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authorV3n3RiX <venerix@redcorelinux.org>2019-02-10 15:40:27 +0000
committerV3n3RiX <venerix@redcorelinux.org>2019-02-10 15:40:27 +0000
commit6bc2e4d7c5906e46a8f275a876ead6ec41aca5bb (patch)
treecee0a97398040001220ece3cd48c3d568bcddb4a /sci-chemistry
parent1db00cc6e94b90c08090bb5b8c406622946c4ae5 (diff)
gentoo resync : 10.02.2019
Diffstat (limited to 'sci-chemistry')
-rw-r--r--sci-chemistry/Manifest.gzbin17567 -> 17557 bytes
-rw-r--r--sci-chemistry/aqua/Manifest2
-rw-r--r--sci-chemistry/aqua/aqua-3.2-r3.ebuild8
-rw-r--r--sci-chemistry/aria/Manifest2
-rw-r--r--sci-chemistry/aria/aria-2.3.2_p20130826.ebuild4
-rw-r--r--sci-chemistry/cns/Manifest4
-rw-r--r--sci-chemistry/cns/cns-1.2.1-r8.ebuild4
-rw-r--r--sci-chemistry/cns/cns-1.3_p7-r1.ebuild4
-rw-r--r--sci-chemistry/molscript/Manifest2
-rw-r--r--sci-chemistry/molscript/molscript-2.1.2-r2.ebuild4
-rw-r--r--sci-chemistry/msms-bin/Manifest2
-rw-r--r--sci-chemistry/msms-bin/msms-bin-2.6.1-r1.ebuild5
-rw-r--r--sci-chemistry/namd/Manifest2
-rw-r--r--sci-chemistry/namd/namd-2.10.ebuild4
-rw-r--r--sci-chemistry/procheck/Manifest2
-rw-r--r--sci-chemistry/procheck/procheck-3.5.4-r3.ebuild13
-rw-r--r--sci-chemistry/pymol-plugins-caver/Manifest2
-rw-r--r--sci-chemistry/pymol-plugins-caver/pymol-plugins-caver-2.1.2.ebuild4
-rw-r--r--sci-chemistry/shelx/Manifest2
-rw-r--r--sci-chemistry/shelx/shelx-20141228.ebuild4
-rw-r--r--sci-chemistry/vmd/Manifest4
-rw-r--r--sci-chemistry/vmd/vmd-1.9.2.ebuild4
-rw-r--r--sci-chemistry/vmd/vmd-1.9.3.ebuild4
-rw-r--r--sci-chemistry/votca-csg/Manifest6
-rw-r--r--sci-chemistry/votca-csg/votca-csg-1.5.ebuild100
-rw-r--r--sci-chemistry/votca-csg/votca-csg-9999.ebuild5
-rw-r--r--sci-chemistry/votca-csgapps/Manifest2
-rw-r--r--sci-chemistry/votca-csgapps/votca-csgapps-1.5.ebuild33
-rw-r--r--sci-chemistry/votca-ctp/Manifest5
-rw-r--r--sci-chemistry/votca-ctp/votca-ctp-1.5.ebuild71
-rw-r--r--sci-chemistry/votca-ctp/votca-ctp-9999.ebuild33
-rw-r--r--sci-chemistry/votca-xtp/Manifest5
-rw-r--r--sci-chemistry/votca-xtp/votca-xtp-1.5.ebuild73
-rw-r--r--sci-chemistry/votca-xtp/votca-xtp-9999.ebuild19
34 files changed, 380 insertions, 58 deletions
diff --git a/sci-chemistry/Manifest.gz b/sci-chemistry/Manifest.gz
index 2b901bfd725d..7485ddebb6fb 100644
--- a/sci-chemistry/Manifest.gz
+++ b/sci-chemistry/Manifest.gz
Binary files differ
diff --git a/sci-chemistry/aqua/Manifest b/sci-chemistry/aqua/Manifest
index c1c4e4fb772c..8b898e424fa6 100644
--- a/sci-chemistry/aqua/Manifest
+++ b/sci-chemistry/aqua/Manifest
@@ -1,5 +1,5 @@
AUX aqua-3.2-flags.patch 4211 BLAKE2B 032048ea0f08aa798758489beda88aa0f07635e7ee965d25791b73a2995224920392c7eaf52b0da97d4e0df70df9901d5dd915c2a0adc499e6e17160e2fac467 SHA512 059cea5403fb4cb01b0fcd4d2a2fe4b4aea725e9362a6188ccd3756ced35e324cda5efb21d3ad2a95a842e9d83f8e728a16b36e4b6a479ae32da8816d7eafdfc
DIST aqua-3.2-nmr_manual.tar.gz 632031 BLAKE2B 1f595a111af4b5e91fc059b5af590a6c37a44654fcae42e6003b40cf7fdf542cb772d3ef25bf2475455ce8638cd0aebcbbc8c66bb57688ce919af2eac9b535cb SHA512 9b125b03507afebf15301c893efffae9be4e9695b9c577e5c2a80e83b620d04b4c27e867adf06336afa1556eddc96aa97de936028e503b1e85e156542664da0f
DIST aqua3.2.tar.gz 688408 BLAKE2B 898e0e3bbc4ff7b6ce8a8128ce6ffef45db607c74e2d78a70cefc26818d39049e4d18159b65250a3651112f64318ccce838037e563d3a985be7ef369d89b594e SHA512 1939f662a68122da613368aa106d7a31525903014420035eba9d10c3bd99b04d654d156328d308673003854233a02c1da48c036f3187fa1f0f303cc5928edd6a
-EBUILD aqua-3.2-r3.ebuild 2071 BLAKE2B c01432ca52c98c5d597c1b63ff47137f85c076ac3d6fd3aadfbb03c78928b7e8a6ca2085783b8dc88cef3765f230c579ca0d3bc96cdeed947ca0fb18a196ef1a SHA512 4135a83c758759697fba718388473dfbc6893844db980b19174fe167a9e029aa273a04b04376404cf6a88378dda3e2ac7c2f8f3f526b75765f7f2abd054b802c
+EBUILD aqua-3.2-r3.ebuild 2087 BLAKE2B 053412cfb8802a1fd07e2ab53e19d8cca8f422063bd0d64723e2152b4d2fce4fc4597db2fd906b08b899937fac27c390abf73e1638f0a77f356e3bf86dea7d7f SHA512 1d5e6cdefb415613ade4170837b0092772a2c76bbb29b4c10e6ef75044f380c724371509fc5ec50144828bc6dcbd04b282135a0147561b424267331ad79b802a
MISC metadata.xml 265 BLAKE2B d5a98b9309829a0486c4b8a4336c2d24a0fe34e926d52afd0cc87e16fcc887ca4c18851e58afb33866823121fa8f221a90e0d726dbd85552a4caf66cf03b7b4a SHA512 470f6c178e88c4e83afa46d5e901a45fc2427a779ae832df7fa2d6e25e9e8b4ce77cd3a8fe191e6242d6df3b673f0de6b4f90f1e147aa8b8dd566f18163cc73a
diff --git a/sci-chemistry/aqua/aqua-3.2-r3.ebuild b/sci-chemistry/aqua/aqua-3.2-r3.ebuild
index 74e4e60416f7..78d987ec1460 100644
--- a/sci-chemistry/aqua/aqua-3.2-r3.ebuild
+++ b/sci-chemistry/aqua/aqua-3.2-r3.ebuild
@@ -1,4 +1,4 @@
-# Copyright 1999-2017 Gentoo Foundation
+# Copyright 1999-2019 Gentoo Authors
# Distributed under the terms of the GNU General Public License v2
EAPI=6
@@ -29,9 +29,11 @@ PATCHES=(
pkg_nofetch() {
elog "Please visit http://www.ebi.ac.uk/thornton-srv/software/PROCHECK/download.html"
- elog "And follow the instruction for downloading ${PN}${PV}.tar.gz -> ${DISTDIR}/${PN}${PV}.tar.gz."
+ elog "And follow the instructions for downloading the following into your DISTDIR"
+ elog "directory:"
+ elog " ${PN}${PV}.tar.gz"
if use doc; then
- elog "nmr_manual.tar.gz -> ${DISTDIR}/${P}-nmr_manual.tar.gz"
+ elog " nmr_manual.tar.gz -> ${P}-nmr_manual.tar.gz"
fi
}
diff --git a/sci-chemistry/aria/Manifest b/sci-chemistry/aria/Manifest
index 8e0e9a87437b..2b830596d521 100644
--- a/sci-chemistry/aria/Manifest
+++ b/sci-chemistry/aria/Manifest
@@ -1,3 +1,3 @@
DIST aria2.3.2_08.26.2013.tar.gz 1878602 BLAKE2B 3044192853c0ed0653d20fea959d3b01321f559845c555289658f93b65e9148f8cd0f59619e8690887b2811d613e6cc2f67b67af7d84ade4b8fc18403367086c SHA512 a6d8c45218f5d494174587a5f8f1feec940ac8cc4cd7b707dac65b2378219ecf27967e70807e6cb7ae22a7d4aec7239af763f077ad7183c078b1991cac71bc3e
-EBUILD aria-2.3.2_p20130826.ebuild 1918 BLAKE2B 12b418e5949ee99892a5cff811e3d8dfe08b1f99cf425df8f0dde976fbae39cb31f5767b2173f8f3756cb428f18ef917e5f2d02546d4edbd28801c693eaca61d SHA512 97f30da0e83cee0e9ed20c0d81b020fa55d3b62c60f25014b4b83888e3004f01b94216ba13257b8fe2fb92156391f3c08845d6f1cf5684739a1fc6d412ecd712
+EBUILD aria-2.3.2_p20130826.ebuild 1930 BLAKE2B 129dfba9d6e9209e2d88a6c1357dd247d5089e18b9393f75fb23b2c1dcd98ea80768f20ba9f09e9b6b97213ab5140075c7d484aeb9cb4fa5ef116d248ad29644 SHA512 7a752e8c87b300b55ce0b50c0a3c45df26fc34f3205b55231f685ab76548077b7f70392c260cf23f5d09b91d2f7f172432771315227a4cecb069199596e33cea
MISC metadata.xml 271 BLAKE2B a446884cbe7a6789e0bcd82759f57bf1ab7b29c5ab714057ffa821c90f799d1fa9f9310c187ee4c3a8ae2476f6ea9d15f368045779f1581e68d02802c61c884c SHA512 3e6e6047a29e07123b81279cae1de17bc4bd4c3d7d8a8d26560114a18185f473d038fc220fa81c7213fa203ce197bad8b1c272d9b7e41cd770a953fa6308ff92
diff --git a/sci-chemistry/aria/aria-2.3.2_p20130826.ebuild b/sci-chemistry/aria/aria-2.3.2_p20130826.ebuild
index 84f75d11ed6e..c06c8d979bb6 100644
--- a/sci-chemistry/aria/aria-2.3.2_p20130826.ebuild
+++ b/sci-chemistry/aria/aria-2.3.2_p20130826.ebuild
@@ -1,4 +1,4 @@
-# Copyright 1999-2016 Gentoo Foundation
+# Copyright 1999-2019 Gentoo Authors
# Distributed under the terms of the GNU General Public License v2
EAPI=5
@@ -41,7 +41,7 @@ S="${WORKDIR}/${MY_P}"
pkg_nofetch(){
einfo "Go to http://aria.pasteur.fr/archives/aria2.3.2.tar.gz/view, download ${A}"
- einfo "and place it in ${DISTDIR}"
+ einfo "and place it into your DISTDIR directory."
