diff options
| author | V3n3RiX <venerix@redcorelinux.org> | 2020-01-16 16:18:18 +0000 |
|---|---|---|
| committer | V3n3RiX <venerix@redcorelinux.org> | 2020-01-16 16:18:18 +0000 |
| commit | 0704956f7256f1f618cc5e03af2c1dbd0e83dbc5 (patch) | |
| tree | 881671532c0c3c82ebd4523b6d6cbc8ace982aae /sci-chemistry | |
| parent | 21435953e16cda318a82334ddbadb3b5c36d9ea7 (diff) | |
gentoo resync : 16.01.2020
Diffstat (limited to 'sci-chemistry')
24 files changed, 73 insertions, 43 deletions
diff --git a/sci-chemistry/GromacsWrapper/GromacsWrapper-0.8.0.ebuild b/sci-chemistry/GromacsWrapper/GromacsWrapper-0.8.0.ebuild index e9bde2396c60..b80d49a156d5 100644 --- a/sci-chemistry/GromacsWrapper/GromacsWrapper-0.8.0.ebuild +++ b/sci-chemistry/GromacsWrapper/GromacsWrapper-0.8.0.ebuild @@ -3,7 +3,7 @@ EAPI=7 -PYTHON_COMPAT=( python2_7 python3_{6,7} ) +PYTHON_COMPAT=( python3_{6,7} ) if [[ $PV = *9999* ]]; then scm_eclass=git-r3 diff --git a/sci-chemistry/GromacsWrapper/Manifest b/sci-chemistry/GromacsWrapper/Manifest index a404a5fc9601..a32e2fcfe299 100644 --- a/sci-chemistry/GromacsWrapper/Manifest +++ b/sci-chemistry/GromacsWrapper/Manifest @@ -1,3 +1,3 @@ DIST GromacsWrapper-0.8.0.tar.gz 1205837 BLAKE2B 3627e56df0dc6ba86caac67795416c7c8c187aaa4fac545600d17dcd799cb153feaab61a0f0632e051c4e9c0b4cd74f8e165156873e36bc53571bec78e5fca61 SHA512 da7215216c9a2b52094bb7e43e04f1b429c4893ba67b4bd850fe68e99f338813392fd9d0aa1b19d3398c694be964bc2badbf1b3623420da929ee4abcef18026f -EBUILD GromacsWrapper-0.8.0.ebuild 815 BLAKE2B 4b462d20c936994c801855b55652850d0ce4a34ceaa9d8d007a81ef87473a7921958f8b431ddb09ec103414af6d37ce81bcc4aeb2dd2eae313d8176c218e3cee SHA512 30387145d076d73c3a73b8254b104312d60fad3c0daffc0ff867bde7c03e376490ca166adf8a948d75cbdaf956d7a8362eeb5f6f87ef08a1ccd10c08af8e5ea4 +EBUILD GromacsWrapper-0.8.0.ebuild 805 BLAKE2B c9da6368860e869a1f04ffc41397fb2992f8dbe28853bcab466d695efaedd7dae686d52f66e31433d39b643e1cddb693f39006991eb4eefd26819268f272d6c5 SHA512 e073d97ecb08684ef9b2631cca3693708ea291e2bb423930eeea31f8107e03b466ce8cd3321bea1faf12665572af2ceb070edeed3cbc789aac69ea6b5a043bdb MISC metadata.xml 482 BLAKE2B 2745b575ac325e9f8c53d53026ca0c67201f1519725c572813c0ad281b4a39399cbf93176e816646aa83f829c0981ee4457e3ab2232ed095f76d5a2068840912 SHA512 4f2efb8d263f20e50928e0c6f0913c65da746b5253a14658273c830b7f95ecc15620f92e87db9670adfd92792e96cc352af528ed4fa1e874977a744d2e15c6bf diff --git a/sci-chemistry/Manifest.gz b/sci-chemistry/Manifest.gz Binary files differindex f582eec3184e..2f2c1e4083c5 100644 --- a/sci-chemistry/Manifest.gz +++ b/sci-chemistry/Manifest.gz diff --git a/sci-chemistry/ParmEd/Manifest b/sci-chemistry/ParmEd/Manifest index 9a3e8ce8b7c7..40f5ac7b64e8 100644 --- a/sci-chemistry/ParmEd/Manifest +++ b/sci-chemistry/ParmEd/Manifest @@ -1,5 +1,5 @@ DIST ParmEd-2.7.3.tar.gz 34494858 BLAKE2B 8e3ac8776f30ac73b06fd2241e5d73ba54517805ffcef7cb2f71281248df4f8afdaa05c2186ff50ba0df45df313ebdecd69a4482c8339d41baf804c37069affe SHA512 a3444f915e188bcc924f28b6b4235246e2c063ae98881c48f6e13ebc685d085d6a1bcb61b29509a343cbe58369bc6233acc20ee620c6f1d42da2033772a12e07 DIST ParmEd-3.0.3.tar.gz 35159355 BLAKE2B 76b4655905276fe498f38c6a3bd483e89e95d3a339fbcd9ceb90d16f68d417b62e0aacaf18143d0b57167ee7acdc726c44324c844462af4d2385872210daef2a SHA512 60b8ee100a301fbddec8323a3dba550c96ffa09624f41e457d4b3941a4e4a15e903c3da6de24a5183731406f19f9e6436a2111d654bc902c0f06ac8b643acf09 -EBUILD ParmEd-2.7.3.ebuild 823 BLAKE2B aaa7479f94ba8c99f788b19e60bef2177b6ff07a0b5ae1aaa4587fb3720aac07a5b50940ca267236937850d0c06a7900d47c753ef53137c7a7706e859a71dc15 SHA512 66eed20446dd039ca0ee9f75ff341f6a9cd0cf16a7ca64606bd3cccd24824b0b1b537e48c95926e407d8af2f6602cfca18f4c5097e5089ac77525c6cc208b8fa -EBUILD ParmEd-3.0.3.ebuild 824 BLAKE2B 7c362d79a7a0c467038d667d9f5849b77714725f9dc4feebde1389bb3c9be42651ba970679a8820c58221ed0e93991fad5b80b3da1c234655ef2d633bd3bb9b8 SHA512 974004c5b1186a1c0527a9ffc2a8762eb0b954c609d691b63eed4c139fcd8a0cf51d3c0d3fc695c399b8cea1bc22bdfaa9f4851ab974aad150286a47b510e0d8 +EBUILD ParmEd-2.7.3.ebuild 817 BLAKE2B 11ac051d0c48b5f1a495b5d51762ba7abe352802e26a62ca66dd8a503fb4ffcb2cd95cfd64ac8e3d9010a9ca6ea76ca307541faeba69ced29534858725ef40dd SHA512 16a9979dbbb21e724655a3e536b7ac3edf73a6f85c607ca96d708b49dd73822056e263e77b9bbe049aa5273f9b0b9b05e1bf5d27fc14a2bffa8d475c8829ecee +EBUILD ParmEd-3.0.3.ebuild 818 BLAKE2B ef854aea1fe59b8724a62311e22442313a7ce1002a86f02410f3c7c9788eae80954ce23f8c2c5ad0902842cf3310864e83a79fa55908b5dbf1bea06ae67d3422 SHA512 ff1b52ffb0e74fa8941bd78bce65b2fd2bca2e3eb1d63bd26c2ecc64c9a9d8c004d4e9bc6b6bca3c34a8495d20ed30814526b78d101f23cb643c263ae19466df MISC metadata.xml 468 BLAKE2B 2e3781c6ebea297fb8480c2d54be22da0e8d6906607513e3b78fe89a926cf691048fb90576cadde7321d964e8269950437f48bb54270c9a1bd487bfe3ce30b84 SHA512 47e3516aabe02112a52e851ac9294a0096001373d546462f9185754356c72dd37a0a8efa3b40311e43e27e2953ea5879c1141488649f3faef0aa43a692205499 diff --git a/sci-chemistry/ParmEd/ParmEd-2.7.3.ebuild b/sci-chemistry/ParmEd/ParmEd-2.7.3.ebuild index ab581daea0c2..b7a964b81652 100644 --- a/sci-chemistry/ParmEd/ParmEd-2.7.3.ebuild +++ b/sci-chemistry/ParmEd/ParmEd-2.7.3.ebuild @@ -3,7 +3,7 @@ EAPI=6 -PYTHON_COMPAT=( python{2_7,3_6} ) +PYTHON_COMPAT=( python3_6 ) if [[ $PV = *9999* ]]; then scm_eclass=git-2 diff --git a/sci-chemistry/ParmEd/ParmEd-3.0.3.ebuild b/sci-chemistry/ParmEd/ParmEd-3.0.3.ebuild index a2a476a1d5ef..37f959acdc6e 100644 --- a/sci-chemistry/ParmEd/ParmEd-3.0.3.ebuild +++ b/sci-chemistry/ParmEd/ParmEd-3.0.3.ebuild @@ -3,7 +3,7 @@ EAPI=6 -PYTHON_COMPAT=( python{2_7,3_6} ) +PYTHON_COMPAT=( python3_6 ) if [[ $PV = *9999* ]]; then scm_eclass=git-r3 diff --git a/sci-chemistry/chemex/Manifest b/sci-chemistry/chemex/Manifest index c9b0942c3308..cfe87b5d08d2 100644 --- a/sci-chemistry/chemex/Manifest +++ b/sci-chemistry/chemex/Manifest @@ -1,3 +1,3 @@ DIST chemex-0.6.1.tar.gz 1449216 BLAKE2B 6b7f7597b09cd43b9bec89b6359d1f650fdd7d4f3a373e706da80dafaf438417458f34af6bc378442b5b4a84cb8222103ebc8026c85583e8dece3fad0dc77204 SHA512 40f538ef9c162759c7a6863886da8d46746ac362fc19154f0a5f3dd8703f7fea7397c3f34092c86dbce486c452e0d3b09a76e4c11ae119834d7ca4912e7f3fdf -EBUILD chemex-0.6.1.ebuild 824 BLAKE2B 493c9d107f97140c1288f8b69dbb25b032201a3e98f90a7e320b31e238b4e6d30ab0a163a20b0822c1d2e5704b8af375b95bf6886d4539ae87e722d64b162d77 SHA512 b0ae3e38b11b0308d17c32ae8a0c21610fe752e7461465d8c4dc42499af63f2f1ded8a6a5f389e4ba85fe182811da4449bf01b77249bd82c5ea61d1932f82dac +EBUILD chemex-0.6.1.ebuild 876 BLAKE2B 9eea4ff107c30077d5b8b8a62dc7c5883f3eb635f5ab38ec900b14bb7970ce0c58da7b5d6dde5fde5915d1aad816b32765967a902205f7f4f0163eccb25349b1 SHA512 fef14f301089f0ef82afee0312b8680bb17766cff97da8876063493097e778b962a08ac82856a380610b307408fec42e1ea18ea28e1e2da50a50eade8e0de823 MISC metadata.xml 216 BLAKE2B 0fbfa16661345362ff89f87adc0bb42fc5f5c9145cdedb36f3f537b39af4023b91c4dfb0d8e83a4f9ac963141f594ba8ae678371c338d992a96e02c11fd84195 SHA512 628a69805356b7458edaa2297901224178b016477a937f77e692a78ce3e7a0b6d2d7b4c4b7e70d0185d7112e6a59a5131e07d8c950e90b9c8722471d7511afc6 diff --git a/sci-chemistry/chemex/chemex-0.6.1.ebuild b/sci-chemistry/chemex/chemex-0.6.1.ebuild index 28af7461892f..9e4f47aafc99 100644 --- a/sci-chemistry/chemex/chemex-0.6.1.ebuild +++ b/sci-chemistry/chemex/chemex-0.6.1.ebuild @@ -1,4 +1,4 @@ -# Copyright 1999-2018 Gentoo Foundation +# Copyright 1999-2020 Gentoo