reinit the tree, so we can have metadata

6 files changed, 304 insertions, 0 deletions

diff --git a/sci-libs/galib/Manifest b/sci-libs/galib/Manifest
new file mode 100644
index 000000000000..0b49ac0cd072
--- /dev/null
+++ b/sci-libs/galib/Manifest
@@ -0,0 +1,8 @@
+AUX galib-2.4.7-Wformat-security.patch 1804 SHA256 0fadf7504baa91f699759a8ac9ff739873160cf714bb28a7d370ced4c8b84c3b SHA512 6846b2b15f8b348dfc83a7df6688e0c92ab5aa3eb2a6ff113609756cdcb12a679c82af730aebbdba5f9496c439e1e27cc9549812fd77ff9a6ca55812ff756dfb WHIRLPOOL dfa7978c76657f12727795d35f32d5186997abe4631873d8d7d87d0a4a4486358d4a1539fd3b11bd59ce63a79dc05e49cc567877aa60707c69466735f5363e9b
+AUX galib-2.4.7-fix-buildsystem.patch 1576 SHA256 2f0b9cbdf03086aea86e28766777d55460a57a57c2040b44897ae02eebb5a135 SHA512 26c8634664b75ef94028dfbf51dce5417256290703f3717ce2fcf660b166012622db97447a7272781c44d02b3d1728470a0f64d4b1a089ad5e4d44eaebcf3004 WHIRLPOOL 9f999d456f6b444e6f4fe0ff37f44be2fa4c53e339f4e0507f0295ca02912f2229d21a0209b91404af5e4ad9dd5f6fe813dd9460ede783f386196e4f553d2c1b
+AUX galib-2.4.7-fix-c++14.patch 3951 SHA256 7c6a7e8b470d69648397520e6c616a69b64eb6457e14a5593f21b3dc5176a88a SHA512 2f843b121c06ee124f13cac106a492f495c2043a54030ebc7d67ccf386ea1eacd72dc14e5a4f925d0c1f345038d8d04ed6de96b0030bcb205714afed1e7103f4 WHIRLPOOL cc44c60680df797257530a95fb8506b102ebc6787d3e2c18bebe220a06c484d10415f42a76b6ac11a5a73e0ba0d86fb83bfe7a16a09eb313f793a1b4c9f82417
+DIST galib247.tgz 374912 SHA256 ea76b66ce4db4db2ed86e20d6d3ff144abaf73e33620104246639d9b2a465329 SHA512 9c2aca29f24d3f8401ba65c246a0ca7d1fa67e4f756a5258cdb0da111842ea2903c2d70cfd9d60823c9703bcb3415ca670a731924e99878d5536c2f7eb0faba4 WHIRLPOOL 027e1d8999bb09e31da717fb3fb84f023d4488cc161c173e55fdc545b58583f386b6bb9cab631c30f84eae8a8b58c4e669049507bc0ca8561a8ecfba2e57f480
+EBUILD galib-2.4.7-r1.ebuild 1147 SHA256 392b533ce8079ffcc9655b0866ae8f66b09e1e357d004d4d1ed96ac03a8a84df SHA512 746a8c18f69f76f64696831bda7bb1759312b541885d0e982db54107ea4d9f6567f7b22cb0b5d3e3a32c7c203371282332656e70492c107f8d18b68b4337c0e6 WHIRLPOOL c2c4a5d56ce7525a81fcdf8b16b4a544ac968564dc37f59a87b2dc06ca3677e1fabd451fb3b5ebf6239500d3ce20c30dd6496ba9b5eeba24e0eb3c0f29f10b10
+MISC ChangeLog 2994 SHA256 441353b17265bf71a110648cd7002055ecfa6f7f57a739c4d038e31ad9549397 SHA512 4490686872587b8b27ee8ebc1f52b563cd9c47285e41afafa6e4fc9060f9655380a4b7769d5fe5f38047f0cbf71174053c0c8e37ea40af67da8b21f60be22188 WHIRLPOOL 5573e74fb9f9d6269747a7054a6cef18e225ffd70214502e5419e9437a5bfa1b3366c4c43755d33c2f6bd27630001e8a6e934bdd6cf57937851d908a01d38103
+MISC ChangeLog-2015 2227 SHA256 89fff5b8f076131ae76cb0127377949a54100eff7e644d87372a0c0d3603340c SHA512 0d2841f7e9de22ef636b75c64a129ef04cf54569a6ab441e3f8e593f29c555e275ed0d0edc0cbddc0da2bd916c943605a32627c0b7b034bcfc6b430700eb0877 WHIRLPOOL ff8abaa66b96a07c450555ed291f4bfd16650223497cf14625eb52831b52f4e4ef4a946fa85ba5ae7d55e3c020f2fcdc382025b7e6892686c38335136992250a