}
pkg_setup() {
diff --git a/sci-chemistry/cns/Manifest b/sci-chemistry/cns/Manifest
index 6bd6b5ca2dea..fb9785137012 100644
--- a/sci-chemistry/cns/Manifest
+++ b/sci-chemistry/cns/Manifest
@@ -11,6 +11,6 @@ DIST aria2.3.1.tar.gz 1833973 BLAKE2B 4bf51626a4283452e75a834d0160a4204efd5a35ee
DIST aria2.3.2.tar.gz 1836270 BLAKE2B 725b0db2b5de36d1b132c5073b8a91f26fa19b48549f4c899041a2b140127524f660c4faeb8c35e94d3d19c24b0252f379de0e85c8fb08b86fc7834252239fb9 SHA512 009a1d0079f5cc162dc732749ddd2b33297268f0d988b2f37bda4ed50c7764ceef7ae5b56b322c7ac79427a4a2a92d1239199891445cb5e2b3d0908ed670e2aa
DIST cns_solve_1.21_all-mp.tar.gz 32748040 BLAKE2B 7c82fd9cddc56a00d791d6d5525491b91525962f000c2fdfb02a3ab81305c0c026c115c2328dac99ac7b30146ca591620f4f42019938fb49e7ce52235b281121 SHA512 383324d771570b501e388fba9bf20789f483a3a4044eb3334c7a7e7835e0c345b784e0d344b22d20a10fe1c33ed21c9013adb1af5912808af480b96abe275857
DIST cns_solve_1.3_all.tar.gz 64167735 BLAKE2B 3901a597eb0deac7f2fad173e15d78bfcd753c4019739e22c8851194c9446305cd92bcff73f7f06dc21b6d055852863993412296e1e555ef0b3b730052934cbd SHA512 4fe73820e96999bb33a59ff6da979794628552f49bc03cdebcb9439b57e6042b92190e04bb7e4079157adf06a6facc5c16b8ae91621bd24a4b35ee382e53ae37
-EBUILD cns-1.2.1-r8.ebuild 6584 BLAKE2B 83117af05029b6fc0d35f93e3b4a83e95c6f1b7ea9993da5ca79ef9adbe54eb0686384039501b260e065f13b7839730389b5179c458ea99dbe2a4d9e83c2ff46 SHA512 1b998dae6f3228bf56d66af3bdaa5fcfbb167de571506d7f1c5037cc73d1eff23f31f49fe89ed1defd05e2289f63f7a718b3b39a63bf06bd68a37fd91bfda832
-EBUILD cns-1.3_p7-r1.ebuild 5810 BLAKE2B 3a73528b624e62e89151864dd16ea9cfeffb8c8ff89ee248d7e3b5620f2f75680b004f09f530f4c5a0c99c63355a3646db76ca27732404397de6ede54edc230c SHA512 cb0537ba0dd690864019641369dad0b62399a6beed2f60b97b4e46cb83d1451fbf7ceb965db17fc793958c5865de50edb5ca20b34dcd5762c5417a805bfbbb81
+EBUILD cns-1.2.1-r8.ebuild 6595 BLAKE2B 4a1b1f74950f5795a1fb78631808d3b9cff8cb5beb4a2c3bc939e2813fd3805e4a79a94d7903add989231185e23fef4dfffdc1efa531a1694ef1f82e82b91fe7 SHA512 7984a1aa41357c54363ab69480ce0324c89998adfa6085fa4c03c47d101bd82c6fe5e71154360d2583af0c63921222bbf70bcb2a6939771ed44e9fa8c16c6b07
+EBUILD cns-1.3_p7-r1.ebuild 5821 BLAKE2B d8e730c053d96c3321e60f7724fb61de96b4b6b1f720a4c97c8f6c03b6b44b3a5a9fce22f252606c097ffcfebbca2745225f0cbaf75ef1a4e4a21af055790366 SHA512 01befafeacfa8fe2450e0e5090c67d041813c362f50c4deb1ca3e0e5801b793b86b5acc7f9bb4f0e72baeb259fd40f3a6eb620890182774b82db40bc04695997
MISC metadata.xml 954 BLAKE2B 69065a98205d1c37abcc868279491caf3fa82fc209f25b8570385302a7efb14f1e13e23eedaae5db86fecdd56c9cf3d5bfeb0e425dd824c3f1fa5150a9641aad SHA512 af24c501f427f9473a9ef8ec90dfd14b2abb0856e8bde8bb1c664fe49a23032895c4d28d06112791b78880be1ef9b781efe60c26bee5d8e9a40a40b41713159b
diff --git a/sci-chemistry/cns/cns-1.2.1-r8.ebuild b/sci-chemistry/cns/cns-1.2.1-r8.ebuild
index a4b67cba44d3..c9d9a80f36af 100644
--- a/sci-chemistry/cns/cns-1.2.1-r8.ebuild
+++ b/sci-chemistry/cns/cns-1.2.1-r8.ebuild
@@ -1,4 +1,4 @@
-# Copyright 1999-2014 Gentoo Foundation
+# Copyright 1999-2019 Gentoo Authors
# Distributed under the terms of the GNU General Public License v2
EAPI=5
@@ -34,7 +34,7 @@ pkg_nofetch() {
use aria && elog "and http://aria.pasteur.fr/"
elog "and place these files:"
elog ${A}
- elog "in ${DISTDIR}."
+ elog "into your DISTDIR directory."
}
get_fcomp() {
diff --git a/sci-chemistry/cns/cns-1.3_p7-r1.ebuild b/sci-chemistry/cns/cns-1.3_p7-r1.ebuild
index cf86379c44be..327d14b2488e 100644
--- a/sci-chemistry/cns/cns-1.3_p7-r1.ebuild
+++ b/sci-chemistry/cns/cns-1.3_p7-r1.ebuild
@@ -1,4 +1,4 @@
-# Copyright 1999-2013 Gentoo Foundation
+# Copyright 1999-2019 Gentoo Authors
# Distributed under the terms of the GNU General Public License v2
EAPI=5
@@ -34,7 +34,7 @@ pkg_nofetch() {
use aria && elog "and http://aria.pasteur.fr/"
elog "and place these files:"
elog ${A}
- elog "in ${DISTDIR}."
+ elog "into your DISTDIR directory."
}
get_fcomp() {
diff --git a/sci-chemistry/molscript/Manifest b/sci-chemistry/molscript/Manifest
index 30c5660ec90b..c4d12f363599 100644
--- a/sci-chemistry/molscript/Manifest
+++ b/sci-chemistry/molscript/Manifest
@@ -4,5 +4,5 @@ AUX 2.1.2-prll.patch 409 BLAKE2B 83eefcd062c9904a06a69ccafa9da14578f102af96ad1b3
AUX fix-makefile-shared.patch 2051 BLAKE2B 145edf9dc11ee0f59325fcc3e2f981de03aeaa582bea06ca80406cc88ce38971590b687aa9dd40b37fb8edd07c9b30a0f81aa20ab38dcdb02378a407ba068878 SHA512 0c12bd5aea0a6175b7647ed61ae139113329058c42cfb56105ee35af35bdab9f61adfe635a1c3322dbff00ddfcee06383bbd6bd048cc7ded1961f3997a527358
AUX glutbitmap.h 845 BLAKE2B e5c5a6fed84021a35e132301c06efa9b877fc475a1230a58c93e9e24fb0b220cea1bcb68d411ed17897877dd3b9c4e3d6a1646906b0f09819449e6321e8f108a SHA512 a11e8c23472ed8950c8b56fdfd57ddd9c6539f427437ab26a2d3561ad388ca24a36029dee9ff6b8af759eeadf89fbd45dd10279d8089e6978eec07858624c7da
DIST molscript-2.1.2.tar.gz 412497 BLAKE2B ca28cf90cfbd1314351abd0c32e4a4012f2f6f178537e12918942f3c5e21e6875d045d46d76e645b4e9982d6d0784029b3d26eb17bb65aa486ecbea70842d9b4 SHA512 0f82936da3123770c0fdb703094dbb5289cc39e9f9ffd034d8dba563f8d615788f67040d38158ac2f203b480c5838a7d8e71ca07bc5098181c1e3cfea26703a4
-EBUILD molscript-2.1.2-r2.ebuild 1389 BLAKE2B cccb057490775272bc67e4195628b95f59fbdba89645bbd461e86e681a5c834b1d6503ee9bb2e187ef324e17bff6c74fc4f1930f3779249ba9608cc50e37c87d SHA512 588e960f0ab9c4678ba16a196803293b0ef7e59c5d2f20972caa64af438e3c502a03abcf8b860fa2357dd87344762375a07a212b9492fc304f2b095194b22849
+EBUILD molscript-2.1.2-r2.ebuild 1401 BLAKE2B 2c06899f86ce8c75bdc9081866fcf5b81406c2d1aee06284f56157a6a05da03606e98adf12b1ed634945a4da1b5741a6350313ab0a2b366f000abb14262c6b42 SHA512 48ae8900e68d17f886cd1d8ab0f42a154b569cc0368149c223788c6a65423bc963e0631ad90e4ea1e8406badfd1c710d1cb7b6f6d13a4b89cd248062ade0b9b3
MISC metadata.xml 271 BLAKE2B a446884cbe7a6789e0bcd82759f57bf1ab7b29c5ab714057ffa821c90f799d1fa9f9310c187ee4c3a8ae2476f6ea9d15f368045779f1581e68d02802c61c884c SHA512 3e6e6047a29e07123b81279cae1de17bc4bd4c3d7d8a8d26560114a18185f473d038fc220fa81c7213fa203ce197bad8b1c272d9b7e41cd770a953fa6308ff92
diff --git a/sci-chemistry/molscript/molscript-2.1.2-r2.ebuild b/sci-chemistry/molscript/molscript-2.1.2-r2.ebuild
index 87c16c05a6d7..0628b53b087d 100644
--- a/sci-chemistry/molscript/molscript-2.1.2-r2.ebuild
+++ b/sci-chemistry/molscript/molscript-2.1.2-r2.ebuild
@@ -1,4 +1,4 @@
-# Copyright 1999-2015 Gentoo Foundation
+# Copyright 1999-2019 Gentoo Authors
# Distributed under the terms of the GNU General Public License v2
EAPI=5
@@ -31,7 +31,7 @@ RESTRICT="fetch"
pkg_nofetch() {
elog "Please visit ${HOMEPAGE}"
elog "and get ${A}."
- elog "Place it in ${DISTDIR}"
+ elog "Place it into your DISTDIR directory."
