gentoo resync : 29.12.2022

5 files changed, 252 insertions, 2 deletions

diff --git a/sci-libs/dcmtk/Manifest b/sci-libs/dcmtk/Manifest
index f73d8d75495a..118989ac450f 100644
--- a/sci-libs/dcmtk/Manifest
+++ b/sci-libs/dcmtk/Manifest
@@ -1,3 +1,7 @@
+AUX dcmtk-3.6.5-rename-bundled-charls.patch 2913 BLAKE2B 246d283ccb98606faaee4ef6ad25368ee47e6c96ef44e334d774625b375788e5c1ae41ca3aa6048ff6c76b1ddaae242d3c783875fe7e9e9c740675e96d8a2495 SHA512 dce186372d22e7b5ae06d3fe623029e95b9cb40005716fc97cd7493ba4fd6c4694228d878941efd9a0f57b2424f713edbebb38ed607ed2e84b65a368f647bab6
 DIST dcmtk-3.6.5.tar.gz 6483626 BLAKE2B 6182ef207b42b16ee91e94397cc8a5b2d108435a30d4c86f0b7e39af91186604f16be07a75e176bf50575446abcab21b2f63158dc4e5f2cb6de3996a0881b295 SHA512 c0cf61b0095c5708709406bfef5e8bb82dd01dbf77df7f2af2118004920bda68218eb1e4174bf92941cdae0acdb275c886570dafd29476eee2eb815e9a82830a
-EBUILD dcmtk-3.6.5.ebuild 1919 BLAKE2B e334f7b963aa93cb55fd46f7fa5435d518d7276470143ecc78b1d7ac6805a54c8ef0a5f614b8677493821be495b37d367ea29274b315ac5f434f41b13f1d4689 SHA512 1b17a38ecc51b31d395286a7eac4caa898b05863653636546ab3f82bf03326c1ef9beed1e847fa695fb2926bbc4b01bc0eb3cd3cc8a7ac9ceec0ca7a72700ffe
+DIST dcmtk-3.6.7.tar.gz 6877857 BLAKE2B 242ba19ed3876b27c8eeb6917f9264911c951e91ab27d2ebd3e95ab5dcf55a0e18986cede87c8ab7e6280eafeb19fda120ccb2114d24a16f222b411b44cc28d8 SHA512 b9c227f496de65424256636fa7ad266affc6593f72c6849271da94837b68c93a5b8e056ecd09d46550b6ac0530c406ab9f71751d317a5fd4171a222f9fc9ca45
+EBUILD dcmtk-3.6.5-r1.ebuild 1945 BLAKE2B a40ee8472d2ff8f67d80a7cdacc2dcae82466e16326926712fd664474a4b4269275949797384603c5b5c5431bac5f076778b88140920f96bc903820fb4dd4176 SHA512 d9eaf46e4e071ba2c64cada1e64adb88d955d006af0b750f40f7c37abc051afcad1206bc9aab32a9c832cd37dfdad144667a9935e8475c4b7ba4f13055e2c16f
+EBUILD dcmtk-3.6.5.ebuild 1903 BLAKE2B 4c23e6ef59e7b471624b6f0d39be7b8a9e3ac702ff5c63c8562dd631c4a9c031f3a996f9c15a628ec5ab808101d44f01115c5ed50d55e1f997cbd618eeccb671 SHA512 0dc10bef0ce6901685bc959ed77f348db1ef1ed6ddb0576fa6d9b86856726d467bc6c85a5cffc5f794135c1013ecf801213a610d1638b95e2feddd84bc9bd9d7
+EBUILD dcmtk-3.6.7.ebuild 1905 BLAKE2B c4a6d201f2cb85441be5ee53b673cdd1e77004ef3827c908b40ed61f7f7b2851349ee2129b52a2b3e42db03011da63943207bb5a9821d66b9ce82a68344bde92 SHA512 3015277a8faf07802b90378708f4c1958947bbfd8540c4e855a0e62ad848ee65e52ecfaaedbeb721075cd95b4ecfa1eeffc78a3b19ca852eee0b5ebb7861bda1
 MISC metadata.xml 228 BLAKE2B aed5dcff29c27f92a26fb6756bc7ac8951564825a29dd244c02f697ddc0cc72a3171a360dc67db9d2fb3dcf51bcfe4078bb085c5ca0e343856819732a1aaa410 SHA512 34ff32136442a7884b3bacd8d838f962357f15cbbb4e172bbfe2f042e716313d5dfd29d29d38c4acab816a85803e2c94f98f1933c688cc76c2866454891257ad
