gentoo auto-resync : 30:06:2024 - 08:00:50

3 files changed, 0 insertions, 281 deletions

diff --git a/sci-chemistry/Manifest.gz b/sci-chemistry/Manifest.gz
index 883ae2cbccdf..4e4ba7251c80 100644
--- a/sci-chemistry/Manifest.gz
+++ b/sci-chemistry/Manifest.gz
diff --git a/sci-chemistry/openbabel/Manifest b/sci-chemistry/openbabel/Manifest
index d8db74c07b20..f11612320ce8 100644
--- a/sci-chemistry/openbabel/Manifest
+++ b/sci-chemistry/openbabel/Manifest
@@ -4,6 +4,5 @@ DIST openbabel-3.1.1_p20210225.tar.gz 36674527 BLAKE2B bb82fc96f704249d211bd86c7
 DIST openbabel.jpg 12159 BLAKE2B b701df2b8c29df607dc2bd3997a282aa9a726d56c789ff2db900d33234dc691f76b6af12a4c9ccda4f09984504b863c40c39e8bf91058939996714ede2dd37c7 SHA512 998ea526c8c92f87dd203527fdd9f4e001357e951409209f41ab68e0b730fe12d97f9079c12ca289be413854ea2abcf8bb691ae5af823a6f29d6a590e1a3e2b0
 DIST openbabel.png 29060 BLAKE2B 8d217d92125cc73462437411dd4e0cc05179cb0934f5ed15a307acc6b549b8ebab250a48a05ef7657f48c6df394f37da9b659de61efb1477b79b573a5b393ad3 SHA512 bbcaaa37663b526c9038ccb9edaf05ccc3ad1a861739a737f05f363098d8402a10b36e341fcc0aca636e809c6c32db99bf987b41719a0c756bf5e31444d3eb70
 EBUILD openbabel-3.1.1_p20210225-r1.ebuild 7464 BLAKE2B 3c3b12086a4b69c1ccfd92b5da672ff2ec4a1dc161832094d62b049977e0cb8d8717e5999f3138f857efb642a123a64fca804c5a109f69de939686fae9a08bd8 SHA512 0b516f2a8cb7194d2146397c3fc1ef375446d8dd6a29d862ed73e78455e41c0d9a86cdaee7de64cd2d4403dac34b0ec8fee4e68156df7562331d4577c82f411c
-EBUILD openbabel-3.1.1_p20210225.ebuild 7424 BLAKE2B 6cb8b62d7aca60079f7dddf5917b5645dedb0a93ff4292d3f8e2f5a6d464e69becf2391ddda75f915e8d73c5133529e8553147219a375950a8707b48081a96e6 SHA512 f7eb0086a3a66327a5b126acf1886bf7cad7fcdb59b4f36a3ea29886280bc0684123edc17c8ad3c98bea6c16200d3a35d7562e15871cada9c4a67b5982405299
 EBUILD openbabel-9999.ebuild 7314 BLAKE2B 4bb03f325ec2876317c4f13d481b2f7738989358bd7707f27f6f650e3e41a9afe758721b4c4929a664eb09f82fbb8da0ba9dba8331f687c36758547345ce2ef0 SHA512 37b58ea4747b79b6dcfc5e5cd69af8f1d37b2a6a1c8bf414116396549094db9e89133b70a944ab3b7668eb9d815c7e4ae9fcff9a877cea85a00911e44682eb0a
 MISC metadata.xml 921 BLAKE2B c0797440e50f813777c4858cc1ce893546d7785e57243318ec7d2c601c6ec2ecb7ec5ab3dbacce960c8b71196eef51ddce07802257fff0d4cba0293f940a773f SHA512 8ee8a50230f374904a9ddaaf7337caf018788ab25a1839dbf5a48b0e5c49ac4e285a1fa759900fa6d993bc220d3586a923ae21158687be971fc51a6c302f12ad
diff --git a/sci-chemistry/openbabel/openbabel-3.1.1_p20210225.ebuild b/sci-chemistry/openbabel/openbabel-3.1.1_p20210225.ebuild
deleted file mode 100644
index d6a0165b20c5..000000000000