}
src_prepare() {
diff --git a/sci-chemistry/msms-bin/Manifest b/sci-chemistry/msms-bin/Manifest
index 60158f543607..c3d88f6df9a9 100644
--- a/sci-chemistry/msms-bin/Manifest
+++ b/sci-chemistry/msms-bin/Manifest
@@ -1,4 +1,4 @@
DIST msms_i86Linux2_2.6.1.tar.gz 112762 BLAKE2B 8ceb55eef29234b38d631ea4aa63c7f11e4a606b8f14526412ed64d2ac9174604fd6ecb8c11c8e7629fd570b2298ee81d4f364c75ee64a41b1bc9fd9c661277b SHA512 814a5b5fa760b57c773f6900d42cacc5b68a2bf16d8792aa63cfa779aeabdab4e05064b86de6fb2551194543db925d83e07cf4ef74be8c08935ef5ecc8dcfe73
DIST msms_i86_64Linux2_2.6.1.tar.gz 593147 BLAKE2B b66430303f732bc66c62577950671a947c2a81efa139857a255522fa5dc73f042b571e7756e76246aaeac30cb8cf3ac7383645b35a70bb08a15572de1c5fb2af SHA512 630da1ae57b2d8d072247b650636a71e5ef6f07a245c8c4d07b26e20618d9c5dbaffcff563d0504b9b899ca263ba5f3458447f0e649bbfb895aea34305c1c8f8
-EBUILD msms-bin-2.6.1-r1.ebuild 1054 BLAKE2B 6dc62885906e5b91e824878e13b81bc43f0279d83ba0e452d16cc476249005176d12011cfaf3f77c3d69d7024f76ef7fa6449c432095137f4b73169058f23022 SHA512 855c9613f269e8b76a353bf7a5ac0ce479e1cd2302671f9d17d3e3090f01ade5dcb5ffd18fbfb3cb23ca840abd151d8ae77be822833dd61f8ababca9ad918f7e
+EBUILD msms-bin-2.6.1-r1.ebuild 1075 BLAKE2B f324e286a4a567c34a7c4b1b6887eda3bcb53cc06b74c00bead500a4552cd367458d56d09e67cbdb84f2770486a531ea3a95d68536188995dd5ffd6fd427251c SHA512 be2c1c95d2a63c3471f47e6aac6bb086eb01fd4c23c98c53ada2ae5dbbd1db39fe0728a5439172b1a0163c1c20320ac48dda6feca22ce047a7571f08fae2a41d
MISC metadata.xml 342 BLAKE2B e5edc8e8d81d013be77e02718bb4fe50564226ec1c028daad92c3c5b882b2eb840be28ce78dfc83ab3a58e1a428b55caed99971b9b84a8bec23349952496eea1 SHA512 2dbd8b2bdf37d4a2d4127cb373db2c6ff8fc4de6bf294e4518f1d424115860c0b083d538935a8b1a54543b396b968985e46a7ca293367ee1a0b462d11639b7ab
diff --git a/sci-chemistry/msms-bin/msms-bin-2.6.1-r1.ebuild b/sci-chemistry/msms-bin/msms-bin-2.6.1-r1.ebuild
index aaca48a6b1a8..13eebfcdc23e 100644
--- a/sci-chemistry/msms-bin/msms-bin-2.6.1-r1.ebuild
+++ b/sci-chemistry/msms-bin/msms-bin-2.6.1-r1.ebuild
@@ -1,4 +1,4 @@
-# Copyright 1999-2012 Gentoo Foundation
+# Copyright 1999-2019 Gentoo Authors
# Distributed under the terms of the GNU General Public License v2
EAPI=4
@@ -22,7 +22,8 @@ S="${WORKDIR}"
QA_PREBUILT="${EROOT#/}opt/bin/.*"
pkg_nofetch() {
- einfo "Please download ${A} from http://mgltools.scripps.edu/downloads#msms and place it to ${DISTDIR}"
+ einfo "Please download ${A} from http://mgltools.scripps.edu/downloads#msms and"
+ einfo "place it into your DISTDIR directory."
}
src_install() {
diff --git a/sci-chemistry/namd/Manifest b/sci-chemistry/namd/Manifest
index c8df375c725e..385e3ddc7291 100644
--- a/sci-chemistry/namd/Manifest
+++ b/sci-chemistry/namd/Manifest
@@ -1,5 +1,5 @@
AUX namd-2.10-gentoo.patch 4637 BLAKE2B 0439e424f3d2a73378c68052f9d9dd69dc9590b9f83fa4062d4abc156b3b682f0e8a2cffd8a1e1f751f8dfd71d067c0234ba56946773ca9139e73c57e775c631 SHA512 35afda71ad7567d1b2c4c1f4073792d5977edc997ba7a43cf71c8ed32308062edc5cb4923202d599d59ade2f98602a0fac21138ba205a3bf6b681c86a61411f8
AUX namd-2.7-iml-dec.patch 520 BLAKE2B c16430d1161b9d7e3faf22257d84ff1090eccf906a296f91d4ec0731fa89d23334d5c39c7988f8ac6d5f5020d403d4491dadbe34b1e9800ada81ad18b2448b7d SHA512 50ddf91bcb0e370a98d6fe5329f00ec9a8016f0178e342b086f4b9d4130a41e525ed9d960e92dc83b4372f135ce9d454bef836d3e215fb6ac7933999278efa37
DIST NAMD_2.10_Source.tar.gz 9200234 BLAKE2B fe348a21309b279640da81ed4dd5447c1e6e467866270dc1730b26d02d5518b45bd662211c3cbe228bd8d9885edb062cf5d245d634bcd38773c36873febd2ee6 SHA512 3712a03841fad76c502ac4e41469162ff78e6152560d0f6855d61d2b5583241a661e2a3e7446029b56a6f6f1100f25cb51b2c3df6571542397961d3bb625bc92
-EBUILD namd-2.10.ebuild 2641 BLAKE2B 4041268bb8a73fedb5b9bde50f732afeaf9cfebb7705c2b4194071680ee79c3d1e731715f320da720dc0694c8ee7ebc8a64a4ed04231441f7656b220b6e326e4 SHA512 6c3f7f5e6847780bd0de73506665f531cf8433bddb560c7777d9dd8036baa255921b21ab756606ac8625defeb4bb22244f12a311dad20b51d6323e70c475ca4b
+EBUILD namd-2.10.ebuild 2651 BLAKE2B 49f86253643a8d54f844c3edf47d53ac0ece857d47fead5b12b93885f68d671ec74b0ddb0d3eb998c4806dd41550edbc9950edf658ca83eece5069392bb87a70 SHA512 643d3300a3256dd28c04e2070aaff6bd5720473b7d69f16ac5a641a76ff2c6d98be4e467220b6f4ef00243eeb2198b1d7b8a9a50b781c0281caac9bca7a995ff
MISC metadata.xml 376 BLAKE2B 04d5215096c154f2414dc0475c6510a66b6978bd85169311d4b17303bafea893f8e3c2afb83080d72492c5dc82a62b2522ca079e300c917c00e439da932fee68 SHA512 578a3221496eb1470d9fcac9e784f62bb39591448a35a24e1881b5be69473689770bbc928c5779b76bed8c657b1e44d929093e6a39812d135199e37a0e8938e2
diff --git a/sci-chemistry/namd/namd-2.10.ebuild b/sci-chemistry/namd/namd-2.10.ebuild
index 30cf905505e0..96b58d22a0aa 100644
--- a/sci-chemistry/namd/namd-2.10.ebuild
+++ b/sci-chemistry/namd/namd-2.10.ebuild
@@ -1,4 +1,4 @@
-# Copyright 1999-2017 Gentoo Foundation
+# Copyright 1999-2019 Gentoo Authors
# Distributed under the terms of the GNU General Public License v2
EAPI=6
@@ -45,7 +45,7 @@ pkg_nofetch() {
einfo "Please download ${MY_PN}_${PV}_Source.tar.gz from"
einfo "${NAMD_DOWNLOAD}"
einfo "after agreeing to the license and then move it to"
- einfo "${DISTDIR}"
+ einfo "your DISTDIR directory."
einfo "Be sure to select the ${PV} version!"
echo
}
diff --git a/sci-chemistry/procheck/Manifest b/sci-chemistry/procheck/Manifest
index a9fa95fbab46..70593b6047cf 100644
--- a/sci-chemistry/procheck/Manifest
+++ b/sci-chemistry/procheck/Manifest
@@ -3,5 +3,5 @@ AUX procheck-3.5.4-ldflags.patch 1649 BLAKE2B 64506db2dbe1eba43dfc07bca233d57364
DIST procheck-3.5.4-README 6585 BLAKE2B c61606848f30728b67d2ab51e0beadec1c30aaa0ca65a68834bff3ed3e3f466e34a0e4b64323e80cce9cee83854650ebe0805abf0509c0a9154bf08e3e0a2d6b SHA512 c6eff94cef9b67fd61884e88fa77ec381553d4dba53f477023738e1e44a6191c4241b14543ee7ecb93b049f16f262db2a09cf5d1a63248057633aab290f1f82a
DIST procheck-3.5.4-manual.tar.gz 517840 BLAKE2B 33c5da5888bcd263e900cf2839f9287373e032fdde234e0375af061ec1c588d1ea5d2718da2a050da8060ba4003748a8fef3ff35b22f424c1cf6a1892aec0fe6 SHA512 0fa9c7d50b7ca43c626d5261c524166938d3a92be1d02221721bc7ce7e91ac4919e7200b946ce563f9bb696d7dab9588c1d1b31a4d551cafa2f2bce4931a212c
DIST procheck-3.5.4.tar.gz 522013 BLAKE2B be6764bc741ec3f868aee349fc7e23608c612758029d0b745c421f40b47c896dd48de84ee7df6d09a64a20695bd5a1ed0a96464e6dcaf44de03da1ae231787f8 SHA512 1dd78b53070484fbcdca51001fd147ab13fd5e51b3d1da54fd529531917c31012393751ee514f0c79d579b17a1701dde04f81b1c9ac27b2b835a43fa96785ecc
-EBUILD procheck-3.5.4-r3.ebuild 1687 BLAKE2B 3df4bc2e08ae6847995258c2640ecd044ec5bea0bf7817744f28d4a35aa9d8e80de36ded759ef7552f3bf679072883deb395fbf882de64d48ad05bedd1e7abe5 SHA512 abc659dbe5947b16259e05128c5e0607fdbe3c251595b7c5589502c8d6465264bfec243820abec345980d66cfe0b3eaa8183a41aeb2e2a8a81a929b0128364e7
+EBUILD procheck-3.5.4-r3.ebuild 1717 BLAKE2B ec8ef86ca7e9deade0d2c31f5d213ef447e55aa3eb825f7297746be00f6a4df66856af7e670ca24d9809d4ec90c6e81b110dc7a15333dad24a16fd3b720c7e3e SHA512 ff2774d4d1f6545988f67526fdcc97654a1ae38f3ec4863234e7ab52517fc22f90a931a449e2a95bf60ad814dab797311c96de0d85e92642acad8bb2160f59ea
MISC metadata.xml 271 BLAKE2B a446884cbe7a6789e0bcd82759f57bf1ab7b29c5ab714057ffa821c90f799d1fa9f9310c187ee4c3a8ae2476f6ea9d15f368045779f1581e68d02802c61c884c SHA512 3e6e6047a29e07123b81279cae1de17bc4bd4c3d7d8a8d26560114a18185f473d038fc220fa81c7213fa203ce197bad8b1c272d9b7e41cd770a953fa6308ff92
diff --git a/sci-chemistry/procheck/procheck-3.5.4-r3.ebuild b/sci-chemistry/procheck/procheck-3.5.4-r3.ebuild
index 4b188e5a9824..cc536d671b84 100644
--- a/sci-chemistry/procheck/procheck-3.5.4-r3.ebuild
+++ b/sci-chemistry/procheck/procheck-3.5.4-r3.ebuild
@@ -1,4 +1,4 @@
-# Copyright 1999-2017 Gentoo Foundation
+# Copyright 1999-2019 Gentoo Authors
# Distributed under the terms of the GNU General Public License v2
EAPI=6
@@ -25,11 +25,12 @@ S="${WORKDIR}/${PN}"
pkg_nofetch() {
elog "Please visit http://www.ebi.ac.uk/thornton-srv/software/PROCHECK/download.html"
- elog "And follow the instruction for downloading."