Authors # Distributed under the terms of the GNU General Public License v2 EAPI=6 @@ -18,7 +18,10 @@ IUSE="" RDEPEND=" >=dev-python/matplotlib-1.1[${PYTHON_USEDEP}] - dev-python/numpy[${PYTHON_USEDEP}] + || ( + dev-python/numpy-python2[${PYTHON_USEDEP}] + dev-python/numpy[${PYTHON_USEDEP}] + ) >=sci-libs/scipy-0.11[${PYTHON_USEDEP}] " DEPEND="${RDEPEND} diff --git a/sci-chemistry/nmrdepaker/Manifest b/sci-chemistry/nmrdepaker/Manifest index bc0f06db9c2d..f8e2fe932f0f 100644 --- a/sci-chemistry/nmrdepaker/Manifest +++ b/sci-chemistry/nmrdepaker/Manifest @@ -1,3 +1,3 @@ DIST nmrdepaker-1.0.tar.gz 2233765 BLAKE2B 9b638a36fc50d7c020d56833b6ca78d7079ad357f42431088c4c0735b7e9ce63a0e6318915ec751b42e6628c0da76b93ca16ffea1ffe6b311480e8d278ce1a1a SHA512 9d1a9048a85f85eacaeeb582c5550345efa673b1f517dad121e2b2e19125f93e71a26f2f8240ea9b8a06489814eb833e7b3653f882a46bad699b01fd1aa4299f -EBUILD nmrdepaker-1.0.ebuild 794 BLAKE2B 3dc1817313f90d1e232fba5839917ee64f78cf97bb8c094e28dfe4d656a91db31d16618637e1897729a944e3fc6a1c9de95530bea53a6c0666bbeeabd32d1dc8 SHA512 48e4de3f0c960e33057d252c2fc0dc48dfc45b7973f5989da5b22bec5f35a802ffced2c871ac5fd6d4880d4eb662783935279036093b0b06d7738e397690397f +EBUILD nmrdepaker-1.0.ebuild 846 BLAKE2B 5366d7a88e40be247ddcfc6fd9e01d9da3e9c9282e58a42a53f9ac39865715fd76afaa265b89c509740d980355fedfbcdabac0bb08606c1c8444f5a2404c1e07 SHA512 c2777dc917c092e44eb0306faebdbde99e4103fa745684f936b58b4eaf8e2863079378cb34d6576cdedcbdbffd7f704d0527cf0ab659c7afd9168b53f213c238 MISC metadata.xml 216 BLAKE2B 0fbfa16661345362ff89f87adc0bb42fc5f5c9145cdedb36f3f537b39af4023b91c4dfb0d8e83a4f9ac963141f594ba8ae678371c338d992a96e02c11fd84195 SHA512 628a69805356b7458edaa2297901224178b016477a937f77e692a78ce3e7a0b6d2d7b4c4b7e70d0185d7112e6a59a5131e07d8c950e90b9c8722471d7511afc6 diff --git a/sci-chemistry/nmrdepaker/nmrdepaker-1.0.ebuild b/sci-chemistry/nmrdepaker/nmrdepaker-1.0.ebuild index 5ccd2c4508b6..29a13632c888 100644 --- a/sci-chemistry/nmrdepaker/nmrdepaker-1.0.ebuild +++ b/sci-chemistry/nmrdepaker/nmrdepaker-1.0.ebuild @@ -1,4 +1,4 @@ -# Copyright 1999-2018 Gentoo Foundation +# Copyright 1999-2020 Gentoo Authors # Distributed under the terms of the GNU General Public License v2 EAPI=7 @@ -18,7 +18,10 @@ IUSE="" RDEPEND=" >=dev-python/matplotlib-0.98.5[gtk2,${PYTHON_USEDEP}] - >=dev-python/numpy-1.2[${PYTHON_USEDEP}] + || ( + dev-python/numpy-python2[${PYTHON_USEDEP}] + >=dev-python/numpy-1.2[${PYTHON_USEDEP}] + ) >=dev-python/pygtk-2.12:2[${PYTHON_USEDEP}] " DEPEND="${RDEPEND}" diff --git a/sci-chemistry/nmrglue/Manifest b/sci-chemistry/nmrglue/Manifest index 5c2bb9440789..28eb26223654 100644 --- a/sci-chemistry/nmrglue/Manifest +++ b/sci-chemistry/nmrglue/Manifest @@ -1,4 +1,4 @@ AUX nmrglue-0.5-nohyper.patch 1408 BLAKE2B 8e91e270183ce8f4c361fd3577dc4942b2afab81ee8f59df5c8dd9056dbf639653d2e84f9dc04026636dda98e28a244586ba5bc2cd4ed5c43c8a31d0c0cab4d1 SHA512 f68ea345f2692123e24fc41335001a0a8418b84003d864e9d673935d4a517aa82353e08f4f554b33ddc18cea96c9442827715cdabad6303dc60f5dd18cd103dd DIST nmrglue-0.5.tar.gz 142604 BLAKE2B 9a018a73bea46176fc06042013cb23b3eeb962df8a595388da536d17f1d2d4d550065c5492df28de860ea1290314d2fa1110af349be0c2a8b1b31677b3e4afbc SHA512 2a4b94eb6bae966000bfdee4dd16f4e312568915fb5f19f59f84c6deff690703f54f76366d3f9299f7ec187192ff64f2bf62836617a424d4c5c895c67d819af2 -EBUILD nmrglue-0.5-r1.ebuild 749 BLAKE2B fb7edbcd7e664e3ddb3f51d4c569abe49080262805ba1d9c32ee2ea61f64af26e4fe8405118e7fd5d37147f90aab955566b991a439cde3e2bbc5ed5a8b941003 SHA512 b62d23ba30bd96b65760947010bfb1d519057777bfb4bcc2b8a53bb6625dada73a2d20f16a8c4e2e9d93c1eb341d6fc9318db69972f889c788c0c5a10d5876be +EBUILD nmrglue-0.5-r1.ebuild 740 BLAKE2B 