--- a/sci-chemistry/openbabel/openbabel-3.1.1_p20210225.ebuild
+++ /dev/null
@@ -1,280 +0,0 @@
-# Copyright 1999-2024 Gentoo Authors
-# Distributed under the terms of the GNU General Public License v2
-
-EAPI=8
-
-PYTHON_COMPAT=( python3_{9..11} )
-WX_GTK_VER=3.0-gtk3
-
-inherit cmake desktop flag-o-matic perl-functions python-r1 toolchain-funcs wxwidgets xdg-utils
-
-DESCRIPTION="Interconverts file formats used in molecular modeling"
-HOMEPAGE="https://openbabel.org/"
-
-if [[ "${PV}" == *9999* ]]; then
-	inherit git-r3
-	EGIT_REPO_URI="https://github.com/openbabel/${PN}.git"
-else
-	if [[ "${PV}" == *_p* ]]; then	# eg., openbabel-3.1.1_p20210325
-		# Set to commit hash
-		OPENBABEL_COMMIT=08e23f39b0cc39b4eebd937a5a2ffc1a7bac3e1b
-		SRC_URI="https://github.com/${PN}/${PN}/archive/${OPENBABEL_COMMIT}.tar.gz -> ${P}.tar.gz"
-		S="${WORKDIR}/${PN}-${OPENBABEL_COMMIT}"
-	else
-		MY_P="${PN}-$(ver_rs 1- -)"
-		SRC_URI="https://github.com/${PN}/${PN}/archive/${MY_P}.tar.gz -> ${P}.tar.gz"
-		S="${WORKDIR}/${PN}-${MY_P}"
-	fi
-	KEYWORDS="amd64 ~arm ~x86 ~amd64-linux ~x86-linux ~ppc-macos"
-fi
-
-SRC_URI="${SRC_URI}
-	https://openbabel.org/docs/dev/_static/babel130.png -> ${PN}.png
-	https://openbabel.org/OBTitle.jpg ->  ${PN}.jpg"
-
-# See src/CMakeLists.txt for LIBRARY_VERSION
-SLOT="0/7.0.0"
-LICENSE="GPL-2"
-IUSE="cpu_flags_arm_neon cpu_flags_x86_sse2 cpu_flags_x86_sse4_2 doc examples +inchi json minimal openmp perl png python test wxwidgets"
-
-RESTRICT="!test? ( test )"
-
-# Inaccurate dependency logic upstream
-REQUIRED_USE="
-	python? ( ${PYTHON_REQUIRED_USE} )
-	test? ( inchi json !minimal wxwidgets )
-"
-
-BDEPEND="
-	dev-lang/perl
-	doc? (
-		app-text/doxygen
-		dev-texlive/texlive-latex
-	)
-	perl? ( >=dev-lang/swig-2 )
-	python? ( >=dev-lang/swig-2 )
-	test? ( dev-lang/python )
-"
-
-COMMON_DEPEND="
-	dev-cpp/eigen:3
-	dev-libs/libxml2:2
-	sys-libs/zlib:=
-	inchi? ( sci-libs/inchi )
-	json? ( >=dev-libs/rapidjson-1.1.0 )
-	png? ( x11-libs/cairo )
-	python? ( ${PYTHON_DEPS} )
-	wxwidgets? ( x11-libs/wxGTK:${WX_GTK_VER}[X] )
-"
-
-DEPEND="
-	${COMMON_DEPEND}
-	perl? ( dev-lang/perl )
-"
-
-RDEPEND="
-	${COMMON_DEPEND}
-	perl? (
-		dev-lang/perl:=
-		!sci-chemistry/openbabel-perl
-	)
-"
-
-PATCHES=(
-	"${FILESDIR}"/openbabel-3.1.1-fix-time-check-cmake.patch
-)
-
-pkg_pretend() {
-	[[ ${MERGE_TYPE} != binary ]] && use openmp && tc-check-openmp
-}
-
-pkg_setup() {
-	[[ ${MERGE_TYPE} != binary ]] && use openmp && tc-check-openmp
-}
-
-prepare_python_bindings() {
-	mkdir -p scripts/${EPYTHON} || die
-	# Appends to scripts/CMakeLists.txt, substituting the correct tags, for