+MISC metadata.xml 505 SHA256 b6ea03858b104ea5903f96e3718d6ee5a04d5601a45d1978bf5b0824301a3e73 SHA512 52b06bc61b4bb82f35309d4aae723cd4d1a0acb15204b9f28900b43c2def46f152444d7838eb5b4c5351a8a3a0075559c29e2ef438bc049b7fa3bd3689bd9192 WHIRLPOOL 2c1e03200b33058f288313d4269aee90472134cb41fdd13d7c2e0abf5a1c204cdd0e48703527975bbb4133b4bc67fa7d12f468c982338ed3a679e5173d3f1d86
diff --git a/sci-libs/galib/files/galib-2.4.7-Wformat-security.patch b/sci-libs/galib/files/galib-2.4.7-Wformat-security.patch
new file mode 100644
index 000000000000..faa7dcff446d
--- /dev/null
+++ b/sci-libs/galib/files/galib-2.4.7-Wformat-security.patch
@@ -0,0 +1,79 @@
+Fix -Wformat-security issues, as we do not want to install potentially
+dangerous example C++ files on user systems:
+* ex18.C: In function ‘int main(int, char**)’:
+* ex18.C:92:27: warning: format not a string literal and no format arguments [-Wformat-security]
+*   sprintf(filename, argv[i]);
+
+--- a/examples/ex18.C
++++ b/examples/ex18.C
+@@ -89,7 +89,7 @@
+         exit(1);
+       }
+       else{
+-	sprintf(filename, argv[i]);
++	sprintf(filename, "%s", argv[i]);
+         continue;
+       }
+     }
+--- a/examples/ex3.C
++++ b/examples/ex3.C
+@@ -71,7 +71,7 @@
+         exit(1);
+       }
+       else{
+-	sprintf(filename, argv[i]);
++	sprintf(filename, "%s", argv[i]);
+         continue;
+       }
+     }
+--- a/examples/ex5.C
++++ b/examples/ex5.C
+@@ -308,7 +308,7 @@
+         exit(1);
+       }
+       else{
+-        sprintf(filename1, argv[i]);
++        sprintf(filename1, "%s", argv[i]);
+         continue;
+       }
+     }
+@@ -318,7 +318,7 @@
+         exit(1);
+       }
+       else{
+-        sprintf(filename2, argv[i]);
++        sprintf(filename2, "%s", argv[i]);
+         continue;
+       }
+     }
+--- a/examples/ex7.C
++++ b/examples/ex7.C
+@@ -68,7 +68,7 @@
+         exit(1);
+       }
+       else{
+-	sprintf(datafile, argv[i]);
++	sprintf(datafile, "%s", argv[i]);
+         continue;
+       }
+     }
+@@ -78,7 +78,7 @@
+         exit(1);
+       }
+       else{
+-	sprintf(parmfile, argv[i]);
++	sprintf(parmfile, "%s", argv[i]);
+ 	params.read(parmfile);
+         continue;
+       }
+--- a/ga/gaerror.C
++++ b/ga/gaerror.C
+@@ -21,7 +21,7 @@
+ static STD_OSTREAM *__gaErrStream = & STD_CERR;
+ #endif
+ static GABoolean __gaErrFlag = gaTrue;
+-static char *__gaErrStr[] = {
++static const char *__gaErrStr[] = {
+   "error reading from file: ",
+   "error writing to file: ",
+   "unexpected EOF encountered during read.",
diff --git a/sci-libs/galib/files/galib-2.4.7-fix-buildsystem.patch b/sci-libs/galib/files/galib-2.4.7-fix-buildsystem.patch
new file mode 100644
index 000000000000..3ed7ad84e6d4
--- /dev/null
+++ b/sci-libs/galib/files/galib-2.4.7-fix-buildsystem.patch
@@ -0,0 +1,65 @@
+Fix the build system, removing hardcoded values for toolchain variables.