diff --git a/sci-libs/dcmtk/dcmtk-3.6.5-r1.ebuild b/sci-libs/dcmtk/dcmtk-3.6.5-r1.ebuild
new file mode 100644
index 000000000000..b635fd5468e2
--- /dev/null
+++ b/sci-libs/dcmtk/dcmtk-3.6.5-r1.ebuild
@@ -0,0 +1,89 @@
+# Copyright 1999-2022 Gentoo Authors
+# Distributed under the terms of the GNU General Public License v2
+
+EAPI=8
+
+inherit cmake
+
+DESCRIPTION="The DICOM Toolkit"
+HOMEPAGE="https://dicom.offis.de/dcmtk.php.en"
+SRC_URI="https://dicom.offis.de/download/dcmtk/release/${P}.tar.gz"
+
+LICENSE="OFFIS"
+KEYWORDS="~amd64 ~arm ~arm64 ~ppc64 ~riscv ~x86"
+SLOT="0"
+IUSE="doc png ssl tcpd tiff +threads xml zlib"
+
+RDEPEND="
+	dev-libs/icu:=
+	png? ( media-libs/libpng:* )
+	ssl? ( dev-libs/openssl:0= )
+	tcpd? ( sys-apps/tcp-wrappers )
+	tiff? ( media-libs/tiff:0 )
+	xml? ( dev-libs/libxml2:2 )
+	zlib? ( sys-libs/zlib )
+"
+DEPEND="${RDEPEND}"
+BDEPEND="doc? ( app-doc/doxygen )"
+
+PATCHES=(
+	"${FILESDIR}/${P}-rename-bundled-charls.patch"
+)
+
+src_prepare() {
+	cmake_src_prepare
+
+	sed -e "s:share/doc/dcmtk:&-${PV}:" \
+		-e "s:DIR \"/:DIR \"/usr/:" \
+		-e "s:usr/etc:etc:" \
+		-e "s:/lib\":/$(get_libdir)\":" \
+		-e "s:COPYRIGHT::" \
+		-i CMakeLists.txt || die
+	sed -e 's:${CMAKE_INSTALL_PREFIX}/::' \
+		-i dcmwlm/data/CMakeLists.txt doxygen/CMakeLists.txt || die
+	# Temporary workaround: docs are not built with CMake
+	sed -i -e '/include/d' doxygen/Makefile.in || die
+
+	# fix -D deprecation warnings
+	sed -i -e "s|_BSD_SOURCE|_DEFAULT_SOURCE|g" \
+		"${S}"/config/configure.in \
+		"${S}"/CMakeLists.txt || die
+}
+
+src_configure() {
+	local mycmakeargs=(
+		-DCMAKE_INSTALL_SYSCONFDIR="${EPREFIX}/etc"
+		-DDCMTK_WITH_ICU=ON
+		-DDCMTK_WITH_TIFF=$(usex tiff)
+		-DDCMTK_WITH_PNG=$(usex png)
+		-DDCMTK_WITH_XML=$(usex xml)
+		-DDCMTK_WITH_ZLIB=$(usex zlib)
+		-DDCMTK_WITH_OPENSSL=$(usex ssl)
+		-DDCMTK_WITH_DOXYGEN=$(usex doc)
+		-DDCMTK_WITH_THREADS=$(usex threads)
+	)
+
+	cmake_src_configure
+
+	if use doc; then
+		cd "${S}"/doxygen || die
+		econf
+	fi
+}
+
+src_compile() {
+	cmake_src_compile
+
+	if use doc; then
+		emake -C "${S}"/doxygen
+	fi
+}
+
+src_install() {
+	doman doxygen/manpages/man1/*
+
+	if use doc; then
+		local HTML_DOCS=( "${S}"/doxygen/htmldocs/. )
+	fi
+	cmake_src_install
+}
diff --git a/sci-libs/dcmtk/dcmtk-3.6.5.ebuild b/sci-libs/dcmtk/dcmtk-3.6.5.ebuild
index d611928362a6..44b08cfa35d0 100644
--- a/sci-libs/dcmtk/dcmtk-3.6.5.ebuild
+++ b/sci-libs/dcmtk/dcmtk-3.6.5.ebuild
@@ -16,7 +16,6 @@ IUSE="doc png ssl tcpd tiff +threads xml zlib"
 
 RDEPEND="
 	dev-libs/icu:=
-	virtual/jpeg:0
 	png? ( media-libs/libpng:* )
 	ssl? ( dev-libs/openssl:0= )
 	tcpd? ( sys-apps/tcp-wrappers )
diff --git a/sci-libs/dcmtk/dcmtk-3.6.7.ebuild b/sci-libs/dcmtk/dcmtk-3.6.7.ebuild