-	# each valid python implementation,
-	cat "${FILESDIR}"/${PN}-python.cmake | \
-		sed -e "s|@@EPYTHON@@|${EPYTHON}|" \
-			-e "s|@@PYTHON_INCUDE_DIR@@|$(python_get_includedir)|" \
-			-e "s|@@PYTHON_LIBS@@|$(python_get_LIBS)|" \
-			-e "s|@@PYTHON_SITEDIR@@|$(python_get_sitedir)|" >> \
-				scripts/CMakeLists.txt || die
-}
-
-src_prepare() {
-	cmake_src_prepare
-
-	if use perl; then
-		perl_set_version
-
-		sed -e "/\${LIB_INSTALL_DIR}\/auto/s|\${LIB_INSTALL_DIR}|${VENDOR_ARCH}|" \
-			-e "/\${LIB_INSTALL_DIR}\/Chemistry/s|\${LIB_INSTALL_DIR}|${VENDOR_ARCH}|" \
-			-i scripts/CMakeLists.txt || die
-	fi
-
-	if use python; then
-		# Skip the python bindings sections as we'll append our own
-		sed -e '/^if (PYTHON_BINDINGS)$/s|PYTHON_BINDINGS|false|' \
-			-i {scripts,test}/CMakeLists.txt || die
-		if use test; then
-			# Problems with testbindings built with -O2
-			local test_skip="@unittest.skip('Similar to Issue #2138')"
-			sed -e "/def testTemplates/s|^|    ${test_skip}\\n|" \
-				-i test/testbindings.py || die
-			test_skip="@unittest.skip('Similar to Issue #2246')"
-			sed -e "/^def test_write_string/s|^|${test_skip}\\n|" \
-				-i test/testobconv_writers.py || die
-			fi
-		python_foreach_impl prepare_python_bindings
-	fi
-
-	# Remove dependency automagic
-	if ! use png; then
-		sed -e '/^find_package(Cairo/d' -i CMakeLists.txt || die
-	fi
-	if ! use wxwidgets; then
-		sed -e '/^find_package(wxWidgets/d' -i CMakeLists.txt || die
-	fi
-	if ! use inchi; then
-		sed -e '/^else()$/s|else\(\)|elseif\(false\)|' \
-			-i cmake/modules/FindInchi.cmake || die
-	fi
-
-	# Don't install example bins to /usr/bin
-	if use examples; then
-		sed -e "/RUNTIME DESTINATION/s|bin|share/doc/${PF}/examples|" \
-			-i doc/examples/CMakeLists.txt || die
-	fi
-
-	# boost is only used if building with gcc-3.x, which isn't supported in
-	# Gentoo. Still, it shouldn't look for, and include, its headers
-	sed -e '/find_package(Boost/d' -i {{tools,src}/,}CMakeLists.txt || die
-}
-
-src_configure() {
-	if use json; then
-		# -DOPTIMIZE_NATIVE=ON also forces -march=native so use
-		# cpu_flags to set defines instead
-		use cpu_flags_x86_sse2 && append-cppflags -DRAPIDJSON_SSE2
-		use cpu_flags_x86_sse4_2 && append-cppflags -DRAPIDJSON_SSE42
-		use cpu_flags_arm_neon && append-cppflags -DRAPIDJSON_NEON
-	fi
-
-	use wxwidgets && setup-wxwidgets
-
-	use_bindings() {
-		(use perl || use python) && (echo 'yes' || die) || (echo 'no' || die)
-	}
-
-	local mycmakeargs=(
-		-DBUILD_DOCS=$(usex doc)
-		-DBUILD_EXAMPLES=$(usex examples)
-		-DBUILD_GUI=$(usex wxwidgets)
