gentoo resync : 05.04.2019

2 files changed, 95 insertions, 0 deletions

diff --git a/sci-libs/hdf5/Manifest b/sci-libs/hdf5/Manifest
index 6e2ab7542b9c..71b611aad372 100644
--- a/sci-libs/hdf5/Manifest
+++ b/sci-libs/hdf5/Manifest
@@ -3,7 +3,9 @@ AUX hdf5-1.8.15-implicits.patch 1050 BLAKE2B 9a019e69e9e02c487c5cf460380aaff08c6
 AUX hdf5-1.8.9-mpicxx.patch 494 BLAKE2B 148d87af064e2ba28c918c8db39ece0782a179803e4c38c5cd5eaba81a673bb8aa3699a48e80a7ae2d4579ac0261cc21d5509e46661ada9a69f444a58eb45ecd SHA512 8b4c39e40591860652547ea8ff205230da7d67488233e911cbcb3416eab561f2529c65bc5e7c9c812bf4298812346f47f9209e5f69f7e8f66ad587306a5b477b
 AUX hdf5-1.8.9-static_libgfortran.patch 429 BLAKE2B 9e1c544a453c09b3498a7d9d3e8090c928571776934c4dd6b426cbdb2783ed8f47185d6ee0c73ede6b4f14e27459ef5e1412112e9d897daa2dc57f1ad5fb0b24 SHA512 af97c54469a90bf3b0e8ec1218d4ca95822ac0cbc7120114979fc467fe3114743c74f4d4e16f0c10b1cd82d40880ef482f6fd34e1effc7c621b981ad466204f9
 DIST hdf5-1.10.1.tar.bz2 11769617 BLAKE2B 66ad762aed90cea9e58a9735bf0e189d78befc40cac0e566586e967f2b3ba6f5bf8a6bfd12a2f4062f8b20900c16d467c34134c17dedfd8f345cb96bd853a2fe SHA512 266b0e2f28c5fd540099a4955244ddb8c03aca3ad40d626358643f033a6ae5e9266a1d6c1d60925c7d42d24d28a1549d3305fe8ddb42cec2379af7231b93e554
+DIST hdf5-1.10.5.tar.bz2 8706317 BLAKE2B ac326be8fe4ccc4b0153f15bc7d65aa8f1adc2ae279d3980f57ed46722b754d3f36ecf1d6273c75e80ed1afd4bbf10c6b1c5d9408e1f83a4b2e397e7902a7d3c SHA512 769e43b8672e26fe24ed68da0228c010d3d9bc950ca09f0bc60707911a2f26f2f8415c8abc8ec06e07667148d8cdb3b0c7b3e7860d9b19739629c5dfd5ce73d4
 DIST hdf5-1.8.18.tar.bz2 10081294 BLAKE2B cf0d0c8a41576bcf816460eaabcfab29cfffba240721a64fe584c42fbb322470f29fb93c8513f7bbdedeeb392c2fe64cd3261b47b47de5b01828dae0b1929cd3 SHA512 01f6d14bdd3be2ced9c63cc9e1820cd7ea11db649ff9f3a3055c18c4b0fffe777fd23baad536e3bce31c4d76fe17db64a3972762e1bb4d232927c1ca140e72b2
 EBUILD hdf5-1.10.1.ebuild 2808 BLAKE2B 79eb6b5c889d717f6a8391ce334baa0878971256460be4d6bde00726078f4a944c2e4843867c767fa25cf346cca9f7f2cf58f0c918d17bd4cf050a11ba17c396 SHA512 29b39083a7fc5400490c81a5c6ad9bc76485c5ac67f983a45524010b1d72e99cca6e218b1dd052c000bfd7bd7397ec770e6d62ca0d5e313ac3c3c2253387e758
+EBUILD hdf5-1.10.5.ebuild 2660 BLAKE2B 02eb512d9b204c31ec26bd0b61a9ab0d0b40c63505a07928aebc78185d765d4e551b0905fd5b0fa7c84feb117b0f909edb17f2803729ec55b80f26ecec43c3ff SHA512 bdde7e485f7dab120051b22ece32fdbd7ec943c859d37b007847789aa68cbf7153dc38dbf077e56415334743a6843457c94eb6a1883ea9a494ada48ded0781d7
 EBUILD hdf5-1.8.18.ebuild 3366 BLAKE2B 5ea79bd8cfd5664c92de2cfb62c826500b1847290684a9ad3a1bda7ac2aa33d2d428b59ce9f7f1bfb17637472742804ddb98f9018386ebfbdff33c2023d942e4 SHA512 54e66dc074fd9b0fe9ad23f23234fc20e79c6ed9e9759d6964cb8e4d3e79321c08b4539a814f2fae2c935bb9358549115a884b8f55719fb77744fd26ad680867
 MISC metadata.xml 822 BLAKE2B ab9bf739575f9758fa521e9640438b345379373884ffd25a021a15589b7016d519f01d4d4d39dc5c8efbd271fbeb89d584b3d627e2b0d90cecf55d36747447cf SHA512 5e6cb47fcf2e704887a375f527b447075a36a51225cc2bdf10892bff5cce548599dd6f04a36ae2e31f691bd635dd6cc5d1455729e05923a8992d95fb27716164