+
+--- a/examples/makefile
++++ b/examples/makefile
+@@ -6,7 +6,6 @@
+ # want to compile.  See the README for a description of what each example does.
+ # -----------------------------------------------------------------------------
+ 
+-include ../makevars
+ 
+ # Set these paths to the location of the GA library and headers.
+ #GA_INC_DIR= /usr/local/include
+@@ -14,8 +13,6 @@
+ GA_INC_DIR= ..
+ GA_LIB_DIR= ../ga
+ 
+-INC_DIRS= -I$(GA_INC_DIR)
+-LIB_DIRS= -L$(GA_LIB_DIR)
+ 
+ EXS=randtest\
+  ex1  ex2  ex3  ex4  ex5  ex6  ex7  ex8  ex9\
+@@ -24,7 +21,7 @@
+ 
+ .SUFFIXES: .C
+ .C.o:
+-	$(CXX) $(CXXFLAGS) $(INC_DIRS) -c $<
++	$(CXX) $(CXXFLAGS) -I.. -c $<
+ 
+ all: $(EXS)
+ 
+@@ -34,7 +31,7 @@
+ 
+ # Use this for gnu make
+ $(EXS): %: %.o
+-	$(CXX) $@.o -o $@ $(LIB_DIRS) -lga -lm $(CXX_LIBS)
++	$(CXX) $@.o -o $@ -L../ga/ -lga -lm $(CXX_LIBS)
+ 
+ clean:
+ 	$(RM) $(EXS)
+--- a/ga/makefile
++++ b/ga/makefile
+@@ -14,7 +14,7 @@
+ 
+ $(LIB): $(OBJS) 
+ 	$(PRELINK)
+-	$(AR) $(LIB) $?
++	$(AR) rv $(LIB) $?
+ 	$(RANLIB) $(LIB)
+ 	echo "$(CXX) $(CXXFLAGS)" > BUILD
+ 	@echo $(LIB) is now up-to-date
+--- a/makevars
++++ b/makevars
+@@ -31,12 +31,7 @@
+ #  verified 06mar07 on linux-x86 (debian with gcc 3.3.5)
+ #  verified 06mar07 on linux-x86 (ubuntu with gcc 4.0.3)
+ #  verified 06mar07 on macosx-ppc (macosx 10.4.8 with gcc 4.0.1)
+-CXX         = g++
+-CXXFLAGS    = -g -Wall
+-LD          = g++ -w
+-AR          = ar rv
+ INSTALL     = install -c
+-RANLIB      = echo no ranlib
+ 
+ # gcc2
+ #  verified 28dec04 on linux-x86 (redhat 6.2 with gcc 2.95.2)
diff --git a/sci-libs/galib/files/galib-2.4.7-fix-c++14.patch b/sci-libs/galib/files/galib-2.4.7-fix-c++14.patch
new file mode 100644
index 000000000000..babc84b63524
--- /dev/null
+++ b/sci-libs/galib/files/galib-2.4.7-fix-c++14.patch
@@ -0,0 +1,85 @@
+Fix building with C++14, which errors out due to stricter two-phase lookup.
