gentoo auto-resync : 29:08:2022 - 10:46:12

5 files changed, 0 insertions, 121 deletions

diff --git a/sci-chemistry/Manifest.gz b/sci-chemistry/Manifest.gz
index fbbefa2fce1d..0b685cbb3d24 100644
--- a/sci-chemistry/Manifest.gz
+++ b/sci-chemistry/Manifest.gz
diff --git a/sci-chemistry/numbat/Manifest b/sci-chemistry/numbat/Manifest
deleted file mode 100644
index 52761be094e4..000000000000
--- a/sci-chemistry/numbat/Manifest
+++ /dev/null
@@ -1,4 +0,0 @@
-AUX numbat-0.999-gnuplot.patch 2048 BLAKE2B 662ff2337d8a56ba21d1037911dab787ce3faead57a692310e694be4435875c1c7b66a6b756b28c2a2bd8ee29c29b845b794c6f70720c9f7b31810cd8296a083 SHA512 dd646e8f6652a63cb4e1c97830a755629e45d20fa13431f628b66fe8a5062b7bd7ebacddb3dbcca5aeeac3ae0d89f59c61036c1a3639d25fe0426ada77a888bb
-DIST Numbat-0.999.tar.gz 1791471 BLAKE2B 7f6536533fdf6bc3860dc1a7c03ade4896e782c5ecadf1c6a7d70896f4c6ef9f0571796c171012497d7b47b3342c215a5302ed210d7dde3ecdbef170c3f55dbc SHA512 0887f77905bbb476b0d12a7015d5d5745023740acc974ea9cd452de7d38a75a92e6090015127588b38ba62353d38c2be20f57be5df3011b51050c4934dfd206c
-EBUILD numbat-0.999-r2.ebuild 1007 BLAKE2B e65d5f9eb640f0f9f87a928b63b61e21f1944f7f57799dd98459749fe503ec5812a8190bed700f2747325220f3a54d935f16200adf5177180ceb11eab5c971a2 SHA512 f9f92be8144897cc537d218a944b88a98c240933153b7d1e2a5ba16e8657fe3cdc8b4dac2eaf33b411c8849e0dfbe6036898b59dc4fc81544041062bd0a29cde
-MISC metadata.xml 853 BLAKE2B 2ab072c2f2afc1af3d37ddd39e7cfb38bc2b88b962e30889392add26ce34805262c7cc317a2b22f23550c15916f9ea012f2e65fec31c8a5d62828351e510a00e SHA512 b08a5455fc22e7da72cf7122238356059d12746a18c8704e35de8b4485e3e3c1b6d3fb7601b5c7698494189d7763357fdcd3225c5694d3313b597dfd11c18892
diff --git a/sci-chemistry/numbat/files/numbat-0.999-gnuplot.patch b/sci-chemistry/numbat/files/numbat-0.999-gnuplot.patch
deleted file mode 100644
index 942f5871e50b..000000000000
--- a/sci-chemistry/numbat/files/numbat-0.999-gnuplot.patch
+++ /dev/null
@@ -1,42 +0,0 @@
- src/error_analysis.c | 20 ++++++++++----------
- 1 file changed, 10 insertions(+), 10 deletions(-)
-
-diff --git a/src/error_analysis.c b/src/error_analysis.c
-index eb86a6f..c0edf5f 100644
---- a/src/error_analysis.c
-+++ b/src/error_analysis.c
-@@ -848,11 +848,11 @@ void write_sanson_mac(FILE * F, char * name_plot, char * name_world, int number_
-     }
- 
-     fprintf(F, "reset\n");
--    fprintf(F, "set noxtics\n");
--    fprintf(F, "set noytics\n");
-+    fprintf(F, "unset xtics\n");
-+    fprintf(F, "unset ytics\n");
-     fprintf(F, "set angles degrees\n");
--    fprintf(F, "set nogrid\n");
--    fprintf(F, "set noborder\n");
-+    fprintf(F, "unset grid\n");
-+    fprintf(F, "unset border\n");
-     //fprintf(F, "width=40\n");
-     //fprintf(F, "height=width*(3./4.)\n");
-     //fprintf(F, "set xrange [-width : width]\n");
-@@ -867,12 +867,12 @@ void write_sanson_mac(FILE * F, char * name_plot, char * name_world, int number_
-     fprintf(F, "YC(lat,lon)=(lon-long0)*cos(lat)\n");
-     fprintf(F, "plot '%s'  using (YC($2,$1)):(XC($2,$1)) t '' with lines lw 0.1 lt -1", name_world);
-     for(i = 0; i < number_of_tensor; i++){
--        fprintf(F, ", '%s' using (YC($%d,$%d)):(XC($%d,$%d)) t '' with points %d", name_plot,
