gentoo auto-resync : 13:07:2024 - 12:26:41

4 files changed, 25 insertions, 2 deletions

diff --git a/sci-chemistry/Manifest.gz b/sci-chemistry/Manifest.gz
index c06f1b99ca2e..dbbd5c59e90e 100644
--- a/sci-chemistry/Manifest.gz
+++ b/sci-chemistry/Manifest.gz
diff --git a/sci-chemistry/autodock_vina/Manifest b/sci-chemistry/autodock_vina/Manifest
index 8cd80f22576c..6f84dbd72847 100644
--- a/sci-chemistry/autodock_vina/Manifest
+++ b/sci-chemistry/autodock_vina/Manifest
@@ -1,9 +1,10 @@
 AUX 1.1.2-gentoo.patch 2448 BLAKE2B f63add1d0fec8716672672af78fe8f34053bf060044e78fcf30ca6054e4075a5f12ac3a903812c9cd619dc34fa854603c8369c8acfcf17130d1b24b50b3d5373 SHA512 d8165d88f3e91064c74f1506a7f58473a74f6ebf993165827694d78170b29227dc378c61a7f096a3c49708b713583aca3d5714827d1fe43a5bb37f3d648d2613
 AUX autodock_vina-1.1.2-boost-filesystem.patch 2936 BLAKE2B 70c55e95e9728221ba80177989fde0cc6c93b479779aa0dda45dcad79b97018fe934ea56b4ede4af20ce867b6ed39c3958a5529b8f286aec33ec7ea53d339ada SHA512 4226fb0d7196362a02afa4e0b0616146ef816a439dd63e1bffbfef183975fe7e6260318f919e9d9835d2d47973542b5340e93ad35b070467e42c0990f9a635f7
 AUX autodock_vina-1.1.2-missing-debug-decl.patch 365 BLAKE2B 959b46facdce27850a1f9fd6c66ecc297e4ad089e79896b9fe2127e425bd1bfcfce5d676cf2e4336c47d3a72b0e8319c791fdf1a5807f244cf5b4528de8cbb25 SHA512 ddbdca76fca16b46fd042b57eb941b7ba67f59f46c35dc18428ea6873c8ed5f03051247b8c667a08af8de40fccb0caf851848bb9082536225cacf8eb3e313c98
+AUX autodock_vina-1.2.5-boost-1.85.patch 733 BLAKE2B 4163ff875f28ba883a0a0b98f23ba8341f1eb7fd29831e3654c7bb739605dfb1edf2c40867289fb7eaf3c59cd9220d856d914f55dbaa211acdf016789c8e10e8 SHA512 2bcabc02d3456b461a118e1d14932c8c2a091e8176cd927c1b423bf24aefecfb82e0a446f66d97830bebdee7b56fc7c1bc4d45512ddfd81bb827b43b897a1696
 AUX autodock_vina-1.2.5-gentoo.patch 2803 BLAKE2B a365f3c83e5cfa366e458ce87e0d1e0a305b137040fbf3e0c0b2549e3cfde617c6934aaa4da6a992440400fbaa3f73b42faa665b1a5d1464f2a8d103b5469af3 SHA512 46b5c10123cf721eb80c6fa8d87f2d8405d269915d6bfec3eff5f1d5ee870e301608748ae245f7997f5c8a4b7c27e50fa222eff192c84ec4c82946c1783fa44b
 DIST autodock_vina-1.2.5.tar.gz 24158966 BLAKE2B c11493fcb35d409b97f639c4da48967d5df450781d412d80a951b95162555f4b1dfba809a01062136a7f0664c0b9a01a42b5403ee1d278a57afd669cf1f96321 SHA512 d36908e5833d22bcbc4dae353ef32b905d6eb46511302f7583a291398bfadff5e75fc99ce7b380860578b2257e5c32434cc75b1ca51fafb4b5f12d9477a878e9
 DIST autodock_vina_1_1_2.tgz 67366 BLAKE2B dc754bf522795ebfbfcf89a2df4e3761d941c1f0ce05cf56898720c1e855f5dd00fd2a583f5a8d218fa2e738d37e014a9b3239b9aa989b9018a6a33f8f0bd02c SHA512 f704af322ebc192117c49d0cf8a3f217105beccb7b47d6361665470894ef7a9f91fc4b5f07cc9aff56e497bfa80953e40e39090c8394a095c61597756e333ae9
 EBUILD autodock_vina-1.1.2-r1.ebuild 972 BLAKE2B aaad2df1b51bdd684ca5fd9aaa54353b161e4e5d72b59210919349993fb6ad2c796f8b6bff4d420ad64e52273a26bf9f7d9b90f95387db5f7814352ebdb5be1c SHA512 123083cc13a05fd10627f9750274de9f7070e4068b718b4407230f9af22ead0a4f6ef33cda4b86a2d1e08856c31a58f8cc0d0ef8d861f196275332095885e44b
-EBUILD autodock_vina-1.2.5.ebuild 1034 BLAKE2B a123bd340d3c5763d39cad3e2d9d7afbd6e4e0d96d1041736978af88295c58645e3ea53e634f1bb41e905d54afa94e8baa784fd27d6a6f577915e8c3635acdcc SHA512 383fa58b584f9f3ec6e1eb403b1845d3e7cfd66e88b89e857ffedc4847444caede2953f581f20b7414d5a9ec20e3f8bc4c864ded5206b182eb5c9ea38055401e
+EBUILD autodock_vina-1.2.5.ebuild 1070 BLAKE2B 69e0e7fce39fa45ed6cf5dc01fef51a575353bfdd2cb5c333c2d2269cc38dccf20bac1c1b3caa273929e4848e9c66add90336dba767a9adc269d3d455a4428da SHA512 1bd3e7de0795caf8379a03becb1db12f7a24a83efa26336ac07355c09bda4633e36604dd52afe906064dcd479c93d30a1e664699be820ba9e92cf706bea75e6e
 MISC metadata.xml 1002 BLAKE2B 775eb10f8c916ff2b5655243224d1608a865228b1e300b636c793c1c86a4634a33fdda3bf4a8f56f43ad8bb734413963e490b738d2baf69168bb8dea6e3e6106 SHA512 0ea67a95d4bb8f90323ceeeced2d47f4732ee5fb3daa45d8690c13b71daf67729b33cdf3024a4706d2ee9e296b67474141125e95801b9f799228391571395532
diff --git a/sci-chemistry/autodock_vina/autodock_vina-1.2.5.ebuild b/sci-chemistry/autodock_vina/autodock_vina-1.2.5.ebuild
index e9edf1f9c991..dd396732c357 100644
--- a/sci-chemistry/autodock_vina/autodock_vina-1.2.5.ebuild
+++ b/sci-chemistry/autodock_vina/autodock_vina-1.2.5.ebuild
@@ -15,7 +15,7 @@ S="${WORKDIR}/${MY_PN}-${PV}/build/linux/release"
 