+See also: https://bugs.gentoo.org/show_bug.cgi?id=594504
+
+Patch by Peter Levine
+
+--- a/ga/GA1DArrayGenome.C
++++ b/ga/GA1DArrayGenome.C
+@@ -222,8 +222,8 @@
+   aset = new GAAlleleSet<T>[1];
+   aset[0] = s;
+ 
+-  initializer(GA1DArrayAlleleGenome<T>::DEFAULT_1DARRAY_ALLELE_INITIALIZER);
+-  mutator(GA1DArrayAlleleGenome<T>::DEFAULT_1DARRAY_ALLELE_MUTATOR);
++  GAGenome::initializer(GA1DArrayAlleleGenome<T>::DEFAULT_1DARRAY_ALLELE_INITIALIZER);
++  GAGenome::mutator(GA1DArrayAlleleGenome<T>::DEFAULT_1DARRAY_ALLELE_MUTATOR);
+   comparator(GA1DArrayAlleleGenome<T>::DEFAULT_1DARRAY_ALLELE_COMPARATOR);
+   crossover(GA1DArrayAlleleGenome<T>::DEFAULT_1DARRAY_ALLELE_CROSSOVER);
+ }
+@@ -238,8 +238,8 @@
+   for(int i=0; i<naset; i++)
+     aset[i] = sa.set(i);
+ 
+-  initializer(GA1DArrayAlleleGenome<T>::DEFAULT_1DARRAY_ALLELE_INITIALIZER);
+-  mutator(GA1DArrayAlleleGenome<T>::DEFAULT_1DARRAY_ALLELE_MUTATOR);
++  GAGenome::initializer(GA1DArrayAlleleGenome<T>::DEFAULT_1DARRAY_ALLELE_INITIALIZER);
++  GAGenome::mutator(GA1DArrayAlleleGenome<T>::DEFAULT_1DARRAY_ALLELE_MUTATOR);
+   comparator(GA1DArrayAlleleGenome<T>::DEFAULT_1DARRAY_ALLELE_COMPARATOR);
+   crossover(GA1DArrayAlleleGenome<T>::DEFAULT_1DARRAY_ALLELE_CROSSOVER);
+ }
+--- a/ga/GA2DArrayGenome.C
++++ b/ga/GA2DArrayGenome.C
+@@ -269,10 +269,10 @@
+   aset = new GAAlleleSet<T>[1];
+   aset[0] = s;
+ 
+-  initializer(GA2DArrayAlleleGenome<T>::DEFAULT_2DARRAY_ALLELE_INITIALIZER);
+-  mutator(GA2DArrayAlleleGenome<T>::DEFAULT_2DARRAY_ALLELE_MUTATOR);
+-  comparator(GA2DArrayAlleleGenome<T>::DEFAULT_2DARRAY_ALLELE_COMPARATOR);
+-  crossover(GA2DArrayAlleleGenome<T>::DEFAULT_2DARRAY_ALLELE_CROSSOVER);
++  GAGenome::initializer(GA2DArrayAlleleGenome<T>::DEFAULT_2DARRAY_ALLELE_INITIALIZER);
++  GAGenome::mutator(GA2DArrayAlleleGenome<T>::DEFAULT_2DARRAY_ALLELE_MUTATOR);
++  GAGenome::comparator(GA2DArrayAlleleGenome<T>::DEFAULT_2DARRAY_ALLELE_COMPARATOR);
++  GAGenome::crossover(GA2DArrayAlleleGenome<T>::DEFAULT_2DARRAY_ALLELE_CROSSOVER);
+ }
+ 
+ template <class T> 
+@@ -286,10 +286,10 @@
+   for(int i=0; i<naset; i++)
+     aset[i] = sa.set(i);
+ 
+-  initializer(GA2DArrayAlleleGenome<T>::DEFAULT_2DARRAY_ALLELE_INITIALIZER);
+-  mutator(GA2DArrayAlleleGenome<T>::DEFAULT_2DARRAY_ALLELE_MUTATOR);
+-  comparator(GA2DArrayAlleleGenome<T>::DEFAULT_2DARRAY_ALLELE_COMPARATOR);
+-  crossover(GA2DArrayAlleleGenome<T>::DEFAULT_2DARRAY_ALLELE_CROSSOVER);
++  GAGenome::initializer(GA2DArrayAlleleGenome<T>::DEFAULT_2DARRAY_ALLELE_INITIALIZER);
++  GAGenome::mutator(GA2DArrayAlleleGenome<T>::DEFAULT_2DARRAY_ALLELE_MUTATOR);
++  GAGenome::comparator(GA2DArrayAlleleGenome<T>::DEFAULT_2DARRAY_ALLELE_COMPARATOR);
++  GAGenome::crossover(GA2DArrayAlleleGenome<T>::DEFAULT_2DARRAY_ALLELE_CROSSOVER);
+ }
+ 
+ 
+--- a/ga/GA3DArrayGenome.C
++++ b/ga/GA3DArrayGenome.C
+@@ -322,8 +322,8 @@
+   aset = new GAAlleleSet<T>[1];
+   aset[0] = s;
+ 
+-  initializer(GA3DArrayAlleleGenome<T>::DEFAULT_3DARRAY_ALLELE_INITIALIZER);