--                6*i+2, 6*i+1, 6*i+2, 6*i+1, 3*i+1);
--        fprintf(F, ", '%s' using (YC($%d,$%d)):(XC($%d,$%d)) t '' with points %d", name_plot,
--                6*i+4, 6*i+3, 6*i+4, 6*i+3, 3*i+2);
--        fprintf(F, ", '%s' using (YC($%d,$%d)):(XC($%d,$%d)) t '' with points %d", name_plot,
--                6*i+6, 6*i+5, 6*i+6, 6*i+5, 3*i+3);
-+        fprintf(F, ", '%s' using (YC($%d,$%d)):(XC($%d,$%d)) t '' with points", name_plot,
-+                6*i+2, 6*i+1, 6*i+2, 6*i+1);
-+        fprintf(F, ", '%s' using (YC($%d,$%d)):(XC($%d,$%d)) t '' with points", name_plot,
-+                6*i+4, 6*i+3, 6*i+4, 6*i+3);
-+        fprintf(F, ", '%s' using (YC($%d,$%d)):(XC($%d,$%d)) t '' with points", name_plot,
-+                6*i+6, 6*i+5, 6*i+6, 6*i+5);
-     }
-     fprintf(F, "\n");
-     //fprintf(F, "pause 2\n");
diff --git a/sci-chemistry/numbat/metadata.xml b/sci-chemistry/numbat/metadata.xml
deleted file mode 100644
index 273753c203e5..000000000000
--- a/sci-chemistry/numbat/metadata.xml
+++ /dev/null
@@ -1,19 +0,0 @@
-<?xml version="1.0" encoding="UTF-8"?>
-<!DOCTYPE pkgmetadata SYSTEM "https://www.gentoo.org/dtd/metadata.dtd">
-<pkgmetadata>
-  <maintainer type="project">
-    <email>sci-chemistry@gentoo.org</email>
-    <name>Gentoo Chemistry Project</name>
-  </maintainer>
-  <longdescription>
-Numbat is a user friendly software that fits dX-tensor to a set of PCS 
-measurements and a structure from a PDB file. It has also been designed to 
-assist in the semi automatic process of PCS assignment. A detailed description 
-of the software can be found in this publication: 
-
-Christophe Schmitz, Mitchell J. Stanton-Cook, Xun-Cheng Su, Gottfried Otting, 
-and Thomas Huber (2008). Numbat: an interactive software tool for fitting 
-Δχ-tensors to molecular coordinates using pseudocontact shifts. Journal of 
-Biomolecular NMR. 41:179-189.
-</longdescription>
-</pkgmetadata>
diff --git a/sci-chemistry/numbat/numbat-0.999-r2.ebuild b/sci-chemistry/numbat/numbat-0.999-r2.ebuild
deleted file mode 100644
index ddfec41ed12b..000000000000
--- a/sci-chemistry/numbat/numbat-0.999-r2.ebuild
+++ /dev/null
@@ -1,56 +0,0 @@
-# Copyright 1999-2021 Gentoo Authors
-# Distributed under the terms of the GNU General Public License v2
-
-EAPI=7
-
-inherit autotools
-
-MY_PN="Numbat"
-MY_P="${MY_PN}-${PV}"
-
-DESCRIPTION="New user-friendly method built for automatic dX-tensor determination"
-HOMEPAGE="http://www.nmr.chem.uu.nl/~christophe/numbat.html"
-SRC_URI="http://comp-bio.anu.edu.au/private/downloads/Numbat/${MY_P}.tar.gz"
-S="${WORKDIR}"/${MY_P}
-
-SLOT="0"
-LICENSE="GPL-3"
-KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux"
-
-DEPEND="
-	gnome-base/libglade:2.0
-	sci-libs/gsl:=
-	x11-libs/gtk+:2
-"
-RDEPEND="
-	${DEPEND}
-	sci-chemistry/molmol
-	sci-chemistry/pymol
-	sci-visualization/gnuplot
-"
-BDEPEND="virtual/pkgconfig"
-
-PATCHES=(
-#	"${FILESDIR}"/${P}-glade.patch
-	"${FILESDIR}"/${P}-gnuplot.patch
-)
-
-src_prepare() {
-	default
-
-	sed \
-		-e '/COPYING/d' \
-		-e "s:doc/numbat:share/doc/${PF}:g" \
-		-i Makefile.am src/common.h || die
-
-	rm missing || die
-
-	emake distclean
-	eautoreconf
-}
-
-src_install() {
-	docompress -x /usr/share/doc/${PF}
-
-	default
-}