reinit the tree, so we can have metadata

5 files changed, 138 insertions, 0 deletions

diff --git a/sci-libs/inchi/Manifest b/sci-libs/inchi/Manifest
new file mode 100644
index 000000000000..ceef9ded4824
--- /dev/null
+++ b/sci-libs/inchi/Manifest
@@ -0,0 +1,8 @@
+AUX inchi-1.03-shared.patch 804 SHA256 bff5e32c125603e02f48f035493a9e5b342c4d0706f95f4c0d79418ff3342007 SHA512 58fef060fd199cd12f62135a139d0e09a5e50c7b0e8e3c992c698ab10ad88f938f18e002b5f590d0f4346b4a801b62906bdb0dd6391ad8e53e9c59f62a465085 WHIRLPOOL 907c2b55f89c22fc16f0a231b02232696c86572e239584156beca4dce45de6590534ee1ef8218bfdf1f62854eb9bb302779412067ed2287382c5a9511f20203b
+AUX inchi-1.04-static.patch 570 SHA256 d69d5b5ec0f39ba0f3281ea9604d36a2ed9ab022f30e441fa52f886077391ae2 SHA512 0bc4aaf5ff4565517dbef481ca89069f3e91bd8d2b02f8e2591519183feca8725004a51375bec4560002d35b030483a21d9e36a1eb8202e3692186e23dcb7078 WHIRLPOOL aedda41fa4c38c46f419635a0d2509730ae20cc72e25b58147cf1215548a59dfb08ebd5471358f3268647e475ac5f3e388ba52c4f1dcad2b76a2118c064e858b
+DIST inchi-1.04-doc.zip 2128303 SHA256 abede36063e838614aa6ade7f20f386f557a78aefb041e1ba0b736088a6a79bc SHA512 930fe10ac2bae11074b7e47446b5af9c01e2aa55f891d04912c71c76e214871c78cc22b3dafea99b57eede5080ac0cfaa6b6d35a73242c8549bea8ffa86e7df7 WHIRLPOOL 5cb5884dbfc9f2e530deb8be0e35643b0a6af70a5b4e069cd610407fac067261a3282ad9db22651fc2efc313ade78930de10ff165dd709a83880815b89e4a4fd
+DIST inchi-1.04.zip 2701930 SHA256 c187573c0f6a1fcd555393315383bd1f69563ee47bd43c898f17c473b7bb690a SHA512 c5a1c2f08d472fcde603acbd898a9a8880407474869eadf0089444503693ae89ff805c579161cb3ee9d7f18e891289a21c4b8a65cc7ece69ee730f7f4e283be4 WHIRLPOOL 89a7ac2f80a9a87a663934bd0f24af6aed77f51115bf0b4858f66c135f932b67dff7bbffa16999ab79f7ca1358ef716fa5f11cb8756011f7622f6440470c59e4
+EBUILD inchi-1.04.ebuild 1866 SHA256 a659274037ee6aeecf7629bbe6d2ec919121c7e7571419a75d5424d7f8abd4b8 SHA512 f1a9bff0cfe54e26d0c0368c539cc66cf0d405c852e7959f07ef9795082b74e1f7866c7c094edd8e83557af293b488f20c8e0adfaa083e5ba176b6aae158f7be WHIRLPOOL c18c8ee2176575f249b4211fd465452f9eb990e8b6c0b030e60f88b7c59dc56c0b0e1d4d1eeaac565b5eaf120d7c6db1bccf1a65bd7119fd862661b81123a33d
+MISC ChangeLog 2589 SHA256 ddbae389b130fa7af58e07d833516b2876916a67db5868c389644c4e46c889f7 SHA512 9276192da35219087f8de278be62b91e1cb389c6ebb92b8c895a495fd97d9148fc7927adb357e544e5bad5d0bbd2adb859f867aa1564fe91c63920f856c3624a WHIRLPOOL 93803a6b84d3f03e2d013d98ed365226ac0cfbe18944115f698886c4c0a7ae245a668b23c1901b4c2155cc778d102d2990cd515ea314547e429d615f0183a4a2