new file mode 100644
index 000000000000..64387ea2536d
--- /dev/null
+++ b/sci-libs/dcmtk/dcmtk-3.6.7.ebuild
@@ -0,0 +1,88 @@
+# Copyright 1999-2022 Gentoo Authors
+# Distributed under the terms of the GNU General Public License v2
+
+EAPI=8
+
+inherit cmake
+
+DESCRIPTION="The DICOM Toolkit"
+HOMEPAGE="https://dicom.offis.de/dcmtk.php.en"
+SRC_URI="https://dicom.offis.de/download/dcmtk/release/${P}.tar.gz"
+
+LICENSE="OFFIS"
+KEYWORDS="~amd64 ~arm ~arm64 ~ppc64 ~riscv ~x86"
+SLOT="0"
+IUSE="doc png ssl tcpd tiff +threads xml zlib"
+
+RDEPEND="
+	dev-libs/icu:=
+	png? ( media-libs/libpng:* )
+	ssl? ( dev-libs/openssl:0= )
+	tcpd? ( sys-apps/tcp-wrappers )
+	tiff? ( media-libs/tiff:0 )
+	xml? ( dev-libs/libxml2:2 )
+	zlib? ( sys-libs/zlib )
+"
+DEPEND="${RDEPEND}"
+BDEPEND="doc? (
+	app-doc/doxygen
+	virtual/latex-base
+)"
+
+src_prepare() {
+	cmake_src_prepare
+
+	sed -e "s:share/doc/dcmtk:&-${PV}:" \
+		-e "s:DIR \"/:DIR \"/usr/:" \
+		-e "s:usr/etc:etc:" \
+		-e "s:/lib\":/$(get_libdir)\":" \
+		-e "s:COPYRIGHT::" \
+		-i CMakeLists.txt || die
+	sed -e 's:${CMAKE_INSTALL_PREFIX}/::' \
+		-i dcmwlm/data/CMakeLists.txt doxygen/CMakeLists.txt || die
+	# Temporary workaround: docs are not built with CMake
+	sed -i -e '/include/d' doxygen/Makefile.in || die
+
+	# fix -D deprecation warnings
+	sed -i -e "s|_BSD_SOURCE|_DEFAULT_SOURCE|g" \
+		"${S}"/config/configure.in \
+		"${S}"/CMakeLists.txt || die
+}
+
+src_configure() {
+	local mycmakeargs=(
+		-DCMAKE_INSTALL_SYSCONFDIR="${EPREFIX}/etc"
+		-DDCMTK_WITH_ICU=ON
+		-DDCMTK_WITH_TIFF=$(usex tiff)
+		-DDCMTK_WITH_PNG=$(usex png)
+		-DDCMTK_WITH_XML=$(usex xml)
+		-DDCMTK_WITH_ZLIB=$(usex zlib)
+		-DDCMTK_WITH_OPENSSL=$(usex ssl)
+		-DDCMTK_WITH_DOXYGEN=$(usex doc)
+		-DDCMTK_WITH_THREADS=$(usex threads)
+	)
+
+	cmake_src_configure
+
+	if use doc; then
+		cd "${S}"/doxygen || die
+		econf
+	fi
+}
+
+src_compile() {
+	cmake_src_compile
+
+	if use doc; then
+		emake -C "${S}"/doxygen
+	fi
+}
+
+src_install() {
+	doman doxygen/manpages/man1/*
+
+	if use doc; then
+		local HTML_DOCS=( "${S}"/doxygen/htmldocs/. )
+	fi
+	cmake_src_install
+}
diff --git a/sci-libs/dcmtk/files/dcmtk-3.6.5-rename-bundled-charls.patch b/sci-libs/dcmtk/files/dcmtk-3.6.5-rename-bundled-charls.patch
new file mode 100644
index 000000000000..5bb51fdc3273
--- /dev/null
+++ b/sci-libs/dcmtk/files/dcmtk-3.6.5-rename-bundled-charls.patch
@@ -0,0 +1,70 @@
+Upstream: https://git.dcmtk.org/?p=dcmtk.git;a=commitdiff;h=09afb527bb889932f919c28f47b08c84fe19ab32
+
+From 46b4b4c2d48612b60f27969db142599f56042a47 Mon Sep 17 00:00:00 2001
+From: Marco Eichelberg <dicom@offis.de>
+Date: Tue, 10 Nov 2020 12:31:00 +0100
+Subject: [PATCH] Renamed libcharls to libdcmtkcharls.