- elog "Files should be stored in following way"
- elog "${PN}.tar.gz -> ${DISTDIR}/${P}.tar.gz"
- elog "README -> ${DISTDIR}/${P}-README"
- use doc && elog "manual.tar.gz -> ${DISTDIR}/${P}-manual.tar.gz"
+ elog "and follow the instruction for downloading."
+ elog "Files should be renamed in the following way before being copied to your"
+ elog "DISTDIR directory:"
+ elog " ${PN}.tar.gz -> ${P}.tar.gz"
+ elog " README -> ${P}-README"
+ use doc && elog " manual.tar.gz -> ${P}-manual.tar.gz"
}
PATCHES=(
diff --git a/sci-chemistry/pymol-plugins-caver/Manifest b/sci-chemistry/pymol-plugins-caver/Manifest
index 5388ae4253d2..b176f1d33aae 100644
--- a/sci-chemistry/pymol-plugins-caver/Manifest
+++ b/sci-chemistry/pymol-plugins-caver/Manifest
@@ -1,3 +1,3 @@
DIST Caver2_1_2_pymol_plugin.zip 5698331 BLAKE2B e1accfaea6faf1e8c545b88c965228ccb62710d4015ff681506971feba6bd18a4a8b0b6e6caf621c99830ba529a6ec17873cdd3d5e52ad6dc6f67d9457e4eb87 SHA512 9d28e059bb20f30cf6a0d25ed2eb080dcf9dbb753e9d4578d95e293b31c5cf5fe23d5177dccdb79c192ab3e65bb484b6eb22b26c267637b125404f871e01a52c
-EBUILD pymol-plugins-caver-2.1.2.ebuild 1288 BLAKE2B ce2e6c424bee9349df90469712a966233287dd6c982a1adb00c659eead5d1f00f03a1a95bac7c49b22acd4cae49289e335a41fcc9d525bb4979547a0ec064a9a SHA512 7afa7038ef1fdbdc04120f15ac85a58152429d8f3cd03408c67355ffc6c825e4accc6f503b2522c7702851db421f46f3a28f7d8ce070c02848ba01e24c871d79
+EBUILD pymol-plugins-caver-2.1.2.ebuild 1299 BLAKE2B 3576dc6757df9537906fc53bd19cfbe2e5bec4e53baa6e11ecd0d13da02c02eb866c88d197745c497ce5ff2139a62fe07a0a2a684358a5b2b625c0b32bfd560d SHA512 15934c90998123000c56eca22d6a7da299be97e0f8ae544991d442b4e8cc6b637ad0286e5bf2008b1ccb5ddd21b8f7f7fe08eff17f11af43abe26abfe48759cd
MISC metadata.xml 271 BLAKE2B a446884cbe7a6789e0bcd82759f57bf1ab7b29c5ab714057ffa821c90f799d1fa9f9310c187ee4c3a8ae2476f6ea9d15f368045779f1581e68d02802c61c884c SHA512 3e6e6047a29e07123b81279cae1de17bc4bd4c3d7d8a8d26560114a18185f473d038fc220fa81c7213fa203ce197bad8b1c272d9b7e41cd770a953fa6308ff92
diff --git a/sci-chemistry/pymol-plugins-caver/pymol-plugins-caver-2.1.2.ebuild b/sci-chemistry/pymol-plugins-caver/pymol-plugins-caver-2.1.2.ebuild
index ffc1c59074aa..7da3317b59bf 100644
--- a/sci-chemistry/pymol-plugins-caver/pymol-plugins-caver-2.1.2.ebuild
+++ b/sci-chemistry/pymol-plugins-caver/pymol-plugins-caver-2.1.2.ebuild
@@ -1,4 +1,4 @@
-# Copyright 1999-2017 Gentoo Foundation
+# Copyright 1999-2019 Gentoo Authors
# Distributed under the terms of the GNU General Public License v2
EAPI=5
@@ -34,7 +34,7 @@ S="${WORKDIR}/${MY_P}"/linux_mac
pkg_nofetch() {
elog "Download ${A}"
elog "from ${HOMEPAGE}. This requires registration."
- elog "Place tarballs in ${DISTDIR}."
+ elog "Place tarballs into your DISTDIR directory."
}
src_install() {
diff --git a/sci-chemistry/shelx/Manifest b/sci-chemistry/shelx/Manifest
index 257bf462dbf7..775ffdc94cee 100644
--- a/sci-chemistry/shelx/Manifest
+++ b/sci-chemistry/shelx/Manifest
@@ -16,5 +16,5 @@ DIST shelxt_amd64.bz2 8862210 BLAKE2B 9ed422923af05a21933ebc53fd15223291e6672a8c
DIST shelxt_x86.bz2 4441488 BLAKE2B 5b51964c24a24af6c96acca547efad75b95a7896550bf3e8de6a6811f6879a28ff4f5cb1f08a01fd022774a6ea1f4e13c98529eeebfc6548de4879faafff2f3a SHA512 83027d24d58863030a284e5e573df27db760ce61f7c8d7da5741471bd814256ae5ade1316aa3e262a54c4c4fb6ad231dacfcef043c3279d381d2969e0b73dd14
DIST shredcif_amd64.bz2 461442 BLAKE2B 547335d13a57a22693f361183bac8d8f9564202bb219b8a419949ce2d9487f940fa5d5b840c2b2fe50adce0b0ff79a780e660757373d27d888b1bb545f9bf900 SHA512 8097b6285d3e9269989663e52a4d903b279f9cdd0a5650c91d605dd324c62361de619c0873968a3178d3c125f59a9b448465a09542e2582779fbb8cca1f9ebf7
DIST shredcif_x86.bz2 461442 BLAKE2B 547335d13a57a22693f361183bac8d8f9564202bb219b8a419949ce2d9487f940fa5d5b840c2b2fe50adce0b0ff79a780e660757373d27d888b1bb545f9bf900 SHA512 8097b6285d3e9269989663e52a4d903b279f9cdd0a5650c91d605dd324c62361de619c0873968a3178d3c125f59a9b448465a09542e2582779fbb8cca1f9ebf7
-EBUILD shelx-20141228.ebuild 1093 BLAKE2B fef0b656bffa33a4be13e34d101b1e55f4eec5d6ae790971a6919e0a753f3c28783e0b6480641d9815204fd84d1b4d2495dd0538746a021189dec6d4503918e3 SHA512 4e35de5c607eebb0484e8144cb34e03040efe733e7fbeace80d99efca1aecca1a13a1bfe1a01c6ad20d7f7c0e14a318603dc839ef5172752920c759325119919
+EBUILD shelx-20141228.ebuild 1104 BLAKE2B 0a956ee2c0afa625a865dc7277d5ba14c493818cb66cb97012dba3bddd3a129b89b1d85f5c32bfbe903293f34a0e3b38cd7932dafa24f4f93848a2ffb1f83de2 SHA512 5344381a22c23b847b845395dc4985a5838ba282635e97dcb440fcc9815d1794e42e21501574cd9a0b7b294b58e3825af6c3fd8a0f23c0a981c2dc2d044cd679
MISC metadata.xml 271 BLAKE2B a446884cbe7a6789e0bcd82759f57bf1ab7b29c5ab714057ffa821c90f799d1fa9f9310c187ee4c3a8ae2476f6ea9d15f368045779f1581e68d02802c61c884c SHA512 3e6e6047a29e07123b81279cae1de17bc4bd4c3d7d8a8d26560114a18185f473d038fc220fa81c7213fa203ce197bad8b1c272d9b7e41cd770a953fa6308ff92
diff --git a/sci-chemistry/shelx/shelx-20141228.ebuild b/sci-chemistry/shelx/shelx-20141228.ebuild
index d2b279bf8d1e..156c08fefdd4 100644
--- a/sci-chemistry/shelx/shelx-20141228.ebuild
+++ b/sci-chemistry/shelx/shelx-20141228.ebuild
@@ -1,4 +1,4 @@
-# Copyright 1999-2015 Gentoo Foundation
+# Copyright 1999-2019 Gentoo Authors
# Distributed under the terms of the GNU General Public License v2
EAPI=5
@@ -47,7 +47,7 @@ pkg_nofetch() {
elog "Download ${A} and rename them to"
use amd64 && elog "*_amd64.bz2"
use x86 && elog "*_x86.bz2"
- elog "and place renamed tarballs in ${DISTDIR}."
+ elog "and place renamed tarballs into your DISTDIR directory."
