From d5ee59790ee8298b8599b0aa0fa21a98b972a44d Mon Sep 17 00:00:00 2001 From: V3n3RiX Date: Sun, 30 Jun 2024 08:00:51 +0100 Subject: gentoo auto-resync : 30:06:2024 - 08:00:50 --- sci-chemistry/Manifest.gz | Bin 9203 -> 9199 bytes sci-chemistry/openbabel/Manifest | 1 - .../openbabel/openbabel-3.1.1_p20210225.ebuild | 280 --------------------- 3 files changed, 281 deletions(-) delete mode 100644 sci-chemistry/openbabel/openbabel-3.1.1_p20210225.ebuild (limited to 'sci-chemistry') diff --git a/sci-chemistry/Manifest.gz b/sci-chemistry/Manifest.gz index 883ae2cbccdf..4e4ba7251c80 100644 Binary files a/sci-chemistry/Manifest.gz and b/sci-chemistry/Manifest.gz differ diff --git a/sci-chemistry/openbabel/Manifest b/sci-chemistry/openbabel/Manifest index d8db74c07b20..f11612320ce8 100644 --- a/sci-chemistry/openbabel/Manifest +++ b/sci-chemistry/openbabel/Manifest @@ -4,6 +4,5 @@ DIST openbabel-3.1.1_p20210225.tar.gz 36674527 BLAKE2B bb82fc96f704249d211bd86c7 DIST openbabel.jpg 12159 BLAKE2B b701df2b8c29df607dc2bd3997a282aa9a726d56c789ff2db900d33234dc691f76b6af12a4c9ccda4f09984504b863c40c39e8bf91058939996714ede2dd37c7 SHA512 998ea526c8c92f87dd203527fdd9f4e001357e951409209f41ab68e0b730fe12d97f9079c12ca289be413854ea2abcf8bb691ae5af823a6f29d6a590e1a3e2b0 DIST openbabel.png 29060 BLAKE2B 8d217d92125cc73462437411dd4e0cc05179cb0934f5ed15a307acc6b549b8ebab250a48a05ef7657f48c6df394f37da9b659de61efb1477b79b573a5b393ad3 SHA512 bbcaaa37663b526c9038ccb9edaf05ccc3ad1a861739a737f05f363098d8402a10b36e341fcc0aca636e809c6c32db99bf987b41719a0c756bf5e31444d3eb70 EBUILD openbabel-3.1.1_p20210225-r1.ebuild 7464 BLAKE2B 3c3b12086a4b69c1ccfd92b5da672ff2ec4a1dc161832094d62b049977e0cb8d8717e5999f3138f857efb642a123a64fca804c5a109f69de939686fae9a08bd8 SHA512 0b516f2a8cb7194d2146397c3fc1ef375446d8dd6a29d862ed73e78455e41c0d9a86cdaee7de64cd2d4403dac34b0ec8fee4e68156df7562331d4577c82f411c -EBUILD openbabel-3.1.1_p20210225.ebuild 7424 BLAKE2B 6cb8b62d7aca60079f7dddf5917b5645dedb0a93ff4292d3f8e2f5a6d464e69becf2391ddda75f915e8d73c5133529e8553147219a375950a8707b48081a96e6 SHA512 f7eb0086a3a66327a5b126acf1886bf7cad7fcdb59b4f36a3ea29886280bc0684123edc17c8ad3c98bea6c16200d3a35d7562e15871cada9c4a67b5982405299 EBUILD openbabel-9999.ebuild 7314 BLAKE2B 4bb03f325ec2876317c4f13d481b2f7738989358bd7707f27f6f650e3e41a9afe758721b4c4929a664eb09f82fbb8da0ba9dba8331f687c36758547345ce2ef0 SHA512 37b58ea4747b79b6dcfc5e5cd69af8f1d37b2a6a1c8bf414116396549094db9e89133b70a944ab3b7668eb9d815c7e4ae9fcff9a877cea85a00911e44682eb0a MISC metadata.xml 921 BLAKE2B c0797440e50f813777c4858cc1ce893546d7785e57243318ec7d2c601c6ec2ecb7ec5ab3dbacce960c8b71196eef51ddce07802257fff0d4cba0293f940a773f SHA512 8ee8a50230f374904a9ddaaf7337caf018788ab25a1839dbf5a48b0e5c49ac4e285a1fa759900fa6d993bc220d3586a923ae21158687be971fc51a6c302f12ad diff --git a/sci-chemistry/openbabel/openbabel-3.1.1_p20210225.ebuild b/sci-chemistry/openbabel/openbabel-3.1.1_p20210225.ebuild deleted file mode 100644 index d6a0165b20c5..000000000000 --- a/sci-chemistry/openbabel/openbabel-3.1.1_p20210225.ebuild +++ /dev/null @@ -1,280 +0,0 @@ -# Copyright 1999-2024 Gentoo Authors -# Distributed under the terms of the GNU General Public License v2 - -EAPI=8 - -PYTHON_COMPAT=( python3_{9..11} ) -WX_GTK_VER=3.0-gtk3 - -inherit cmake desktop flag-o-matic perl-functions python-r1 toolchain-funcs wxwidgets xdg-utils - -DESCRIPTION="Interconverts file formats used in molecular modeling" -HOMEPAGE="https://openbabel.org/" - -if [[ "${PV}" == *9999* ]]; then - inherit git-r3 - EGIT_REPO_URI="https://github.com/openbabel/${PN}.git" -else - if [[ "${PV}" == *_p* ]]; then # eg., openbabel-3.1.1_p20210325 - # Set to commit hash - OPENBABEL_COMMIT=08e23f39b0cc39b4eebd937a5a2ffc1a7bac3e1b - SRC_URI="https://github.com/${PN}/${PN}/archive/${OPENBABEL_COMMIT}.tar.gz -> ${P}.tar.gz" - S="${WORKDIR}/${PN}-${OPENBABEL_COMMIT}" - else - MY_P="${PN}-$(ver_rs 