diff --git a/sci-libs/hdf5/hdf5-1.10.5.ebuild b/sci-libs/hdf5/hdf5-1.10.5.ebuild
new file mode 100644
index 000000000000..1e8158a6d6bd
--- /dev/null
+++ b/sci-libs/hdf5/hdf5-1.10.5.ebuild
@@ -0,0 +1,93 @@
+# Copyright 1999-2019 Gentoo Authors
+# Distributed under the terms of the GNU General Public License v2
+
+EAPI=7
+
+FORTRAN_NEEDED=fortran
+
+inherit autotools eutils fortran-2 flag-o-matic toolchain-funcs multilib prefix
+
+MY_P=${PN}-${PV/_p/-patch}
+MAJOR_P=${PN}-$(ver_cut 1-2)
+
+DESCRIPTION="General purpose library and file format for storing scientific data"
+HOMEPAGE="http://www.hdfgroup.org/HDF5/"
+SRC_URI="http://www.hdfgroup.org/ftp/HDF5/releases/${MAJOR_P}/${MY_P}/src/${MY_P}.tar.bz2"
+
+LICENSE="NCSA-HDF"
+SLOT="0/${PV%%_p*}"
+KEYWORDS="~alpha ~amd64 ~arm ~arm64 ~ia64 ~ppc ~ppc64 ~sparc ~x86 ~x86-fbsd ~amd64-linux ~x86-linux"
+IUSE="cxx debug examples fortran +hl mpi static-libs szip threads zlib"
+
+REQUIRED_USE="
+	cxx? ( !mpi ) mpi? ( !cxx )
+	threads? ( !cxx !mpi !fortran !hl )"
+
+RDEPEND="
+	mpi? ( virtual/mpi[romio] )
+	szip? ( virtual/szip )
+	zlib? ( sys-libs/zlib:0= )"
+
+DEPEND="${RDEPEND}
+	sys-devel/libtool:2
+	>=sys-devel/autoconf-2.69"
+
+S="${WORKDIR}/${MY_P}"
+
+PATCHES=(
+	"${FILESDIR}"/${PN}-1.8.9-static_libgfortran.patch
+	"${FILESDIR}"/${PN}-1.8.9-mpicxx.patch
+	"${FILESDIR}"/${PN}-1.8.13-no-messing-ldpath.patch
+)
+
+pkg_setup() {
+	tc-export CXX CC AR # workaround for bug 285148
+	use fortran && fortran-2_pkg_setup
+
+	if use mpi; then
+		if has_version 'sci-libs/hdf5[-mpi]'; then
+			ewarn "Installing hdf5 with mpi enabled with a previous hdf5 with mpi disabled may fail."
+			ewarn "Try to uninstall the current hdf5 prior to enabling mpi support."
+		fi
+		export CC=mpicc
+		use fortran && export FC=mpif90
+	elif has_version 'sci-libs/hdf5[mpi]'; then
+		ewarn "Installing hdf5 with mpi disabled while having hdf5 installed with mpi enabled may fail."
+		ewarn "Try to uninstall the current hdf5 prior to disabling mpi support."
+	fi
+}
+
+src_prepare() {
+	# respect gentoo examples directory
+	sed \
+		-e "s:hdf5_examples:doc/${PF}/examples:g" \
+		-i $(find . -name Makefile.am) $(find . -name "run*.sh.in") || die
+	sed \
+		-e '/docdir/d' \
+		-i config/commence.am || die
+	if ! use examples; then
+		sed -e '/^install:/ s/install-examples//' \
+			-i Makefile.am || die #409091
+	fi
+	# enable shared libs by default for h5cc config utility
+	sed -i -e "s/SHLIB:-no/SHLIB:-yes/g" tools/src/misc/h5cc.in || die
+	hprefixify m4/libtool.m4
+
+	default
+	eautomake
+}
+
+src_configure() {
+	econf \
+		--enable-deprecated-symbols \
+		$(use debug && echo --enable-build-mode=debug || echo --enable-build-mode=production) \
+		$(use_enable debug codestack) \
+		$(use_enable cxx) \
+		$(use_enable fortran) \
+		$(use_enable hl) \
+		$(use_enable mpi parallel) \
+		$(use_enable threads threadsafe) \
+		$(use_with szip szlib) \
+		$(use_with threads pthread) \
+		$(use_with zlib)
+}