}
src_install() {
diff --git a/sci-chemistry/vmd/Manifest b/sci-chemistry/vmd/Manifest
index 20742d1d35b9..72040c83b5ce 100644
--- a/sci-chemistry/vmd/Manifest
+++ b/sci-chemistry/vmd/Manifest
@@ -4,6 +4,6 @@ DIST vmd-1.9.2-gentoo-patches.tar.xz 14896 BLAKE2B eb7c7fb982602f37bd8374bf8458a
DIST vmd-1.9.2.src.tar.gz 34903084 BLAKE2B f7f7048ef7bb72a8b0dcae955c7f90691085158c38a59229d5b929a4b52d3148bdb2f40084cf8c4544f01cb8bcb57de1d98a90bd17568a07c4ebb8f6985cec9b SHA512 b232b743d4ea97dcf76e3005e1c8716d7138602edc078c4846026ab67759c8559af956182cb1acf3c85890db10b6f658ac9c269d432f2595612cf376d6d505ef
DIST vmd-1.9.3-gentoo-patches.tar.xz 14804 BLAKE2B 64e5df40ed88c23c924d32636495f0383590f91dbb714e64c73551072bb50d72b4e5f188fb2da58d32e84b4bc96ff0297d7ff1bf02b0481198901c4e12e4ee59 SHA512 5d506d4df5ca4a3edb33d77aeeb440fcb4750a250c77103b99f385f356eb9d71d954173b981d3a50f7a714cfc872587e5040868904e50fa1f6fd69d7e4d9f1b1
DIST vmd-1.9.3.src.tar 129566720 BLAKE2B 848f3280d51765dcd18722dd233e0cdee3b7c0ac3dd48324260ebe1604ba781ca0a1fe4cae6652501d23d5d41712020e17dbb6bc21a1856eb3289a4aab6b774b SHA512 0502df1e8b60c570ca88b779b4153acfaa599a78df53fa96fca36301bab902864118332b5524ae7d170d3a9e429cf1e13d69e1197268b5e841afc0bb56a737ba
-EBUILD vmd-1.9.2.ebuild 7144 BLAKE2B 3b1e2aa3757a8ead72dabc13eea926af6bcc43fee3ce065270fbf80fb4fdd4bad41f7542d6175f9f753f711a98208c89499219e4236ce8046436a6584b88bab8 SHA512 d3432b08ea1b5888a05e49911daabaaac64f265940fb639c1677532c7828431735e89119ca450f8983ddf961857a866ba5e2cb288b960b8f386746e87ae9411e
-EBUILD vmd-1.9.3.ebuild 7096 BLAKE2B 7083785d75ebfedc432b1a3b8d4912bf080a5a39b738f24f993a432b0b1581e5dfad53303cfae0a5d5d026aecec9df98dfa59dbb2a82bdc58cacd84e2b9383f3 SHA512 99ccba436d9ceb8ea643d51cf7f3b89ab830db1e3d552832a62ea5194f59ac32f101938fa1f680bd4552a62e203841d4dc5beae78114f12405fcdb08194ae7f4
+EBUILD vmd-1.9.2.ebuild 7155 BLAKE2B 734137c1a02d76da109d35faf11f29138a8e48dda6d84b7151f93f2095481127f136a5f8954a80912c85ae7031a01c3374783a042bf5461fd9d1049b577a082b SHA512 3f9fc1f4cc8f6f5031de74a8211db2a9e11d07de110689832d408c343a307ba25efa354f5862d4e6d8d06d3d18b567820401fc9fcdc8818f65a33ea24a3c657b
+EBUILD vmd-1.9.3.ebuild 7110 BLAKE2B d8ad6f495aaacdc4727e2c0e5d950a9670478aba7b55e62ed7074f06ad26151468f0f55a0786ce9dba80a181e7c36e912eaeaaa9ad7ae660739c65f482337c97 SHA512 c0eba398b6a815a59c9d8708dc796273ad3211ddc8e02aee8333f00f42f095c4d8999aaa246665ceb9282d2053c0631dc3c8ed7b60981d88ff9f8a2badf6b89a
MISC metadata.xml 778 BLAKE2B 6c4202950f57a4d7a3004e966c761325a0a31ab19fe06a6bd69882bd685e41424953104ff653c03d6cbbcb60bb9aba45fbcec43cd228c4bb57fcb1c63a2bd881 SHA512 b967b71fb9f1b47a9d3b69e6958dfb0314a9f071dade7ed1876e91dfa73188748faf11ef832d240a71745b36a30422bde79de2e9ff8e5ec6b6da4b11b40d19c9
diff --git a/sci-chemistry/vmd/vmd-1.9.2.ebuild b/sci-chemistry/vmd/vmd-1.9.2.ebuild
index 347a8c9a751f..4bc9360f009b 100644
--- a/sci-chemistry/vmd/vmd-1.9.2.ebuild
+++ b/sci-chemistry/vmd/vmd-1.9.2.ebuild
@@ -1,4 +1,4 @@
-# Copyright 1999-2017 Gentoo Foundation
+# Copyright 1999-2019 Gentoo Authors
# Distributed under the terms of the GNU General Public License v2
EAPI=5
@@ -61,7 +61,7 @@ pkg_nofetch() {
elog "${VMD_DOWNLOAD}"
elog "after agreeing to the license and get"
elog "https://dev.gentoo.org/~jlec/distfiles/${P}-gentoo-patches.tar.xz"
- elog "Place both in ${DISTDIR}"
+ elog "Place both into your DISTDIR directory"
}
src_prepare() {
diff --git a/sci-chemistry/vmd/vmd-1.9.3.ebuild b/sci-chemistry/vmd/vmd-1.9.3.ebuild
index 9a92a88134e7..c1480738aa46 100644
--- a/sci-chemistry/vmd/vmd-1.9.3.ebuild
+++ b/sci-chemistry/vmd/vmd-1.9.3.ebuild
@@ -1,4 +1,4 @@
-# Copyright 1999-2018 Gentoo Authors
+# Copyright 1999-2019 Gentoo Authors
# Distributed under the terms of the GNU General Public License v2
EAPI=5
@@ -61,7 +61,7 @@ pkg_nofetch() {
elog "${VMD_DOWNLOAD}"
elog "after agreeing to the license and get"
elog "https://dev.gentoo.org/~jlec/distfiles/${P}-gentoo-patches.tar.xz"
- elog "Place both in ${DISTDIR}"
+ elog "Place both into your DISTDIR directory"
}
src_prepare() {
diff --git a/sci-chemistry/votca-csg/Manifest b/sci-chemistry/votca-csg/Manifest
index 2c8806e1dad9..581f3e6230ae 100644
--- a/sci-chemistry/votca-csg/Manifest
+++ b/sci-chemistry/votca-csg/Manifest
@@ -1,10 +1,14 @@
DIST votca-csg-1.4.1.tar.gz 347702 BLAKE2B 8c98804bafd75148fa72a9e119d4448ab9b04fb6f305e1e162a18013871d03778873a50670ce06bb218fc063f51ad67efc4a182c2d7bb46f91b59e30181b71d6 SHA512 87f2798c9b5f2d82ae1c158238f7a3b7007c7ceb7ce82503f0b002f605f2cc0b5ca4c8ef24fab571efae63a81e7a60bc476b5433962c239de4f5d42bae3c10ea
DIST votca-csg-1.4.tar.gz 346527 BLAKE2B 8f0a41f9aa9fd865e2e544d5fd587d93d631edc2dabab8edfc3461582da2e0401a266a42be1c0f1e6647502cdcccee55b5bba891aa156394012b8b5e1b06f7e8 SHA512 26318644c7af2dfa1b81242b27ffac98f2180c3a1f05581bc50a00f644cec4b19ffbaf41c9d941a4714171b56ae93fe41f1a663cd0593ae2b0be2da379119d9b
+DIST votca-csg-1.5.tar.gz 429164 BLAKE2B da04bd9ce8e879e9a961006256e03d160fa49fe77aa2f1eff0986b338296b04137bb087ecfabb7f2fc855b0ccd83dc4ddddfd65c43303bf5f2eef0519d27b0ec SHA512 c5a77ded3c9b2582494bea55b464689d566d4155713af823dccc6999f98438444d51fae3948144f82c2aaf3914eee740fe21e8828af689d37ab0b5ffea0605fa
DIST votca-csg-manual-1.4.1.pdf 1282641 BLAKE2B 370b7c8997649555fd2360b999cf381c340a74c3747afda23d0e9d346367cc6d14d4e9a0e9ac82184945427d30050dd623dd1b6d8218c6ff3d2f17331987aaae SHA512 e89f41af05eaeb9ea499e8625cc98e2632ec647ec2d8c9c9052dcd4d2935d082b29b51495514e3e06e73ce42b8cda7017fc523a013569378e2bc86bf88ad32d4
DIST votca-csg-manual-1.4.pdf 1281983 BLAKE2B 5659c2e327ba7bb00fac15adfb578288d546b509366863f593776a62dd3064662535d4fd525f1063f5ccaf47446822f13fefd7f66aa9d68cd1a4a7c99d66a790 SHA512 2e1f4a4375d83df9bd357d4d17e79d26a3a31c9177f008de86721427ffc6f43a5000ec840691108b52a8aecf962321ba6363cd975c7445d7230ee5b0b151b3fa
+DIST votca-csg-manual-1.5.pdf 1273566 BLAKE2B edfa2adb942d968cf79499e89342b7aaab64edfbfb6e02f76a66201df0920a58acc17bf4e2e4846d104519df163223c27f283cc5798ec7b64d9317a7728ff8c4 SHA512 da298ab0c27000ccf7fb5793c4252c4e17a969709db2649a5acb56af6208b954312c46a2ea8399cdb879b699e72a0ded0b2fe1bcd26431c6625f36b09c0267a5
DIST votca-csg-tutorials-1.4.1.tar.gz 6339417 BLAKE2B e9acf8e421f6fce4d97be2d51fb559979c6fd3e6b042525cedf32cadeab1dddc5b1aaf80bbbfd387da3bce71672759c2e84d317c789f616dc71834c72a581fff SHA512 896ec9d6b2537a06301046a74c1957708eb96d9854b3ec855fe3457208c142f6fb26a03e323a2644862a1efd0030fcceb1189f73655b984462f0f7127a02de90
DIST votca-csg-tutorials-1.4.tar.gz 6348417 BLAKE2B 612fcbc4457a57be74e5306bf86d6e031ea8cd55ebe3f4d246c0876e272e6e6dd535c8dd2f24f7593cb1ef31fbc18111269d29cb69120368ddef7b1b7d25825c SHA512 f3eb28a133ebc04eed07f84d5962943cb9c547c1099638127f15e0015dfdf3f0b25aab4c97d009d6040bf1d69d408cc178edd6e803d33bf1d831e12dca0671c7
+DIST votca-csg-tutorials-1.5.tar.gz 5947774 BLAKE2B d497f1e9282c4cacc070d09d901ad8f5d3042ab3a279aa4d1c3bcd3184dc22231d1f2a75ba0ffe245e6f6300fb740e562b24c8039594ec01307491a6068b55f6 SHA512 00447380fa887178ad02cc4e1425a04fc2fd2babdd4790d387fcd4aa2734dc14dacf4b4444d420937aa0a5b53e90741b44f9a4bca31bdcdae10fbfb8323e9848