+MISC ChangeLog-2015 1702 SHA256 a5bcded51299c1740873451567d165af4c013249c79bc552d7d72e9132beafdc SHA512 12ff775e363978b3d8f3914844247714fff411f40cf895b8cf3a59e285adf3c25c3b7d3053792e75b056f7c0379d6163a87ba95ab8ec33a663d5d205804a28f9 WHIRLPOOL 697dec9225646c02a4df216f16187fd4711415d4d42bc0170be5620dca851bf486daa33a41b7ea093031373891dd64558ccf328a98b554a60a4c32552d7a2e95
+MISC metadata.xml 380 SHA256 2482e06cc13a03e4b3002070dc286a604c5a091013f673d8b096fc08326a6a98 SHA512 04f24f7bca8346ab9b06e3e7edd77e45a38bf48bb2a4592234999cf3f6fccd74851508b892e5d6b33ae9cac00ec7725985924e91c5a6fae3a032e551acfb044e WHIRLPOOL 1cc7f58c0103d3a995f0e7710a5b8d6e4d3573e64119872b8c4cb49c9c2896824f2513056086d7e6cd00dd614c36f5fef13af1e011a016e3bf28bd9122593bc8
diff --git a/sci-libs/inchi/files/inchi-1.03-shared.patch b/sci-libs/inchi/files/inchi-1.03-shared.patch
new file mode 100644
index 000000000000..6f4619d86bd9
--- /dev/null
+++ b/sci-libs/inchi/files/inchi-1.03-shared.patch
@@ -0,0 +1,20 @@
+ INCHI_API/gcc_so_makefile/makefile |    4 +++-
+ 1 files changed, 3 insertions(+), 1 deletions(-)
+
+diff --git a/INCHI_API/gcc_so_makefile/makefile b/INCHI_API/gcc_so_makefile/makefile
+index dd8e53c..cd617ad 100644
+--- a/INCHI_API/gcc_so_makefile/makefile
++++ b/INCHI_API/gcc_so_makefile/makefile
+@@ -213,9 +213,11 @@ $(INCHI_LIB_PATHNAME).so$(VERSION): $(INCHI_LIB_OBJS)
+ 	$(SHARED_LINK) $(SHARED_LINK_PARM) -o \
+   $(INCHI_LIB_PATHNAME).so$(VERSION) \
+   $(INCHI_LIB_OBJS) \
+-  -Wl$(LINUX_MAP)$(LINUX_Z_RELRO),-soname,$(INCHI_LIB_NAME).so$(MAIN_VERSION)
++  -Wl$(LINUX_MAP)$(LINUX_Z_RELRO),-soname,$(INCHI_LIB_NAME).so$(MAIN_VERSION) -lm
+ 	ln -fs $(INCHI_LIB_NAME).so$(VERSION) \
+   $(INCHI_LIB_PATHNAME).so$(MAIN_VERSION)
++	ln -fs $(INCHI_LIB_NAME).so$(VERSION) \
++  $(INCHI_LIB_PATHNAME).so
+ 
+ endif
+ 
diff --git a/sci-libs/inchi/files/inchi-1.04-static.patch b/sci-libs/inchi/files/inchi-1.04-static.patch
new file mode 100644
index 000000000000..a367c153824a
--- /dev/null
+++ b/sci-libs/inchi/files/inchi-1.04-static.patch
@@ -0,0 +1,26 @@
+--- INCHI_API/gcc_so_makefile/makefile	2012-05-13 14:52:53.587632989 +0300
++++ INCHI_API/gcc_so_makefile/makefile	2012-05-13 14:52:11.668635419 +0300
+@@ -209,6 +209,14 @@
+ 
+ else
+ 
++ifdef STATIC
++
++libinchi.a: $(INCHI_LIB_OBJS)
++	$(AR) rcs $(INCHI_LIB_PATHNAME).a $(INCHI_LIB_OBJS)
++	$(RANLIB) $(INCHI_LIB_PATHNAME).a
++
++else
++
+ $(INCHI_LIB_PATHNAME).so$(VERSION): $(INCHI_LIB_OBJS)
+ 	$(SHARED_LINK) $(SHARED_LINK_PARM) -o \
+   $(INCHI_LIB_PATHNAME).so$(VERSION) \
+@@ -219,6 +226,8 @@
+ 
+ endif
+ 
++endif
++
+ # === InChI Library compile rule =========
+ 
+ %.o: $(P_LIBR)%.c