1659c4d8ee0d0dd8c049aff32953694669d02259587443dabc59fd34d1616b84195f621647789e0f05e397121b6f03c2b859ab248b5c2aa8510fbbb18b7b2ae5 SHA512 295058d83b37c64df02011be40d1841714c6870306b08f8852c00e95ca1c182f1690d29c2b2b72acfefd1c10bc257f6182876c8729cabc8e9cf95ed1ade5e807 MISC metadata.xml 1338 BLAKE2B 480651ef6112e93e3c70e734f4ca7d7b24653109f503fab6a340c9dc246b881b5ab103b90f8ffbc92a6d5352b399c15a33072292e549b4ffcc2689f049996cfd SHA512 7defa016b2c5f51327f282ef8dbb5f99767e554112baf10d72a6c86462d86bf7bd3129226340bbdb00f9e95b2349fc3594b6d0d8cd0175457bbb5f034e31aa7c diff --git a/sci-chemistry/nmrglue/nmrglue-0.5-r1.ebuild b/sci-chemistry/nmrglue/nmrglue-0.5-r1.ebuild index 49d670980a09..78539bfaf771 100644 --- a/sci-chemistry/nmrglue/nmrglue-0.5-r1.ebuild +++ b/sci-chemistry/nmrglue/nmrglue-0.5-r1.ebuild @@ -3,12 +3,12 @@ EAPI=5 -PYTHON_COMPAT=( python2_7 python3_6 ) +PYTHON_COMPAT=( python3_6 ) inherit distutils-r1 DESCRIPTION="A module for working with NMR data in Python" -HOMEPAGE="http://nmrglue.com/" +HOMEPAGE="https://nmrglue.com/" SRC_URI="https://github.com/jjhelmus/nmrglue/releases/download/v${PV}/${P}.tar.gz" SLOT="0" diff --git a/sci-chemistry/pdb2pqr/Manifest b/sci-chemistry/pdb2pqr/Manifest index 1bc3b86f9d6f..87ce3397495f 100644 --- a/sci-chemistry/pdb2pqr/Manifest +++ b/sci-chemistry/pdb2pqr/Manifest @@ -3,5 +3,5 @@ AUX pdb2pqr 263 BLAKE2B 3cbd33cf9fb9fd6469c71d8d167ed0fb85ad7b87b6caf27dabb2490b AUX pdb2pqr-1.9.0-flags.patch 1392 BLAKE2B b6b6ac64f98944d85fc93c076d7258c8f980a0391d2cf086edc46bca3f4ef15a5cb720ef8ae2dc38007962a462fb88e92eb4f439c4f3267a5d1d83de5a848dd6 SHA512 deed0aef88dc43515745204f2b4209bd6b42702d9004d48797d642b8f497229424bd0bb92017982cec54c448ea35de563bd42017cd5dc042840acae8495d135b AUX pdb2pqr-1.9.0-install-py.patch 578 BLAKE2B 91ad4b40ce3d13b574ad6d9ea84e55b08803fa018490a7327dae5621a371adfeda509188c049144301cbc023f4407f6c0daf7b57e7d3c10d95d78ab570a6f540 SHA512 902ad717e32790e9c691851dc4b92412f07ac79caf74b2b5794a10fa75cca7fa19e8814df4d8ba71bd2ecc98a3d777d0b79e6e43009171a32e8c99756d81d4d2 DIST pdb2pqr-src-1.9.0.tar.gz 9051969 BLAKE2B bacb2c65d319fb918a7a15b772c250398ffa991a93ee731ec15c8ae907304daf57282bf83c24f84d11945349a7f93f6f934575c117d4ce24d6530f14e60f3730 SHA512 7f3f191cca9879a0e166e82700c706f8c99bb66558a218e54845f10c3324b6c45d413da80b0782d96a8d56df1463262609db075aba3768db3942cb928ee7b98f -EBUILD pdb2pqr-1.9.0-r1.ebuild 2908 BLAKE2B 6d605543d94ae2ad9a0b8184854c01bc007908dcb5af30da444d6ee5ec14ffeb9a0a73c0e832ac6d7b93cd1c0f3ad797ef8a09521df9eede8f010446a3483f2b SHA512 61df8503529a0032d72c068c1abdbb54bb2ce504bcd8e02dbac080901a30dc0aff9d7a848c21f0c7e6b1108e1574fa03d9aa3a73d68f4def6a790e355ec5611e +EBUILD pdb2pqr-1.9.0-r1.ebuild 2961 BLAKE2B b8aa0bba7cb9d94f8a8fcc3246ae63d6c8a92f8148fbf28b73b683425b00bedb58069250b06e6e08e21ca483343723738c70c8c7e19309559d05c032c5bb4d62 SHA512 5e613fe7a2e927634fde7f685a8ab9429f171d469280a21c8004dd718a22e4ed5bcfb30e0d5ea6426744e0a75f4ffd366ae93d7c458d6bd72e0269e7dcb006a4 MISC metadata.xml 511 BLAKE2B 70a1bf9ff6db44bdbae39b1f58ac5b80769738b2ce8fbb19b3bcb9fbf7cec2a9eab215a7a922025b9110673cb834255240adf10613fd78a8fea47fa7be4fbba9 SHA512 11a010eea3bbbaaf4150a23dadcd10c45737745d51a3341cd7e69cc8537215f313d1ab57059eff265e73e34aeaef435585bb652f5497508dd12b99f67b8580c0 diff --git a/sci-chemistry/pdb2pqr/pdb2pqr-1.9.0-r1.ebuild b/sci-chemistry/pdb2pqr/pdb2pqr-1.9.0-r1.ebuild index 46766b7715e6..ad95f8f410fa 100644 --- a/sci-chemistry/pdb2pqr/pdb2pqr-1.9.0-r1.ebuild +++ b/sci-chemistry/pdb2pqr/pdb2pqr-1.9.0-r1.ebuild @@ -1,4 +1,4 @@ -# Copyright 1999-2017 Gentoo Foundation +# Copyright 1999-2020 Gentoo Authors # Distributed under the terms of the GNU General Public License v2 EAPI=5 @@ -8,7 +8,7 @@ PYTHON_COMPAT=( python2_7 ) inherit scons-utils fortran-2 flag-o-matic python-r1 toolchain-funcs DESCRIPTION="Automated pipeline for performing Poisson-Boltzmann electrostatics calculations" -HOMEPAGE="http://www.poissonboltzmann.org/" +HOMEPAGE="https://www.poissonboltzmann.org/" SRC_URI="https://github.com/Electrostatics/apbs-${PN}/releases/download/${P}/${PN}-src-${PV}.tar.gz" SLOT="0" @@ -19,7 +19,10 @@ KEYWORDS="amd64 x86 ~amd64-linux ~x86-linux" REQUIRED_USE="${PYTHON_REQUIRED_USE}" RDEPEND="${PYTHON_DEPS} - dev-python/numpy[${PYTHON_USEDEP}] + || ( + dev-python/numpy-python2[${PYTHON_USEDEP}] + dev-python/numpy[${PYTHON_USEDEP}] + ) sci-chemistry/openbabel-python[${PYTHON_USEDEP}] opal? ( dev-python/zsi[${PYTHON_USEDEP}] ) pdb2pka? ( sci-chemistry/apbs[${PYTHON_USEDEP},-mpi] )" diff --git a/sci-chemistry/pymol/Manifest b/sci-chemistry/pymol/Manifest index ada63596e3b8..96c47bd5615f 100644 --- a/sci-chemistry/pymol/Manifest +++ b/sci-chemistry/pymol/Manifest @@ -1,6 +1,6 @@ DIST pymol-1.8.4.0.png.xz 19528 BLAKE2B f3d23d4cedca3d8bb96b20646a548da4be570697e3346a11b01c5c3599b536ba4697be08472dfa8a4f6533167defc1a37a1de332931a73857319cb28fd42cd2b SHA512 40bb0d3f226476f6e047b5361956aad955232a97641474765eaa5204f0539aee3810e0266213618a45364f9f31f6eb18380b17e0c79f64065f7b62a9016caa7c DIST pymol-2.3.0.tar.gz 10448674 BLAKE2B 0d508587d880ce7f2e8a0481bf664e6bfe6eb1d68b0f48b9266cde756824bd8c0144d7243e958bbc5e571d60fca9dafff125d81a8a3d32107e78ad2ff8dffc05 SHA512 e1dcea1c97bcd9045d3543e92902f240e6affbf61a38e8d2a0be04309e3dbabfe1a869847d1423b3151008978d4c305bbf3ce994fc9d453c0063ce020100c133 DIST pymol-v1.8.4.0.tar.bz2 8717344 BLAKE2B a4cfb95eb40a3cd3da5b8cfd4acac7255997f9a3e49ef7e7e1d4c13f36e4aace462a054c326bbaadbc99f22286be878a6d5c518149760b5c939ce9362d4b8cc3 SHA512 73a810adfc31adaf0f3fa25512084882c87b0782c8af716ac0203a5b5b7f0b9fedfbce3d129bffef7b52044e92b0542e683966b2acf961c4dac17fbba72dd7fe -EBUILD pymol-1.8.4.0-r1.ebuild 3009 BLAKE2B c3bbbab87fdb018448d0150e130abba4572280e2fbe7473266477a5c32cc37a5c8907cfd0f99e001da7fa488dd195f2f8e084c5e0443664cd85741ee85990888 SHA512 d108605302c023c077748aaa21c2cf0a1e8a5d05505315de2937eca112036bd60263b7d704baffe605956a15ebddeeb4c3073a857810f1a87f726a95b5397588 -EBUILD pymol-2.3.0-r1.ebuild 3134 BLAKE2B 9013a9ac9e66afac23f3a6c413e6fe484193d6fed0a546d8f07a274fdbc49f847cda50fe0d06d427677a61cd41d7a6fa3547a1f2d8abb84984be090d39d07ad6 SHA512 cff3bd25db982b6171fa531479ea9890c8ef60c869e0265a36b59c357e4bc3df48e124a69daf0e011c73f7ebf6f44f3fb54990df285ecb408332f239ceb958f8 +EBUILD pymol-1.8.4.0-r1.ebuild 3062 BLAKE2B 98914bfee561a1f5970ca47180ae5a23ac9c547069bfa421041c4e19eaff9820ab148038406971ac8e79801f99fdd92f90e7be5249081ba1be200451efb92f30 SHA512 69714e4d11ab56af06fee425e23659b9855e2f8e39293888a57720e6c1f4dad8f823cb77f203f7bb55f3b402f899e810c73af150106621c2e8ee6cd0c4250e5f +EBUILD pymol-2.3.0-r1.ebuild 3190 BLAKE2B a72434867a8589dda7a334f71e1aaa58f16d3caea1eb1615c44c2b813b1d0b84ed308369eb89c45251daf7bfbabed470e7d5abe42334b3fe28b484217fa29653 SHA512 5c2d08baa9407a2abe733d1753e622ea450b7c939b4f57d8e47adb5f57ac5a5e2b95264b6876698c70a5af926d378d75b6ba4ae02c85affbcfda7327d718ea14 MISC metadata.xml 439 BLAKE2B 68df7dfc8ca3d4d4b18b419532bade69491f2e9362f10ae2397c804132b7fc9cd08dcf9703c0a89c44588c570e0c0c1bb9bffb7394d51faf1283142dbc5f70b3 SHA512 f5a3eded9b12fa715ba2e6e10b41c75d9bd823ca0dd40acbffc3f5bfc4b36c687f720b1a4e119b4540a31faf849985778cbd72b0b2cd35af8c52ca0f808d71e4 diff --git a/sci-chemistry/pymol/pymol-1.8.4.0-r1.ebuild b/sci-chemistry/pymol/pymol-1.8.4.0-r1.ebuild index 0bcafb2e3223..f60de8dcb189 100644 --- a/sci-chemistry/pymol/pymol-1.8.4.0-r1.ebuild +++ b/sci-chemistry/pymol/pymol-1.8.4.0-r1.ebuild @@ -1,4 +1,4 @@ -# Copyright 1999-2017 Gentoo Foundation +# Copyright 1999-2020 Gentoo Authors # Distributed under the terms of the GNU General Public License v2 EAPI=6 @@ -9,7 +9,7 @@ PYTHON_REQ_USE="tk" inherit distutils-r1 eutils fdo-mime flag-o-matic versionator DESCRIPTION="A Python-extensible molecular graphics system" -HOMEPAGE="http://www.pymol.org/" +HOMEPAGE="https://www.pymol.org/" SRC_URI=" https://dev.gentoo.org/~jlec/distfiles/${P}.png.xz mirror://sourceforge/project/${PN}/${PN}/$(get_version_component_range 1-2)/${PN}-v${PV}.tar.bz2 @@ -22,7 +22,10 @@ KEYWORDS="amd64 x86 ~amd64-linux ~x86-linux ~x64-macos ~x86-macos" IUSE="web" DEPEND=" - dev-python/numpy[${PYTHON_USEDEP}] + || ( + dev-python/numpy-python2[${PYTHON_USEDEP}] + dev-python/numpy[${PYTHON_USEDEP}] + ) dev-python/pmw:py2[${PYTHON_USEDEP}] dev-python/pyopengl[${PYTHON_USEDEP}] media-libs/freeglut diff --git a/sci-chemistry/pymol/pymol-2.3.0-r1.ebuild b/sci-chemistry/pymol/pymol-2.3.0-r1.ebuild index b84c27698061..6e8433b403ec 100644 --- a/sci-chemistry/pymol/pymol-2.3.0-r1.ebuild +++ b/sci-chemistry/pymol/pymol-2.3.0-r1.ebuild @@ -1,4 +1,4 @@ -# Copyright 1999-2019 Gentoo Authors +# Copyright 1999-2020 Gentoo Authors # Distributed under the terms of the GNU General Public License v2 EAPI=7 @@ -8,7 +8,7 @@ PYTHON_COMPAT=( python2_7 ) inherit distutils-r1 desktop eutils flag-o-matic xdg-utils DESCRIPTION="A Python-extensible molecular graphics system" -HOMEPAGE="http://www.pymol.org/" +HOMEPAGE="https://www.pymol.org/" SRC_URI=" https://dev.gentoo.org/~jlec/distfiles/${PN}-1.8.4.0.png.xz https://github.com/schrodinger/pymol-open-source/archive/v${PV}.tar.gz -> ${P}.tar.gz @@ -22,7 +22,10 @@ IUSE="web" DEPEND=" dev-libs/msgpack[cxx] dev-libs/mmtf-cpp - dev-python/numpy[${PYTHON_USEDEP}] + || ( + dev-python/numpy-python2[${PYTHON_USEDEP}] + dev-python/numpy[${PYTHON_USEDEP}] + ) dev-python/pmw:py2[${PYTHON_USEDEP}] dev-python/pyopengl[${PYTHON_USEDEP}] dev-python/PyQt5[opengl,${PYTHON_USEDEP}] diff --git a/sci-chemistry/relax/Manifest b/sci-chemistry/relax/Manifest index 7d477d91d72f..c12f1f8a23dc 100644 --- a/sci-chemistry/relax/Manifest +++ b/sci-chemistry/relax/Manifest @@ -1,3 +1,3 @@ DIST relax-4.0.0.src.tar.bz2 105659752 BLAKE2B ce5fc9b7f31787f2189e75a543f8ba6fe3cd59ce7382c6c0f79c419b9f71b2d09bd16685e7fed3c9e3205be531efa2a8dc1cce707e77e2386d2a9f7a71b4b0c1 SHA512 28b5ddab2c83f95d7e1a502d05b5d3c93337fece68a1fef95ec8978f61fccf24cb37528cfef27cb20d132033535f4120b23cc76a75f34f52b27df17116351f8e -EBUILD relax-4.0.0-r1.ebuild 1591 BLAKE2B 58569336b45732cafd601b30e8ef2db0666eceb49c4d5ee5b45aeec1cfec7cf4505f1b77c532bbfc550c2111e439bc8cf5b3fc686bd6216c0627cbad6dd5c0ba SHA512 fbb5be5c93e7dafe75f9c3a13a0d849fbf494a7018a35389b9284251f8231c1174c3cf1469ba24781ca030bc729ecb225edffed9db6305c83b37299fe373bc4c +EBUILD relax-4.0.0-r1.ebuild 1647 BLAKE2B 47d35d0a658255c16ce7fde5c6afdf1ac80f894e9de57b4a55c7e44c61db164f50511984abbaf1b8ad98bebef132836bcbfcd07d8ddb70f7c5fe17469185df62 SHA512 88d260d222dbd1c25b327aea72e37cacb209d3dd172aefe5c15d5def95905dd7168d75d15cb707ebc4ed3863838e3c6b3a4764679e249f0ad6d689ad7cabe501 MISC metadata.xml 1373 BLAKE2B d5a9e36f0412ef757a23aa4991986bdc394edc035f59b0206b246affc884417eb8446a598b23054972c97dc5d883cd0242e306f9e8d61620c144939845c0bcf1 SHA512 575ccfdae744fc5d97e795a22989b377954edeacb8ec4887d987a59af813f126551743c4b29b9c2b4a26a1840f05d42fb26fd39b7ae9b38e24373fab18c0270e diff --git a/sci-chemistry/relax/relax-4.0.0-r1.ebuild b/sci-chemistry/relax/relax-4.0.0-r1.ebuild index 5a99d4554ba7..606c454f1b12 100644 --- a/sci-chemistry/relax/relax-4.0.0-r1.ebuild +++ b/sci-chemistry/relax/relax-4.0.0-r1.ebuild @@ -1,4 +1,4 @@ -# Copyright 1999-2019 Gentoo Authors +# Copyright 1999-2020 Gentoo Authors # Distributed under the terms of the GNU General Public License v2 EAPI=5 @@ -10,7 +10,7 @@ WX_GTK_VER="3.0" inherit eutils multiprocessing python-single-r1 scons-utils toolchain-funcs wxwidgets virtualx DESCRIPTION="Molecular dynamics by NMR data analysis" -HOMEPAGE="http://www.nmr-relax.com/" +HOMEPAGE="https://www.nmr-relax.com/" SRC_URI="http://download.gna.org/relax/${P}.src.tar.bz2" SLOT="0" @@ -25,7 +25,10 @@ RDEPEND=" ${PYTHON_DEPS} dev-python/Numdifftools[${PYTHON_USEDEP}] dev-python/matplotlib[${PYTHON_USEDEP}] - dev-python/numpy[${PYTHON_USEDEP}] + || ( + dev-python/numpy-python2[${PYTHON_USEDEP}] + dev-python/numpy[${PYTHON_USEDEP}] + ) dev-python/wxpython:${WX_GTK_VER}[${PYTHON_USEDEP}] sci-chemistry/molmol sci-chemistry/pymol[${PYTHON_USEDEP}] diff --git a/sci-chemistry/vmd/Manifest b/sci-chemistry/vmd/Manifest index 582201b861ab..b97cc2703b74 100644 --- a/sci-chemistry/vmd/Manifest +++ b/sci-chemistry/vmd/Manifest @@ -6,8 +6,8 @@ DIST vmd-1.9.2-gentoo-patches.tar.xz 14896 BLAKE2B eb7c7fb982602f37bd8374bf8458a DIST vmd-1.9.2.src.tar.gz 34903084 BLAKE2B f7f7048ef7bb72a8b0dcae955c7f90691085158c38a59229d5b929a4b52d3148bdb2f40084cf8c4544f01cb8bcb57de1d98a90bd17568a07c4ebb8f6985cec9b SHA512 b232b743d4ea97dcf76e3005e1c8716d7138602edc078c4846026ab67759c8559af956182cb1acf3c85890db10b6f658ac9c269d432f2595612cf376d6d505ef DIST vmd-1.9.3-gentoo-patches.tar.xz 14804 BLAKE2B 64e5df40ed88c23c924d32636495f0383590f91dbb714e64c73551072bb50d72b4e5f188fb2da58d32e84b4bc96ff0297d7ff1bf02b0481198901c4e12e4ee59 SHA512 5d506d4df5ca4a3edb33d77aeeb440fcb4750a250c77103b99f385f356eb9d71d954173b981d3a50f7a714cfc872587e5040868904e50fa1f6fd69d7e4d9f1b1 DIST vmd-1.9.3.src.tar 129566720 BLAKE2B 848f3280d51765dcd18722dd233e0cdee3b7c0ac3dd48324260ebe1604ba781ca0a1fe4cae6652501d23d5d41712020e17dbb6bc21a1856eb3289a4aab6b774b SHA512 0502df1e8b60c570ca88b779b4153acfaa599a78df53fa96fca36301bab902864118332b5524ae7d170d3a9e429cf1e13d69e1197268b5e841afc0bb56a737ba -EBUILD vmd-1.9.2.ebuild 7155 BLAKE2B 734137c1a02d76da109d35faf11f29138a8e48dda6d84b7151f93f2095481127f136a5f8954a80912c85ae7031a01c3374783a042bf5461fd9d1049b577a082b SHA512 3f9fc1f4cc8f6f5031de74a8211db2a9e11d07de110689832d408c343a307ba25efa354f5862d4e6d8d06d3d18b567820401fc9fcdc8818f65a33ea24a3c657b -EBUILD vmd-1.9.3-r1.ebuild 7512 BLAKE2B cfd3259efcf3457e520f8f9ebf809373a99b6d6d5d3ab36192bf7ddd694835d7dd5c113957591d9041b583e58ac419f6cb8649f24ded0e62c89cabf056d45020 SHA512 cb0fc6cbc37c39351d51a3535569adaa69f4aee81942c0eeb83fbd7f1ca5aa3005bc8c87a74002869cc4fd81fb917601ae1bfd0a3dfd474fcf345f696cfd7d21 -EBUILD vmd-1.9.3-r2.ebuild 7693 BLAKE2B e6a96e06546f562448d4c77ca4f5626c878b69a1385edf1ed5f1b01d388aae2f19a710cadd3c3da66974bbc6d3c5c075e220b83faee8b5d626d15c73d372737a SHA512 8ab709222532622b87720fefc80e0c057c23bad5a26bb812cf7539705493c04202980545639bd8e62ef855fca9c850c0e7d825b3ec323aca6fc9a5cdf837d84d -EBUILD vmd-1.9.3.ebuild 7110 BLAKE2B d8ad6f495aaacdc4727e2c0e5d950a9670478aba7b55e62ed7074f06ad26151468f0f55a0786ce9dba80a181e7c36e912eaeaaa9ad7ae660739c65f482337c97 SHA512 c0eba398b6a815a59c9d8708dc796273ad3211ddc8e02aee8333f00f42f095c4d8999aaa246665ceb9282d2053c0631dc3c8ed7b60981d88ff9f8a2badf6b89a +EBUILD vmd-1.9.2.ebuild 7210 BLAKE2B 939b500dd5a0b9d8c0d3c5aaa55a7fe82a5b3c5b92da1d8a422a0c9dbfce8141d121884c5028df44f74f3c5f0c4ef7d6b85fa47cc7adbbf58db4a449d224c74a SHA512 1c8ae6a79494116d5e07cd98921c35ade1bdf7b209b673c9360d0a4edb4b881b8a000eb4c8c0b64d51616011c2e8a7858ba7ce348877eb897882a459b9688cad +EBUILD vmd-1.9.3-r1.ebuild 7567 BLAKE2B b6a6fd153b890881be02c2a5cdc085802cb356658939401b7958e65f375f763d84872fc31b12fb21b195a810247e1624ae7a123bbf417fdd05ad4288a23c7d8c