EBUILD votca-csg-1.4.1.ebuild 3204 BLAKE2B e447a6859d7ee4d722701f96634667529bd183f10dd4affeb2713023edfe52ab73988df7ef912963bd154b893bd2d401d2fd110a729040a2a2c52ec5fd44985c SHA512 df94c127269df2a2eaa9643005eeeae6925b458fbb0cb4d1661757a49e5ab4926a613c532e4df4475b34768e904d2388270c868c9ad675cd110e2b1737153e3d
EBUILD votca-csg-1.4.ebuild 3191 BLAKE2B 93981bf3302b4c0feaaf1e45005df343ab5e12011a461e0f9729a9e6d50f1268fb016ce2bbe397a2b673fb0172a9971bc9e67fb806fa9a56fb7ab4e05235bd56 SHA512 ddeed3f96f097e73ad3593daebab448ae992a3f0d4ba9d46b9027c79c9654457ba3611af51049741f8ff04c0f8425eb097a6115f75d1ec7704f48c46a71ea088
-EBUILD votca-csg-9999.ebuild 2540 BLAKE2B 605ea77ddd320c1e0af4c93468261e3a44ef49fa1073568d64521a1557f5cdbd18fbf66e82be235b2e221adddacbc731fde63233d2ecb05e37528d0ce16be79c SHA512 932e5be7cf66118e246a56fa4420d4a5df07fc1ebb82ce6a5331b3ca71eace4ac79a7a84bc5186515e7bbd6856de6c604bc8b1351020146d466f4bd229f7446c
+EBUILD votca-csg-1.5.ebuild 2540 BLAKE2B 7391ae1af857c92b688fab507417c875189725d8f121296aaefccecc903501cc6c50561b0a7a4f834d5713f2bdd75b2325594fbbc32e6d0a0d814cf5c7ca7b14 SHA512 fc36ac2de479e2766722b3eb64d8f4eb43233c9625c67124d2ec583e21e22f1c77d6bee2a71d9c3b35451eeb0c6ddc729f4726e8b56f7e45b2c64a9f45fd94ae
+EBUILD votca-csg-9999.ebuild 2540 BLAKE2B 7391ae1af857c92b688fab507417c875189725d8f121296aaefccecc903501cc6c50561b0a7a4f834d5713f2bdd75b2325594fbbc32e6d0a0d814cf5c7ca7b14 SHA512 fc36ac2de479e2766722b3eb64d8f4eb43233c9625c67124d2ec583e21e22f1c77d6bee2a71d9c3b35451eeb0c6ddc729f4726e8b56f7e45b2c64a9f45fd94ae
MISC metadata.xml 676 BLAKE2B b3f2e43f5cb505876216b0a329410c9cef1b44a9bbd7e1c61faa4acd00dbe87ea0cebb00ed78dc00b9e1d2b08b95e3c40d25fecc0738c992a3f933e430f94e2b SHA512 14ecd498eeeed1576923d8da9bc5dc98e47c1d162173b7f2419ad367fa84e227555bd0365709be8a456dc5388ea6fa6734fa7df3c82fd4efcd1cf3460c7e12a1
diff --git a/sci-chemistry/votca-csg/votca-csg-1.5.ebuild b/sci-chemistry/votca-csg/votca-csg-1.5.ebuild
new file mode 100644
index 000000000000..7aad54413e78
--- /dev/null
+++ b/sci-chemistry/votca-csg/votca-csg-1.5.ebuild
@@ -0,0 +1,100 @@
+# Copyright 1999-2019 Gentoo Authors
+# Distributed under the terms of the GNU General Public License v2
+
+EAPI=6
+
+CMAKE_MAKEFILE_GENERATOR="ninja"
+
+inherit bash-completion-r1 cmake-utils multilib
+
+IUSE="doc examples extras +gromacs hdf5"
+PDEPEND="extras? ( ~sci-chemistry/${PN}apps-${PV} )"
+if [ "${PV}" != "9999" ]; then
+ SRC_URI="https://github.com/${PN/-//}/archive/v${PV}.tar.gz -> ${P}.tar.gz
+ doc? ( https://github.com/${PN/-//}-manual/releases/download/v${PV}/${PN}-manual-${PV}.pdf )
+ examples? ( https://github.com/${PN/-//}-tutorials/archive/v${PV}.tar.gz -> ${PN}-tutorials-${PV}.tar.gz )"
+ KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-macos"
+ S="${WORKDIR}/${P#votca-}"
+else
+ inherit git-r3
+ EGIT_REPO_URI="https://github.com/${PN/-//}.git"
+ KEYWORDS=""
+ PDEPEND="${PDEPEND} doc? ( ~app-doc/${PN}-manual-${PV} )"
+fi
+
+DESCRIPTION="Votca coarse-graining engine"
+HOMEPAGE="http://www.votca.org"
+
+LICENSE="Apache-2.0"
+SLOT="0"
+
+RDEPEND="
+ ~sci-libs/votca-tools-${PV}
+ >=dev-cpp/eigen-3.3
+ gromacs? ( sci-chemistry/gromacs:= )
+ hdf5? ( sci-libs/hdf5 )
+ dev-lang/perl
+ app-shells/bash:*"
+
+DEPEND="${RDEPEND}
+ doc? (
+ app-doc/doxygen[dot]
+ dev-texlive/texlive-latexextra
+ virtual/latex-base
+ dev-tex/pgf
+ )
+ >=app-text/txt2tags-2.5
+ virtual/pkgconfig"
+
+DOCS=( README.md NOTICE CHANGELOG.md )
+
+src_unpack() {
+ if [[ ${PV} != *9999 ]]; then
+ default
+ else
+ git-r3_src_unpack
+ if use examples; then
+ EGIT_REPO_URI="https://github.com/${PN/-//}-tutorials.git"
+ EGIT_BRANCH="master"
+ EGIT_CHECKOUT_DIR="${WORKDIR}/${PN#votca-}-tutorials"\
+ git-r3_src_unpack
+ fi
+ fi
+}
+
+src_configure() {
+ mycmakeargs=(
+ -DWITH_GMX=$(usex gromacs)
+ -DCMAKE_DISABLE_FIND_PACKAGE_HDF5=$(usex '!hdf5')
+ -DWITH_RC_FILES=OFF
+ )
+ cmake-utils_src_configure
+}
+
+src_install() {
+ cmake-utils_src_install
+ newbashcomp scripts/csg-completion.bash csg_call
+ for i in "${ED}"/usr/bin/csg_*; do
+ [[ ${i} = *csg_call ]] && continue
+ bashcomp_alias csg_call "${i##*/}"
+ done
+ if use doc; then
+ [[ ${PV} != *9999* ]] && dodoc "${DISTDIR}/${PN}-manual-${PV}.pdf"
+ cmake-utils_src_make -C "${CMAKE_BUILD_DIR}" html
+ dodoc -r "${CMAKE_BUILD_DIR}"/share/doc/html
+ fi
+ if use examples; then
+ insinto "/usr/share/doc/${PF}/tutorials"
+ docompress -x "/usr/share/doc/${PF}/tutorials"
+ rm -rf "${WORKDIR}/${PN#votca-}"-tutorials*/CMake*
+ doins -r "${WORKDIR}/${PN#votca-}"-tutorials*/*
+ fi
+}
+
+pkg_postinst() {
+ einfo
+ einfo "Please read and cite:"
+ einfo "VOTCA, J. Chem. Theory Comput. 5, 3211 (2009). "
+ einfo "https://dx.doi.org/10.1021/ct900369w"
+ einfo
+}
diff --git a/sci-chemistry/votca-csg/votca-csg-9999.ebuild b/sci-chemistry/votca-csg/votca-csg-9999.ebuild
index b894aae404b1..7aad54413e78 100644
--- a/sci-chemistry/votca-csg/votca-csg-9999.ebuild
+++ b/sci-chemistry/votca-csg/votca-csg-9999.ebuild
@@ -1,4 +1,4 @@
-# Copyright 1999-2018 Gentoo Foundation
+# Copyright 1999-2019 Gentoo Authors
# Distributed under the terms of the GNU General Public License v2
EAPI=6
@@ -65,9 +65,8 @@ src_unpack() {
src_configure() {
mycmakeargs=(
-DWITH_GMX=$(usex gromacs)
- -DWITH_H5MD=$(usex hdf5)
+ -DCMAKE_DISABLE_FIND_PACKAGE_HDF5=$(usex '!hdf5')
-DWITH_RC_FILES=OFF
- -DLIB=$(get_libdir)
)
cmake-utils_src_configure
}
diff --git a/sci-chemistry/votca-csgapps/Manifest b/sci-chemistry/votca-csgapps/Manifest
index 8064a9a045ab..9acf38ceabfb 100644
--- a/sci-chemistry/votca-csgapps/Manifest
+++ b/sci-chemistry/votca-csgapps/Manifest
@@ -1,6 +1,8 @@
DIST votca-csgapps-1.4.1.tar.gz 21066 BLAKE2B 8e1d25957b7c62d2182872de4d0c50c90fefdf699ec5e9e785916791e9cc06db2dbcbbdbaf7afe6921e34179e12dfa2326eb9464261801e48177ec69126ae2bb SHA512 80881ac173b56b07825c484f98c598de8d74bb8a54b888f06cc3a20d15670b49059e50adc210308e21ee4ea9038cf564c08d7ab33c4a43864acb1de97bc3fcef
DIST votca-csgapps-1.4.tar.gz 21072 BLAKE2B 30c2f6692544741bfbec09efea2f68ae48cd4716e61e40d3da12a17ad941f2947cc6a8477229b80e420e217a95adff4152a07215e2e913e71736b61ba1ac226a SHA512 325c99606f17d7bb00e2cc3b1545f31dd4cf1fbc0d216f2da2c48e06b2011c9f99096643a6c6efd794a169de056f803f791c156afec4a73e41c58bc4ca1055f9
+DIST votca-csgapps-1.5.tar.gz 25975 BLAKE2B 185e759d658c6f763da2d26770766ec8ee05017b4c6a67e13915de04fbf2ecf268f2f800c5e18ef0f38c615340b0db163e886dc98a9395a69359f94dc8773f60 SHA512 20dda9d07ef2f33c9decff2766ece8f24cf2562993b4dfb7dd637d84325b835a6ecd30d34c5cfb9c428dbf72c2b5dfe9fd49d266182704b981db151c3c4ea2e4
EBUILD votca-csgapps-1.4.1.ebuild 653 BLAKE2B 208ae3538fcf42296a4a1077d222a9d6f752648834dc8f74941546fa2bdffb6fd9ea60ad31d124b8de52c3f59c089f48d4395b5166989fec19191076570e1bf0 SHA512 13ab1d118aea4f16664566f4e13965cc46a9e67e37157e23ad8c76a68d5db89b8db5b95104c23cf9cc16f78315dc9f632708cbd3920a545d964e2226dc6f9ff2
EBUILD votca-csgapps-1.4.ebuild 649 BLAKE2B 4b219583f5d5a1f7f4ed7635b4fedce2619d6a0b13bcab7bde2f88cf177a9478fefcb71974deacc09eded4f278ae27c95bd2aa387c79ad4ae2268c2ff0f40a94 SHA512 b6400f2a28ce0c2953495c00aeaab0bfd15c52df28a5e6575b0f568c9a777678495b591cbce58fa61e1d54149fa3f684c6f9f99aaa82127e2eedcc67f6259ed8
+EBUILD votca-csgapps-1.5.ebuild 662 BLAKE2B 7c9d1933995b5b8edc90c7e4ff178f530a330bb97640238f4a58e09443dcbc160592aa2b1d9dabe7fde2a63f43d2c6d00fe61d570ecd17cc2115fcc1e019e4e5 SHA512 6dc29fcf817922c2f43897aca83042222f9792a12938dc3bc1be8cffc15e81ff96f5ac339e0378f77ae63afbfd256a81d05d378063a4c1ac852c17e219c7ff31
