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authorV3n3RiX <venerix@koprulu.sector>2024-09-05 12:28:41 +0100
committerV3n3RiX <venerix@koprulu.sector>2024-09-05 12:28:41 +0100
commit5d93bae2c1576ab817f482024a6d47592829407b (patch)
tree1fd9619473e6cdba4c004554cb1743ec16654102 /sci-chemistry
parent518b45bffd19d0b75715f338985f96c459f9d129 (diff)
gentoo auto-resync : 05:09:2024 - 12:28:40
Diffstat (limited to 'sci-chemistry')
-rw-r--r--sci-chemistry/Manifest.gzbin8529 -> 8526 bytes
-rw-r--r--sci-chemistry/pymol/Manifest2
-rw-r--r--sci-chemistry/pymol/pymol-3.0.0.ebuild18
3 files changed, 13 insertions, 7 deletions
diff --git a/sci-chemistry/Manifest.gz b/sci-chemistry/Manifest.gz
index 24619a314124..2f9fcc4a4824 100644
--- a/sci-chemistry/Manifest.gz
+++ b/sci-chemistry/Manifest.gz
Binary files differ
diff --git a/sci-chemistry/pymol/Manifest b/sci-chemistry/pymol/Manifest
index dbc27f448a0d..c2aeb2fb9df4 100644
--- a/sci-chemistry/pymol/Manifest
+++ b/sci-chemistry/pymol/Manifest
@@ -1,5 +1,5 @@
AUX pymol-2.5.0-format-security.patch 562 BLAKE2B 566f653ca3abd4498f9ee5d7255e1b06d8df320bd25a569620b1ee33da0cfb6a969fd3e0a65fbce7116cd6567d9a544c57f4d6d399bec00b9effa8273a52153c SHA512 4e93a0449470abdbd2d943ef0a5fac7f302485ca42c6d9ccdf1ab9a879029d5185c3f1a3a2e237fd8b3b3bf0a306bce07db3226257360127c97546480c233c4f
DIST pymol-1.8.4.0.png.xz 19528 BLAKE2B f3d23d4cedca3d8bb96b20646a548da4be570697e3346a11b01c5c3599b536ba4697be08472dfa8a4f6533167defc1a37a1de332931a73857319cb28fd42cd2b SHA512 40bb0d3f226476f6e047b5361956aad955232a97641474765eaa5204f0539aee3810e0266213618a45364f9f31f6eb18380b17e0c79f64065f7b62a9016caa7c
DIST pymol-3.0.0.tar.gz 29510174 BLAKE2B b67818e408045e386e44a203f29cd94a0ce34ec706776d29f78f1720bdc5c79d88f3b3e178882295b5a636d97fe70ff49eb1b021a9a6b96f0f4216bc392219d1 SHA512 eab05a46220339a05d8d4facdce6bfa08c6fc8a858a7b228236ef6c4054207059ef0f53a26bedebe4084a74b510015937fb4477f99612b21412cd75bf0c376a2
-EBUILD pymol-3.0.0.ebuild 2831 BLAKE2B b277127a25bc4b292238b374bd6945e372bbdfc6a7855a3e03c7855dd49fb2c75f3b064fbeb783f6dfc838f3069aeb65139a23caecc858c6557eed34a40cd79e SHA512 890933535af6f7bb0f49b554e6f9ab5fc2134a04c163ef28c61e2fb351faa5fd3c5aa166dd8bc444d649dd5688f1c5a2579acfdaeca41b8ca3f1247f24027351
+EBUILD pymol-3.0.0.ebuild 2958 BLAKE2B 2eac68b0cf15c3369e243b7456e00b1c1119f0d8399bea7321794981f41911bd56bc10713c9102475a054e6a52353cef63c0f9416974bb1db5d91ddd9f6d2dfa SHA512 ca7a597cd909d5a04e77c0afb7e2c07413b13dd42d5788db97defabee23370695299e17193b431eb6190c87a0e06d8e741d2067de973652d1749b244cfeb0254
MISC metadata.xml 495 BLAKE2B 32d321e92c7e7c226747660c314f5cff9aabf9ee41c8a864064432ac9554879db7bf60640993dadae6e00a9b7d1367cb8ab228b63b8797ca84e5618eeeb192cc SHA512 36ef956d111c76182c70c81a830885f540fb2710f696b2711837d4bf1055a8792226f38b827f389a3a3861f259bae1394d6da50c2b33a0ddb4e6940262e1b25d
diff --git a/sci-chemistry/pymol/pymol-3.0.0.ebuild b/sci-chemistry/pymol/pymol-3.0.0.ebuild
index 150f7732d930..b6ec9fbef1e3 100644
--- a/sci-chemistry/pymol/pymol-3.0.0.ebuild
+++ b/sci-chemistry/pymol/pymol-3.0.0.ebuild
@@ -26,19 +26,20 @@ IUSE="+netcdf web"
DEPEND="
dev-cpp/msgpack-cxx
dev-libs/mmtf-cpp
- dev-python/pyopengl[${PYTHON_USEDEP}]
- dev-python/PyQt5[opengl,${PYTHON_USEDEP}]
dev-python/numpy[${PYTHON_USEDEP}]
- dev-python/pmw[${PYTHON_USEDEP}]
+ sys-libs/zlib
media-libs/freetype:2
media-libs/glew:0=
media-libs/glm
media-libs/libpng:0=
- media-video/mpeg-tools
- sys-libs/zlib
netcdf? ( sci-libs/netcdf:0= )
"
-RDEPEND="${DEPEND}
+RDEPEND="
+ ${DEPEND}
+ media-video/mpeg-tools
+ dev-python/pyopengl[${PYTHON_USEDEP}]
+ dev-python/PyQt5[opengl,${PYTHON_USEDEP}]
+ dev-python/pmw[${PYTHON_USEDEP}]
sci-chemistry/chemical-mime-data
"
@@ -66,6 +67,11 @@ python_prepare_all() {
}
python_configure_all() {
+ # -Werror=odr
+ # https://bugs.gentoo.org/933235
+ # https://github.com/schrodinger/pymol-open-source/issues/395
+ filter-lto
+
use !netcdf && DISTUTILS_ARGS=( --no-vmd-plugins )
}