SHA512 48ef4d47d68211f7443be546566f20e4bbebdf6948027c6649d1730fb0b77e98d540a26a0ab18000a6937ae3a536b9cdefe2bc0d4c7c0724dd63f0eacd63c1ed +EBUILD vmd-1.9.3-r2.ebuild 7748 BLAKE2B 2f0d785b37f195b6b87dd3d16902a11b899aef466134604d985f7d55380c75b471ea9540a19799cdf0b8316c709fb9453b3c041aa73c4ae623719ef1cd118fa1 SHA512 0321b3fb46edb1224ba133dbd6798ccefe5376a8a2d8fb71d416b1c1401f2676f25003f73260a70cf695c25e2b3ed32cfcea79f1c0721b193d4584db0ad1d8d1 +EBUILD vmd-1.9.3.ebuild 7165 BLAKE2B fed03484e69abef1d82f52985becb144642141b18d01993f58073a4063f91e7d89cc45a506573cec2a523131eb0d75033cdd4cc3595d14bd491fca60f46540ab SHA512 83356c309cd1332a13677ca086394de9adb741e167c40f80b8585545c4c7931ad7108a80ddab6cd25aa71fb843afb11b2e12264098dd9a4933e76fac79005684 MISC metadata.xml 778 BLAKE2B 6c4202950f57a4d7a3004e966c761325a0a31ab19fe06a6bd69882bd685e41424953104ff653c03d6cbbcb60bb9aba45fbcec43cd228c4bb57fcb1c63a2bd881 SHA512 b967b71fb9f1b47a9d3b69e6958dfb0314a9f071dade7ed1876e91dfa73188748faf11ef832d240a71745b36a30422bde79de2e9ff8e5ec6b6da4b11b40d19c9 diff --git a/sci-chemistry/vmd/vmd-1.9.2.ebuild b/sci-chemistry/vmd/vmd-1.9.2.ebuild index 4bc9360f009b..2cee984cdd47 100644 --- a/sci-chemistry/vmd/vmd-1.9.2.ebuild +++ b/sci-chemistry/vmd/vmd-1.9.2.ebuild @@ -1,4 +1,4 @@ -# Copyright 1999-2019 Gentoo Authors +# Copyright 1999-2020 Gentoo Authors # Distributed under the terms of the GNU General Public License v2 EAPI=5 @@ -27,7 +27,10 @@ CDEPEND=" >=dev-lang/tk-8.6.1 dev-lang/perl dev-libs/expat - dev-python/numpy[${PYTHON_USEDEP}] + || ( + dev-python/numpy-python2[${PYTHON_USEDEP}] + dev-python/numpy[${PYTHON_USEDEP}] + ) sci-libs/netcdf:0= virtual/opengl >=x11-libs/fltk-1.1.10-r2:1 diff --git a/sci-chemistry/vmd/vmd-1.9.3-r1.ebuild b/sci-chemistry/vmd/vmd-1.9.3-r1.ebuild index 3f24f85d6273..abf5d03202fc 100644 --- a/sci-chemistry/vmd/vmd-1.9.3-r1.ebuild +++ b/sci-chemistry/vmd/vmd-1.9.3-r1.ebuild @@ -1,4 +1,4 @@ -# Copyright 1999-2019 Gentoo Authors +# Copyright 1999-2020 Gentoo Authors # Distributed under the terms of the GNU General Public License v2 EAPI=7 @@ -27,7 +27,10 @@ CDEPEND=" >=dev-lang/tk-8.6.1:0= dev-lang/perl dev-libs/expat - dev-python/numpy[${PYTHON_USEDEP}] + || ( + dev-python/numpy-python2[${PYTHON_USEDEP}] + dev-python/numpy[${PYTHON_USEDEP}] + ) sci-libs/netcdf:0= virtual/opengl >=x11-libs/fltk-1.1.10-r2:1 diff --git a/sci-chemistry/vmd/vmd-1.9.3-r2.ebuild b/sci-chemistry/vmd/vmd-1.9.3-r2.ebuild index 02ad806afbeb..8d8897a57f8a 100644 --- a/sci-chemistry/vmd/vmd-1.9.3-r2.ebuild +++ b/sci-chemistry/vmd/vmd-1.9.3-r2.ebuild @@ -1,4 +1,4 @@ -# Copyright 1999-2019 Gentoo Authors +# Copyright 1999-2020 Gentoo Authors # Distributed under the terms of the GNU General Public License v2 EAPI=7 @@ -27,7 +27,10 @@ CDEPEND=" >=dev-lang/tk-8.6.1:0= dev-lang/perl dev-libs/expat - dev-python/numpy[${PYTHON_USEDEP}] + || ( + dev-python/numpy-python2[${PYTHON_USEDEP}] + dev-python/numpy[${PYTHON_USEDEP}] + ) sci-libs/netcdf:0= virtual/opengl >=x11-libs/fltk-1.1.10-r2:1 diff --git a/sci-chemistry/vmd/vmd-1.9.3.ebuild b/sci-chemistry/vmd/vmd-1.9.3.ebuild index c1480738aa46..01098a723def 100644 --- a/sci-chemistry/vmd/vmd-1.9.3.ebuild +++ b/sci-chemistry/vmd/vmd-1.9.3.ebuild @@ -1,4 +1,4 @@ -# Copyright 1999-2019 Gentoo Authors +# Copyright 1999-2020 Gentoo Authors # Distributed under the terms of the GNU General Public License v2 EAPI=5 @@ -27,7 +27,10 @@ CDEPEND=" >=dev-lang/tk-8.6.1 dev-lang/perl dev-libs/expat - dev-python/numpy[${PYTHON_USEDEP}] + || ( + dev-python/numpy-python2[${PYTHON_USEDEP}] + dev-python/numpy[${PYTHON_USEDEP}] + ) sci-libs/netcdf:0= virtual/opengl >=x11-libs/fltk-1.1.10-r2:1 |