EBUILD votca-csgapps-9999.ebuild 665 BLAKE2B 23030fd2ba47629a9285fc8c9b436bb45614ba3ca8198592aea4189e5d2ae005d88b96a745e6de4db8f913e37e73e07f33a15ec0ef5dda9932a99159286711d4 SHA512 a72ac9569a69e4d94180fd45daf1d06496ea8e253f97a4ec877eb66db62bb7b600ab122909994504b5f677d3424a79e9e663dfa8f5c8d5a5b1388bee325aa524
MISC metadata.xml 457 BLAKE2B 9d392be6c061ebd3d975308065fcdec4ee061268f4b8b79e122b183d2e4f7259fdb9e165b8b3f030f1edbbc4f112757b1de7a50929ac112d5633143f9585699a SHA512 42a8ccad09d35dd4677b70005606582207747ae39d62a7ea75e2f5de28f887fee4265c8ae3b38e5cdb3017cc84c8902e2a525ae31fa5dd0aa00369e9b428f563
diff --git a/sci-chemistry/votca-csgapps/votca-csgapps-1.5.ebuild b/sci-chemistry/votca-csgapps/votca-csgapps-1.5.ebuild
new file mode 100644
index 000000000000..7cbd8d88dc7a
--- /dev/null
+++ b/sci-chemistry/votca-csgapps/votca-csgapps-1.5.ebuild
@@ -0,0 +1,33 @@
+# Copyright 1999-2019 Gentoo Authors
+# Distributed under the terms of the GNU General Public License v2
+
+EAPI=6
+
+CMAKE_MAKEFILE_GENERATOR="ninja"
+
+inherit cmake-utils
+
+if [ "${PV}" != "9999" ]; then
+ SRC_URI="https://github.com/${PN/-//}/archive/v${PV}.tar.gz -> ${P}.tar.gz"
+ KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-macos"
+ S="${WORKDIR}/${P#votca-}"
+else
+ inherit git-r3
+ EGIT_REPO_URI="https://github.com/${PN/-//}.git"
+ KEYWORDS=""
+fi
+
+DESCRIPTION="Extra applications for votca-csg"
+HOMEPAGE="http://www.votca.org"
+
+LICENSE="Apache-2.0"
+SLOT="0"
+IUSE=""
+
+RDEPEND="
+ >=dev-cpp/eigen-3.3
+ ~sci-chemistry/${PN%apps}-${PV}"
+
+DEPEND="${RDEPEND}"
+
+DOCS=( README )
diff --git a/sci-chemistry/votca-ctp/Manifest b/sci-chemistry/votca-ctp/Manifest
index e52b12a3350e..dae27c257d5e 100644
--- a/sci-chemistry/votca-ctp/Manifest
+++ b/sci-chemistry/votca-ctp/Manifest
@@ -1,2 +1,5 @@
-EBUILD votca-ctp-9999.ebuild 935 BLAKE2B 618d4f698c6d22298496b5a113a64cf87cba9db3ad1a89fac0c4f898973e48f7cca7bf6ea80ae05016498384698be4e55866adb36b949b187a5761acb8b62107 SHA512 159e8b6616e08e5139ab386d91c0deec99420eb42f754d43794f67dd5ff6274ead478533fa3f66204d0e89ebcabf2a6ced73cedccba8c6e2b86459dceb330165
+DIST votca-ctp-1.5.tar.gz 1345419 BLAKE2B 148846b9118cabfa541eb4fe0129e366d0c447e2daf969833beb5df91ca7b43f0262c5845303ccf05ed8d3f9e2c2a5e0f876ec97c2601419ed04a28d56640494 SHA512 bc4dbddcefb473015a6513f44f4fddd5995a8598f82505e81b3c50ae771e64e8c979f39a347ab2deb55054e7efffad28b5ff3f73d2c1b8905bcaf6f007ff2959
+DIST votca-ctp-manual-1.5.pdf 970539 BLAKE2B 8646215a4c2cd7be6d4c03820f00b8067e15c27f51fb6678540026cff1af0e28dffa528423ad47a4047a8f84fc1078d503a56a4a235e004735f0276ec1a6a33e SHA512 a315c1b4b37461f4f0d30ead1fec2ca33ff23d81c9d5e4d888ef7d7dd722f68f9596826f828f8a76841d6dde6889f623b73d9fe0f8a6c5a7cec1c16a83cf9030
+EBUILD votca-ctp-1.5.ebuild 1537 BLAKE2B 352a11fec91618444983028294c92cdb878396135f00ddecf0d316772f39d1c33e7be370b12efc59ae720b834eb47b8463eefdbb06c60f18d5ec732bcf789938 SHA512 c6685c4aa7e2fd14e15233cdd3671a4c39230901ef061d2af291bf74c39208457c17724588befd115cb491771409514597d06e5ec48915a3fcb3a840a185df84
+EBUILD votca-ctp-9999.ebuild 1537 BLAKE2B 352a11fec91618444983028294c92cdb878396135f00ddecf0d316772f39d1c33e7be370b12efc59ae720b834eb47b8463eefdbb06c60f18d5ec732bcf789938 SHA512 c6685c4aa7e2fd14e15233cdd3671a4c39230901ef061d2af291bf74c39208457c17724588befd115cb491771409514597d06e5ec48915a3fcb3a840a185df84
MISC metadata.xml 453 BLAKE2B a61c365529a1c877e5bad44f6e2f0a24a8797956e9e3a5b3d4649c58c27df9301b50c84bb5767ca52a151e2b509f46a92cd3f17c1020fb7bedf7fb2fe708b48d SHA512 53ace87a281559ae8881b8b010c76801696521de930dcfaf12a5e320456cb4a21a55a7873d173bdb5cc740f3cdbccf1daf62bc83579342f4f23329df7dbd2dba
diff --git a/sci-chemistry/votca-ctp/votca-ctp-1.5.ebuild b/sci-chemistry/votca-ctp/votca-ctp-1.5.ebuild
new file mode 100644
index 000000000000..892997f7af3e
--- /dev/null
+++ b/sci-chemistry/votca-ctp/votca-ctp-1.5.ebuild
@@ -0,0 +1,71 @@
+# Copyright 1999-2019 Gentoo Authors
+# Distributed under the terms of the GNU General Public License v2
+
+EAPI=6
+
+CMAKE_MAKEFILE_GENERATOR="ninja"
+
+inherit cmake-utils multilib
+
+IUSE="doc"
+if [ "${PV}" != "9999" ]; then
+ SRC_URI="https://github.com/${PN/-//}/archive/v${PV}.tar.gz -> ${P}.tar.gz
+ doc? ( https://github.com/${PN/-//}/releases/download/v${PV}/${PN}-manual-${PV}.pdf )"
+ KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-macos"
+ S="${WORKDIR}/${P#votca-}"
+else
+ inherit git-r3
+ EGIT_REPO_URI="https://github.com/${PN/-//}.git"
+ KEYWORDS=""
+fi
+
+DESCRIPTION="Votca charge transport module"
+HOMEPAGE="http://www.votca.org"
+
+LICENSE="Apache-2.0"
+SLOT="0"
+
+RDEPEND="
+ ~sci-libs/votca-tools-${PV}[sqlite]
+ >=dev-cpp/eigen-3.3
+ sci-libs/gsl
+ ~sci-chemistry/votca-csg-${PV}"
+
+DEPEND="${RDEPEND}
+ virtual/pkgconfig"
+
+if [ "${PV}" != "9999" ]; then
+ DEPEND="${DEPEND}
+ doc? (
+ app-doc/doxygen[dot]
+ dev-texlive/texlive-latexextra
+ virtual/latex-base
+ dev-tex/pgf
+ )"
+fi
+
+DOCS=( README.md NOTICE CHANGELOG.md )
+
+src_configure() {
+ [[ ${PV} = *9999* ]] && mycmakeargs=(
+ -DBUILD_XTP_MANUAL=$(usex doc)
+ )
+ cmake-utils_src_configure
+}
+
+src_install() {
+ cmake-utils_src_install
+ if use doc; then
+ [[ ${PV} != *9999* ]] && dodoc "${DISTDIR}/${PN}-manual-${PV}.pdf"
+ cmake-utils_src_make -C "${CMAKE_BUILD_DIR}" html
+ dodoc -r "${CMAKE_BUILD_DIR}"/share/doc/html
+ fi
+}
+
+pkg_postinst() {
+ einfo
+ einfo "Please read and cite:"
+ einfo "VOTCA-CTP, J. Chem. Theo. Comp. 7, 3335-3345 (2011)"
+ einfo "https://dx.doi.org/10.1021/ct200388s"
+ einfo
+}
diff --git a/sci-chemistry/votca-ctp/votca-ctp-9999.ebuild b/sci-chemistry/votca-ctp/votca-ctp-9999.ebuild
index 4e400a2318b7..892997f7af3e 100644
--- a/sci-chemistry/votca-ctp/votca-ctp-9999.ebuild
+++ b/sci-chemistry/votca-ctp/votca-ctp-9999.ebuild
@@ -1,4 +1,4 @@
-# Copyright 1999-2018 Gentoo Foundation
+# Copyright 1999-2019 Gentoo Authors
# Distributed under the terms of the GNU General Public License v2
EAPI=6
@@ -7,9 +7,10 @@ CMAKE_MAKEFILE_GENERATOR="ninja"
inherit cmake-utils multilib
-IUSE=""
+IUSE="doc"
if [ "${PV}" != "9999" ]; then
- SRC_URI="https://github.com/${PN/-//}/archive/v${PV}.tar.gz -> ${P}.tar.gz"
+ SRC_URI="https://github.com/${PN/-//}/archive/v${PV}.tar.gz -> ${P}.tar.gz
+ doc? ( https://github.com/${PN/-//}/releases/download/v${PV}/${PN}-manual-${PV}.pdf )"
KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-macos"
S="${WORKDIR}/${P#votca-}"
else
@@ -33,8 +34,34 @@ RDEPEND="
DEPEND="${RDEPEND}
virtual/pkgconfig"
+if [ "${PV}" != "9999" ]; then
+ DEPEND="${DEPEND}
+ doc? (
+ app-doc/doxygen[dot]
+ dev-texlive/texlive-latexextra
+ virtual/latex-base
+ dev-tex/pgf
+ )"
+fi
+
DOCS=( README.md NOTICE CHANGELOG.md )
+src_configure() {
+ [[ ${PV} = *9999* ]] && mycmakeargs=(
+ -DBUILD_XTP_MANUAL=$(usex doc)
+ )
+ cmake-utils_src_configure
+}
+
+src_install() {
+ cmake-utils_src_install
+ if use doc; then
+ [[ ${PV} != *9999* ]] && dodoc "${DISTDIR}/${PN}-manual-${PV}.pdf"
+ cmake-utils_src_make -C "${CMAKE_BUILD_DIR}" html
+ dodoc -r "${CMAKE_BUILD_DIR}"/share/doc/html
+ fi
+}
+
pkg_postinst() {
einfo
einfo "Please read and cite:"