-		-DENABLE_OPENMP=$(usex openmp)
-		-DENABLE_TESTS=$(usex test)
-		-DMINIMAL_BUILD=$(usex minimal)
-		# Set this, otherwise it defaults to true and forces WITH_INCHI=true
-		-DOPENBABEL_USE_SYSTEM_INCHI=$(usex inchi)
-		-DOPTIMIZE_NATIVE=OFF
-		-DPERL_BINDINGS=$(usex perl)
-		-DPYTHON_BINDINGS=$(usex python)
-		-DRUN_SWIG=$(use_bindings)
-		-DWITH_COORDGEN=false
-		-DWITH_INCHI=$(usex inchi)
-		-DWITH_JSON=$(usex json)
-		-DWITH_MAEPARSER=false
-	)
-
-	if use test; then
-		# Help cmake find the python interpreter when dev-lang/python-exec is built
-		# without native-symlinks support.
-		python_setup
-		mycmakeargs+=( -DPYTHON_EXECUTABLE="${PYTHON}" )
-	fi
-
-	cmake_src_configure
-}
-
-src_test() {
-	# Wierd deadlock causes system_load to keep rising
-	cmake_src_test -j1
-}
-
-openbabel-optimize() {
-	python_optimize "${D}/$(python_get_sitedir)"/openbabel || die
-}
-
-src_install() {
-	cmake_src_install
-
-	docinto html
-	for x in doc/*.html; do
-		[[ ${x} != doc/api*.html ]] && dodoc ${x}
-	done
-	# Rendered in some html pages
-	newdoc "${DISTDIR}"/${PN}.png babel130.png
-	newdoc "${DISTDIR}"/${PN}.jpg OBTitle.jpg
-
-	if use doc; then
-		cmake_src_install docs
-		docinto html/API
-		dodoc -r doc/API/html/.
-	fi
-
-	if use examples; then
-		# no compression since we want ready-to-run scripts
-		docompress -x /usr/share/doc/${PF}/examples
-
-		# ${PV} doesn't correspond to the internal BABEL_VERSION for
-		# live or patch release builds so we grep it
-		local babel_ver=$(
-			grep '^#define BABEL_VERSION' < \
-				"${BUILD_DIR}"/include/openbabel/babelconfig.h | \
-				cut -d \" -f 2 || die
-		)
-		docinto examples/povray
-		dodoc doc/dioxin.* doc/README*.pov*
-		# Needed by the povray example
-		dosym ../../../../${PN}/${babel_ver}/babel_povray3.inc \
-			/usr/share/doc/${PF}/examples/povray/babel31.inc
-
-	fi
-
-	if use perl; then
-		docinto /
-		newdoc scripts/perl/Changes Changes.perl
-		newdoc scripts/perl/README README.perl
-		if use examples; then
-			docinto examples/perl
-			dodoc -r scripts/perl/examples/.
-		fi
-	fi
-
-	if use python; then
-		python_foreach_impl openbabel-optimize
-		docinto /
-		newdoc scripts/python/README.rst README.python.rst
-		docinto html
-		dodoc scripts/python/*.html
-		if use examples; then
-			docinto examples/python
-			dodoc -r scripts/python/examples/.
-		fi
-	fi
-
-	if use wxwidgets; then
-		make_desktop_entry obgui "Open Babel" ${PN}
-		doicon "${DISTDIR}"/${PN}.png
-	fi
-}
-
-pkg_postinst() {
-	use wxwidgets && xdg_desktop_database_update
-}
-
-pkg_postrm() {
-	use wxwidgets && xdg_desktop_database_update
-}