DESCRIPTION="General purpose trace and experiment file reading/writing interface"
+HOMEPAGE="http://staden.sourceforge.net/"
+SRC_URI="mirror://sourceforge/staden/${P}.tar.gz"
+
+LICENSE="BSD"
+SLOT="0"
+KEYWORDS="~amd64 ~ppc ~x86 ~amd64-linux ~x86-linux"
+IUSE="static-libs"
+
+# needs stadden, not in portage
+RESTRICT=test
+# Prototype changes in io_lib-1.9.0 create incompatibilities with BioPerl. (Only
+# versions 1.8.11 and 1.8.12 will work with the BioPerl Staden extensions.)
+#DEPEND="!sci-biology/bioperl"
+DEPEND="
+	net-misc/curl
+	sys-libs/zlib"
+RDEPEND="${DEPEND}"
+
+src_install() {
+	autotools-utils_src_install
+	dodoc docs/{Hash_File_Format,ZTR_format}
+}
diff --git a/sci-libs/io_lib/io_lib-1.14.7.ebuild b/sci-libs/io_lib/io_lib-1.14.7.ebuild
new file mode 100644
index 000000000000..f1475e779918
--- /dev/null
+++ b/sci-libs/io_lib/io_lib-1.14.7.ebuild
@@ -0,0 +1,35 @@
+# Copyright 1999-2016 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+
+EAPI=6
+
+inherit eutils
+
+DESCRIPTION="General purpose trace and experiment file reading/writing interface"
+HOMEPAGE="http://staden.sourceforge.net/"
+SRC_URI="mirror://sourceforge/staden/${P}.tar.gz"
+
+LICENSE="BSD"
+SLOT="0"
+KEYWORDS="~amd64 ~ppc ~x86 ~amd64-linux ~x86-linux"
+IUSE="static-libs"
+
+DEPEND="
+	net-misc/curl
+	sys-libs/zlib"
+RDEPEND="${DEPEND}"
+
+# tests fails and might need sci-biology/staden from
+# the science overlay
+
+RESTRICT="test"
+
+src_configure() {
+	econf $(use static-libs static)
+}
+
+src_install() {
+	default
+	use static-libs || prune_libtool_files
+	dodoc docs/{Hash_File_Format,ZTR_format}
+}
diff --git a/sci-libs/io_lib/metadata.xml b/sci-libs/io_lib/metadata.xml
new file mode 100644
index 000000000000..a88279ec5d96
--- /dev/null
+++ b/sci-libs/io_lib/metadata.xml
@@ -0,0 +1,17 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
+<pkgmetadata>
+  <maintainer type="project">
+    <email>sci@gentoo.org</email>
+    <name>Gentoo Science Project</name>
+  </maintainer>
+  <longdescription>
+  io_lib is a library of file reading and writing code to provide a
+  general purpose trace file (and Experiment File) reading interface. The
+  programmer simply calls the (eg) read_reading to create a "Read" C structure
+  with the data loaded into memory.
+</longdescription>
+  <upstream>
+    <remote-id type="sourceforge">staden</remote-id>
+  </upstream>
+</pkgmetadata>