diff --git a/sci-chemistry/votca-xtp/Manifest b/sci-chemistry/votca-xtp/Manifest
index 077f76c40cab..f6dea503a50a 100644
--- a/sci-chemistry/votca-xtp/Manifest
+++ b/sci-chemistry/votca-xtp/Manifest
@@ -1,8 +1,11 @@
DIST votca-xtp-1.4.1.tar.gz 15214413 BLAKE2B 0f6e67179e2ee1fa8ab79ca0c2d810f9867dab474b50d49316aaed33a01b5cf93a129558792fff2851b8f1b7794ab423c25e4b6f6bce6809520ff40234b14e93 SHA512 1a3f5df3dc9a7f532464ef84ff4f4f8e60b9495529f349ab5e496595e73fff8f4678b8276b2c5733dd3f692ca03220e7d0bc4a82163017572428c0d1dd5f91fd
DIST votca-xtp-1.4.tar.gz 15214266 BLAKE2B 435ba1603495d904ccce20b4fa665d3a1c62fc04005ea89cf83b431240fb78f8a44f09ad619af331802e43ca3d05b20a4c6bbbb0c75360940d4f786c0030fd7a SHA512 ffc32260331862393e199f7ab643b1008ee4f800cd017f175550a079afaa20e5c929cb8599bc0c2a2328253051895de7b979f5fec044243abc680a0dc87a69b9
+DIST votca-xtp-1.5.tar.gz 14637712 BLAKE2B af04de706f0d100968928459a03b6a94a94a211b3f5bd056d123756d40760fb0ada70add429ed5b86e211dbdd3b91aa4cf12e51a260638766d04158e7b5a1201 SHA512 693f34004749edfbabcd0a19dc23b3de3c09858c7c0dfe1e420b92632397971e3687489c1074a489d4d2fd337ddc5749c419869db104c65736e7c01bf12cd140
DIST votca-xtp-manual-1.4.1.pdf 1066873 BLAKE2B 8cbd4b55b013794a19a8b5867b929b8e2d9084e6780d777b2a2bbaea23006f4f4ec5b26bd4a07c59e1c6726f23471eb1756b668636e0c4e656a0807e64197586 SHA512 fdf1147f24785524f5e96020fcd29c32bbeef520eebf6afba32b59d7e777d586c452919478d2734c3f021e558b1147b945cdbc0833402be2b16e5af3a8e37f5f
DIST votca-xtp-manual-1.4.pdf 1064006 BLAKE2B e4f0c20c6d40a5f58b863258cc122e5a7cf376b7138927c0a6bdd400841c330fc013287513258f6f68609e39f0bf39b965fd099171594c5e2730fba82a2488d4 SHA512 96d7f59dbcc3a6efdc297237025217d5a56d2c81e491d90680786ea4769a5ebbea379df3b06c4847307ee30accd7415e316dee4730361262f5aff73d2f5d387e
+DIST votca-xtp-manual-1.5.pdf 923211 BLAKE2B 5d2c78260365c6339753e1663d707d642dea870183386f799e8fb34517fdb69680293b77356ae00c3ee6b66053c614b7174503e2e752790a56e7dd2976b3cb0a SHA512 86079339de1cb6e3d0487ad816e86deebe6a1bddcac1f06801e3f94eca2e19b30ec61b286f13429e257aa152129f5dbb4bbbc88ac9d58bf1a9aeb1c3f430d3e0
EBUILD votca-xtp-1.4.1.ebuild 1622 BLAKE2B 1358e16a21b653584fefdf8eb673744f18ba75ef59ae5410c609857ca0b6d73676b5f7ca101dd24d2d58ca1547ca062941c71296ca57e45cdfed29052dfc7cb2 SHA512 bee48dc7a8c0caba3a9a7ed546ad690fb9fc22310f512bc613aa76b35f72b39f4a2b620ab2789237465ce07a0be7b8fbb444eccd45e795b0c1cc3667b046f978
EBUILD votca-xtp-1.4.ebuild 1618 BLAKE2B bab1c2d4cd442bc2208f87ff16ed1218aaf6c34ccb229c63d9de14086055684ee9440102b0c9a5bf807ddad69d22ee1b680120f493f18891e8719211509a418f SHA512 affe412a6c4cb8139530d559ae4c12d519eb6b9190075743ed7806c2975a4647f48282893d71b4bef3477b0d35ee07815e416c33095be819967d235c9623a48a
-EBUILD votca-xtp-9999.ebuild 1578 BLAKE2B 4bb4b3043c4005e87fa940c32beed2a11c6ede911d780136c78bda1606e107974bf06f4b62396f610d2a9c26a176739fa895ab3847c085f3158db99ecc4cdbfa SHA512 28d38840cec12742a274183926e1b05fba54bab9148fa1b3bb4ea435611e3aad7bb6d43ef68df6ec57c1234a1de2927fb327978ba8a130e6152368254d34119b
+EBUILD votca-xtp-1.5.ebuild 1622 BLAKE2B 0c99db3dbba224f0485838e5fddb8b857fd13d5e5d798bbaa4b64f89ffcbb1bbbb55a626ff601efd583bf32270c4a8be21a4f8357e6a67e1d8f3feac7c2eccdc SHA512 31a8520c2438ecd0407748b65d363c5ebf2027b71b19fd90810f75b25cf5ea90ed7eedde354fb17dbd0f087963b0b23923f29a9d028d899668fd90eda0806231
+EBUILD votca-xtp-9999.ebuild 1622 BLAKE2B 0c99db3dbba224f0485838e5fddb8b857fd13d5e5d798bbaa4b64f89ffcbb1bbbb55a626ff601efd583bf32270c4a8be21a4f8357e6a67e1d8f3feac7c2eccdc SHA512 31a8520c2438ecd0407748b65d363c5ebf2027b71b19fd90810f75b25cf5ea90ed7eedde354fb17dbd0f087963b0b23923f29a9d028d899668fd90eda0806231
MISC metadata.xml 453 BLAKE2B 51ee11d9c55f15fd0382a7c422d1c12364901a5ac257f57d04b91b8ca77acf9c1eb709879bfc6042b577961352cbc4e31b01ece3a8c650eaffa9b4ebc6d385fb SHA512 892c8f84df6bd19e969b372def9a485be9121d8f7ab410b532529980298e57d0705f73fac409d8f251449cf2119dd3f28133e08d21d0e73b27d5ec0e9a3f205e
diff --git a/sci-chemistry/votca-xtp/votca-xtp-1.5.ebuild b/sci-chemistry/votca-xtp/votca-xtp-1.5.ebuild
new file mode 100644
index 000000000000..15a8759ad217
--- /dev/null
+++ b/sci-chemistry/votca-xtp/votca-xtp-1.5.ebuild
@@ -0,0 +1,73 @@
+# Copyright 1999-2019 Gentoo Authors
+# Distributed under the terms of the GNU General Public License v2
+
+EAPI=6
+
+CMAKE_MAKEFILE_GENERATOR="ninja"
+
+inherit bash-completion-r1 cmake-utils multilib
+
+IUSE="doc"
+if [ "${PV}" != "9999" ]; then
+ SRC_URI="https://github.com/${PN/-//}/archive/v${PV}.tar.gz -> ${P}.tar.gz
+ doc? ( https://github.com/${PN/-//}/releases/download/v${PV}/${PN}-manual-${PV}.pdf )"
+ KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-macos"
+ S="${WORKDIR}/${P#votca-}"
+else
+ inherit git-r3
+ EGIT_REPO_URI="https://github.com/${PN/-//}.git"
+ KEYWORDS=""
+fi
+
+DESCRIPTION="Votca excitation and charge properties module"
+HOMEPAGE="http://www.votca.org"
+
+LICENSE="Apache-2.0"
+SLOT="0"
+
+RDEPEND="
+ ~sci-libs/votca-tools-${PV}[sqlite]
+ >=dev-cpp/eigen-3.3
+ ~sci-chemistry/votca-csg-${PV}
+ sci-libs/ceres-solver
+ sci-libs/libxc"
+
+DEPEND="${RDEPEND}
+ >=app-text/txt2tags-2.5
+ virtual/pkgconfig"
+
+if [ "${PV}" != "9999" ]; then
+ DEPEND="${DEPEND}
+ doc? (
+ app-doc/doxygen[dot]
+ dev-texlive/texlive-latexextra
+ virtual/latex-base
+ dev-tex/pgf
+ )"
+fi
+
+DOCS=( README.md NOTICE CHANGELOG.md )
+
+src_configure() {
+ [[ ${PV} = *9999* ]] && mycmakeargs=(
+ -DBUILD_XTP_MANUAL=$(usex doc)
+ )
+ cmake-utils_src_configure
+}
+
+src_install() {
+ cmake-utils_src_install
+ if use doc; then
+ [[ ${PV} != *9999* ]] && dodoc "${DISTDIR}/${PN}-manual-${PV}.pdf"
+ cmake-utils_src_make -C "${CMAKE_BUILD_DIR}" html
+ dodoc -r "${CMAKE_BUILD_DIR}"/share/doc/html
+ fi
+}
+
+pkg_postinst() {
+ einfo
+ einfo "Please read and cite:"
+ einfo "VOTCA-XTP, J. Chem. Theo. Comp. 14, 6353 (2018)"
+ einfo "https://doi.org/10.1021/acs.jctc.8b00617"
+ einfo
+}
diff --git a/sci-chemistry/votca-xtp/votca-xtp-9999.ebuild b/sci-chemistry/votca-xtp/votca-xtp-9999.ebuild
index 40eff61cae68..15a8759ad217 100644
--- a/sci-chemistry/votca-xtp/votca-xtp-9999.ebuild
+++ b/sci-chemistry/votca-xtp/votca-xtp-9999.ebuild
@@ -1,4 +1,4 @@
-# Copyright 1999-2018 Gentoo Foundation
+# Copyright 1999-2019 Gentoo Authors
# Distributed under the terms of the GNU General Public License v2
EAPI=6
@@ -29,24 +29,27 @@ RDEPEND="
~sci-libs/votca-tools-${PV}[sqlite]
>=dev-cpp/eigen-3.3
~sci-chemistry/votca-csg-${PV}
- ~sci-chemistry/votca-ctp-${PV}
sci-libs/ceres-solver
sci-libs/libxc"
DEPEND="${RDEPEND}
+ >=app-text/txt2tags-2.5
+ virtual/pkgconfig"
+
+if [ "${PV}" != "9999" ]; then
+ DEPEND="${DEPEND}
doc? (
app-doc/doxygen[dot]
dev-texlive/texlive-latexextra
virtual/latex-base
dev-tex/pgf
- )
- >=app-text/txt2tags-2.5
- virtual/pkgconfig"
+ )"
+fi
DOCS=( README.md NOTICE CHANGELOG.md )
src_configure() {
- mycmakeargs=(
+ [[ ${PV} = *9999* ]] && mycmakeargs=(
-DBUILD_XTP_MANUAL=$(usex doc)
)
cmake-utils_src_configure
@@ -64,7 +67,7 @@ src_install() {
pkg_postinst() {
einfo
einfo "Please read and cite:"
- einfo "VOTCA-CTP, J. Chem. Theo. Comp. 7, 3335-3345 (2011)"
- einfo "https://dx.doi.org/10.1021/ct200388s"
+ einfo "VOTCA-XTP, J. Chem. Theo. Comp. 14, 6353 (2018)"
+ einfo "https://doi.org/10.1021/acs.jctc.8b00617"
einfo
}