+-  mutator(GA3DArrayAlleleGenome<T>::DEFAULT_3DARRAY_ALLELE_MUTATOR);
++  GAGenome::initializer(GA3DArrayAlleleGenome<T>::DEFAULT_3DARRAY_ALLELE_INITIALIZER);
++  GAGenome::mutator(GA3DArrayAlleleGenome<T>::DEFAULT_3DARRAY_ALLELE_MUTATOR);
+   comparator(GA3DArrayAlleleGenome<T>::DEFAULT_3DARRAY_ALLELE_COMPARATOR);
+   crossover(GA3DArrayAlleleGenome<T>::DEFAULT_3DARRAY_ALLELE_CROSSOVER);
+ }
+@@ -339,8 +339,8 @@
+   for(int i=0; i<naset; i++)
+     aset[i] = sa.set(i);
+ 
+-  initializer(GA3DArrayAlleleGenome<T>::DEFAULT_3DARRAY_ALLELE_INITIALIZER);
+-  mutator(GA3DArrayAlleleGenome<T>::DEFAULT_3DARRAY_ALLELE_MUTATOR);
++  GAGenome::initializer(GA3DArrayAlleleGenome<T>::DEFAULT_3DARRAY_ALLELE_INITIALIZER);
++  GAGenome::mutator(GA3DArrayAlleleGenome<T>::DEFAULT_3DARRAY_ALLELE_MUTATOR);
+   comparator(GA3DArrayAlleleGenome<T>::DEFAULT_3DARRAY_ALLELE_COMPARATOR);
+   crossover(GA3DArrayAlleleGenome<T>::DEFAULT_3DARRAY_ALLELE_CROSSOVER);
+ }
diff --git a/sci-libs/galib/galib-2.4.7-r1.ebuild b/sci-libs/galib/galib-2.4.7-r1.ebuild
new file mode 100644
index 000000000000..5209af1c4c9d
--- /dev/null
+++ b/sci-libs/galib/galib-2.4.7-r1.ebuild
@@ -0,0 +1,54 @@
+# Copyright 1999-2017 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+
+EAPI=6
+
+inherit toolchain-funcs
+
+MY_PV="${PV//\./}"
+
+DESCRIPTION="Library for genetic algorithms in C++ programs"
+HOMEPAGE="http://lancet.mit.edu/ga/"
+SRC_URI="http://lancet.mit.edu/ga/dist/galib${MY_PV}.tgz"
+
+LICENSE="BSD examples? ( GPL-2 )"
+SLOT="0"
+KEYWORDS="amd64 x86 ~amd64-linux ~x86-linux"
+IUSE="doc examples"
+
+S="${WORKDIR}/${PN}${MY_PV}"
+
+PATCHES=(
+	"${FILESDIR}/${PN}-2.4.7-fix-buildsystem.patch"
+	"${FILESDIR}/${PN}-2.4.7-fix-c++14.patch"
+	"${FILESDIR}/${PN}-2.4.7-Wformat-security.patch"
+)
+
+src_prepare() {
+	default
+	sed -e "s:/include:${EPREFIX}/usr/include:" \
+		-e "s:/lib:${EPREFIX}/usr/$(get_libdir):" \
+		-i makevars || die
+}
+
+src_compile() {
+	emake \
+		CXX="$(tc-getCXX)" \
+		AR="$(tc-getAR)" \
+		RANLIB="$(tc-getRANLIB)" \
+		lib
+	emake -C examples clean
+}
+
+src_install() {
+	dodir /usr/$(get_libdir)
+
+	use doc && HTML_DOCS+=( doc/. )
+	if use examples; then
+		dodoc -r examples
+		find "${ED%/}/usr/share/doc/${PF}/examples" -iname 'makefile*' -delete || die
+		docompress -x /usr/share/doc/${PF}/examples
+	fi
+
+	default
+}
diff --git a/sci-libs/galib/metadata.xml b/sci-libs/galib/metadata.xml
new file mode 100644
index 000000000000..c5d86554ee6d
--- /dev/null
+++ b/sci-libs/galib/metadata.xml
@@ -0,0 +1,13 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
+<pkgmetadata>
+	<maintainer type="project">
+		<email>sci@gentoo.org</email>
+		<name>Gentoo Science Project</name>
+	</maintainer>
+	<longdescription lang="en">
+		GAlib contains a set of C++ genetic algorithm objects. The library
+		includes tools for using genetic algorithms to do optimization in
+		any C++ program using any representation and genetic operators.
+	</longdescription>
+</pkgmetadata>