diff --git a/sci-libs/inchi/inchi-1.04.ebuild b/sci-libs/inchi/inchi-1.04.ebuild
new file mode 100644
index 000000000000..84ae21c021e9
--- /dev/null
+++ b/sci-libs/inchi/inchi-1.04.ebuild
@@ -0,0 +1,73 @@
+# Copyright 1999-2015 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+
+EAPI=5
+
+inherit eutils toolchain-funcs
+
+DESCRIPTION="A program and library for generating standard and non-standard InChI and InChIKeys"
+HOMEPAGE="http://www.iupac.org/inchi/"
+SRC_URI="
+	http://www.inchi-trust.org/sites/default/files/inchi-${PV}/INCHI-1-API.ZIP -> ${P}.zip
+	doc? ( http://www.inchi-trust.org/sites/default/files/inchi-${PV}/INCHI-1-DOC.ZIP -> ${P}-doc.zip )"
+
+LICENSE="IUPAC-InChi"
+SLOT="0"
+KEYWORDS="amd64 arm ppc ppc64 x86 ~amd64-linux ~x86-linux"
+IUSE="doc static-libs"
+
+DEPEND="app-arch/unzip"
+RDEPEND=""
+
+S="${WORKDIR}"/INCHI-1-API
+
+src_prepare() {
+	epatch \
+		"${FILESDIR}"/${PN}-1.03-shared.patch \
+		"${FILESDIR}"/${PN}-1.04-static.patch
+	tc-export AR RANLIB
+}
+
+src_compile() {
+	local dir common_opts
+	common_opts=(
+			C_COMPILER=$(tc-getCC)
+			CPP_COMPILER=$(tc-getCXX)
+			LINKER="$(tc-getCXX) ${LDFLAGS}"
+			SHARED_LINK="$(tc-getCC) ${LDFLAGS} -shared"
+			C_COMPILER_OPTIONS="\${P_INCL} -ansi -DCOMPILE_ANSI_ONLY ${CFLAGS} -c "
+			CPP_COMPILER_OPTIONS="\${P_INCL} -D_LIB -ansi ${CXXFLAGS} -frtti -c "
+			C_OPTIONS="${CFLAGS} -fPIC -c "
+			LINKER_OPTIONS="${LDFLAGS}"
+			CREATE_MAIN=
+			ISLINUX=1
+	)
+	for dir in  INCHI/gcc/inchi-1 INCHI_API/gcc_so_makefile; do
+		pushd ${dir} > /dev/null
+		emake \
+			"${common_opts[@]}"
+		popd > /dev/null
+	done
+	if use static-libs ; then
+		pushd INCHI_API/gcc_so_makefile > /dev/null
+		emake libinchi.a \
+				"${common_opts[@]}" \
+				STATIC=1
+		popd > /dev/null
+	fi
+}
+
+src_install() {
+	dodoc readme*.txt
+	if use doc ; then
+		cd "${WORKDIR}/INCHI-1-DOC/"
+		docinto doc
+		dodoc *.pdf readme.txt
+	fi
+	dobin "${S}"/INCHI/gcc/inchi-1/inchi-1
+	cd "${S}/INCHI_API/gcc_so_makefile/result" || die
+	rm *gz || die
+	dolib.so lib*so*
+	use static-libs && dolib.a lib*a
+	doheader ../../inchi_main/inchi_api.h
+}
diff --git a/sci-libs/inchi/metadata.xml b/sci-libs/inchi/metadata.xml
new file mode 100644
index 000000000000..9b10958b0172
--- /dev/null
+++ b/sci-libs/inchi/metadata.xml
@@ -0,0 +1,11 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
+<pkgmetadata>
+  <maintainer type="project">
+    <email>sci-chemistry@gentoo.org</email>
+    <name>Gentoo Chemistry Project</name>
+  </maintainer>
+  <longdescription>
+Program v1.03 implementing IUPAC (Standard) InChI/InChIKey version 1.
+</longdescription>
+</pkgmetadata>