+
+Renamed the CharLS JPEG-LS library that is built into DCMTK from
+"charls" to "dcmtkcharls" to avoid a naming conflict with another
+installation of the CharLS library when building shared libraries.
+
+Thanks to Mathieu Malaterre <malat@debian.org> for the suggestion
+and the patch.
+---
+ dcmjpls/apps/CMakeLists.txt      | 2 +-
+ dcmjpls/libcharls/CMakeLists.txt | 4 ++--
+ dcmjpls/libcharls/intrface.h     | 2 +-
+ dcmjpls/libsrc/CMakeLists.txt    | 2 +-
+ 4 files changed, 5 insertions(+), 5 deletions(-)
+
+diff --git a/dcmjpls/apps/CMakeLists.txt b/dcmjpls/apps/CMakeLists.txt
+index 2a9a452..0cb3f53 100644
+--- a/dcmjpls/apps/CMakeLists.txt
++++ b/dcmjpls/apps/CMakeLists.txt
+@@ -8,5 +8,5 @@ endforeach()
+ 
+ # make sure executables are linked to the corresponding libraries
+ foreach(PROGRAM dcmcjpls dcmdjpls dcml2pnm)
+-  DCMTK_TARGET_LINK_MODULES(${PROGRAM} dcmjpls charls dcmimage dcmimgle dcmdata oflog ofstd ofstd)
++  DCMTK_TARGET_LINK_MODULES(${PROGRAM} dcmjpls dcmtkcharls dcmimage dcmimgle dcmdata oflog ofstd ofstd)
+ endforeach()
+diff --git a/dcmjpls/libcharls/CMakeLists.txt b/dcmjpls/libcharls/CMakeLists.txt
+index 0c5b143..ae0c017 100644
+--- a/dcmjpls/libcharls/CMakeLists.txt
++++ b/dcmjpls/libcharls/CMakeLists.txt
+@@ -2,6 +2,6 @@
+ include_directories("${dcmjpls_SOURCE_DIR}/libcharls" "${ofstd_SOURCE_DIR}/include")
+ 
+ # create library from source files
+-DCMTK_ADD_LIBRARY(charls header intrface jpegls)
++DCMTK_ADD_LIBRARY(dcmtkcharls header intrface jpegls)
+ 
+-DCMTK_TARGET_LINK_MODULES(charls ofstd oflog)
++DCMTK_TARGET_LINK_MODULES(dcmtkcharls ofstd oflog)
+diff --git a/dcmjpls/libcharls/intrface.h b/dcmjpls/libcharls/intrface.h
+index c8fdaa9..3aa27fd 100644
+--- a/dcmjpls/libcharls/intrface.h
++++ b/dcmjpls/libcharls/intrface.h
+@@ -10,7 +10,7 @@
+ #include "dcmtk/ofstd/ofstd.h"    /* for size_t */
+ #include "dcmtk/ofstd/ofdefine.h" /* for DCMTK_DECL_EXPORT */
+ 
+-#ifdef charls_EXPORTS
++#ifdef dcmtkcharls_EXPORTS
+ #define DCMTK_CHARLS_EXPORT DCMTK_DECL_EXPORT
+ #else
+ #define DCMTK_CHARLS_EXPORT DCMTK_DECL_IMPORT
+diff --git a/dcmjpls/libsrc/CMakeLists.txt b/dcmjpls/libsrc/CMakeLists.txt
+index 314face..bd928f8 100644
+--- a/dcmjpls/libsrc/CMakeLists.txt
++++ b/dcmjpls/libsrc/CMakeLists.txt
+@@ -4,4 +4,4 @@ include_directories("${dcmjpls_SOURCE_DIR}/include" "${ofstd_SOURCE_DIR}/include
+ # create library from source files
+ DCMTK_ADD_LIBRARY(dcmjpls djcparam djdecode djencode djrparam djcodecd djutils djcodece)
+ 
+-DCMTK_TARGET_LINK_MODULES(dcmjpls ofstd oflog dcmdata dcmimgle dcmimage charls)
++DCMTK_TARGET_LINK_MODULES(dcmjpls ofstd oflog dcmdata dcmimgle dcmimage dcmtkcharls)
+-- 
+2.1.4
+