 LICENSE="Apache-2.0"
 SLOT="0"
-KEYWORDS="~amd64 ~x86"
+KEYWORDS="amd64 ~x86"
 IUSE="debug"
 
 RDEPEND="dev-libs/boost:="
@@ -23,6 +23,7 @@ DEPEND="${RDEPEND}"
 
 PATCHES=(
 	"${FILESDIR}"/${P}-gentoo.patch
+	"${FILESDIR}"/${P}-boost-1.85.patch
 )
 
 src_prepare() {
diff --git a/sci-chemistry/autodock_vina/files/autodock_vina-1.2.5-boost-1.85.patch b/sci-chemistry/autodock_vina/files/autodock_vina-1.2.5-boost-1.85.patch
new file mode 100644
index 000000000000..55906b093a49
--- /dev/null
+++ b/sci-chemistry/autodock_vina/files/autodock_vina-1.2.5-boost-1.85.patch
@@ -0,0 +1,21 @@
+https://bugs.gentoo.org/932237
+--- a/src/lib/vina.h
++++ b/src/lib/vina.h
+@@ -35,7 +35,6 @@
+ #include <boost/program_options.hpp>
+ #include <boost/filesystem/fstream.hpp>
+ #include <boost/filesystem/exception.hpp>
+-#include <boost/filesystem/convenience.hpp> // filesystem::basename
+ #include <boost/thread/thread.hpp> // hardware_concurrency // FIXME rm ?
+ #include <boost/algorithm/string.hpp>
+ //#include <openbabel/mol.h>
+--- a/src/split/split.cpp
++++ b/src/split/split.cpp
+@@ -30,7 +30,6 @@
+ #include <boost/program_options.hpp>
+ #include <boost/filesystem/fstream.hpp>
+ #include <boost/filesystem/exception.hpp>
+-#include <boost/filesystem/convenience.hpp> // filesystem::basename
+ 
+ #include "file.h"
+ #include "parse_error.h"