1- -)" - SRC_URI="https://github.com/${PN}/${PN}/archive/${MY_P}.tar.gz -> ${P}.tar.gz" - S="${WORKDIR}/${PN}-${MY_P}" - fi - KEYWORDS="amd64 ~arm ~x86 ~amd64-linux ~x86-linux ~ppc-macos" -fi - -SRC_URI="${SRC_URI} - https://openbabel.org/docs/dev/_static/babel130.png -> ${PN}.png - https://openbabel.org/OBTitle.jpg -> ${PN}.jpg" - -# See src/CMakeLists.txt for LIBRARY_VERSION -SLOT="0/7.0.0" -LICENSE="GPL-2" -IUSE="cpu_flags_arm_neon cpu_flags_x86_sse2 cpu_flags_x86_sse4_2 doc examples +inchi json minimal openmp perl png python test wxwidgets" - -RESTRICT="!test? ( test )" - -# Inaccurate dependency logic upstream -REQUIRED_USE=" - python? ( ${PYTHON_REQUIRED_USE} ) - test? ( inchi json !minimal wxwidgets ) -" - -BDEPEND=" - dev-lang/perl - doc? ( - app-text/doxygen - dev-texlive/texlive-latex - ) - perl? ( >=dev-lang/swig-2 ) - python? ( >=dev-lang/swig-2 ) - test? ( dev-lang/python ) -" - -COMMON_DEPEND=" - dev-cpp/eigen:3 - dev-libs/libxml2:2 - sys-libs/zlib:= - inchi? ( sci-libs/inchi ) - json? ( >=dev-libs/rapidjson-1.1.0 ) - png? ( x11-libs/cairo ) - python? ( ${PYTHON_DEPS} ) - wxwidgets? ( x11-libs/wxGTK:${WX_GTK_VER}[X] ) -" - -DEPEND=" - ${COMMON_DEPEND} - perl? ( dev-lang/perl ) -" - -RDEPEND=" - ${COMMON_DEPEND} - perl? ( - dev-lang/perl:= - !sci-chemistry/openbabel-perl - ) -" - -PATCHES=( - "${FILESDIR}"/openbabel-3.1.1-fix-time-check-cmake.patch -) - -pkg_pretend() { - [[ ${MERGE_TYPE} != binary ]] && use openmp && tc-check-openmp -} - -pkg_setup() { - [[ ${MERGE_TYPE} != binary ]] && use openmp && tc-check-openmp -} - -prepare_python_bindings() { - mkdir -p scripts/${EPYTHON} || die - # Appends to scripts/CMakeLists.txt, substituting the correct tags, for - # each valid python implementation, - cat "${FILESDIR}"/${PN}-python.cmake | \ - sed -e "s|@@EPYTHON@@|${EPYTHON}|" \ - -e "s|@@PYTHON_INCUDE_DIR@@|$(python_get_includedir)|" \ - -e "s|@@PYTHON_LIBS@@|$(python_get_LIBS)|" \ - -e "s|@@PYTHON_SITEDIR@@|$(python_get_sitedir)|" >> \ - scripts/CMakeLists.txt || die -} - -src_prepare() { - cmake_src_prepare - - if use perl; then - perl_set_version - - sed -e "/\${LIB_INSTALL_DIR}\/auto/s|\${LIB_INSTALL_DIR}|${VENDOR_ARCH}|" \ - -e "/\${LIB_INSTALL_DIR}\/Chemistry/s|\${LIB_INSTALL_DIR}|${VENDOR_ARCH}|" \ - -i scripts/CMakeLists.txt || die - fi - - if use python; then - # Skip the python bindings sections as we'll append our own - sed -e '/^if (PYTHON_BINDINGS)$/s|PYTHON_BINDINGS|false|' \ - -i {scripts,test}/CMakeLists.txt || die - if use test; then - # Problems with testbindings built with -O2 - local test_skip="@unittest.skip('Similar to Issue #2138')" - sed -e "/def testTemplates/s|^| ${test_skip}\\n|" \ - -i test/testbindings.py || die - test_skip="@unittest.skip('Similar to Issue #2246')" - sed -e "/^def test_write_string/s|^|${test_skip}\\n|" \ - -i test/testobconv_writers.py || die - fi - python_foreach_impl prepare_python_bindings - fi - - # Remove dependency automagic - if ! use png; then - sed -e '/^find_package(Cairo/d' -i CMakeLists.txt || die - fi - if ! use wxwidgets; then - sed -e '/^find_package(wxWidgets/d' -i CMakeLists.txt || die - fi - if ! use inchi; then - sed -e '/^else()$/s|else\(\)|elseif\(false\)|' \ - -i cmake/modules/FindInchi.cmake || die - fi - - # Don't install example bins to /usr/bin - if use examples; then - sed -e "/RUNTIME DESTINATION/s|bin|share/doc/${PF}/examples|" \ - -i doc/examples/CMakeLists.txt || die - fi - - # boost is only used if building with gcc-3.x, which isn't supported in - # Gentoo. Still, it shouldn't look for, and include, its headers - sed -e '/find_package(Boost/d' -i {{tools,src}/,}CMakeLists.txt || die -} - -src_configure() { - if use json; then - # -DOPTIMIZE_NATIVE=ON also forces -march=native so use - # cpu_flags to set defines instead - use cpu_flags_x86_sse2 && append-cppflags -DRAPIDJSON_SSE2 - use cpu_flags_x86_sse4_2 && append-cppflags -DRAPIDJSON_SSE42 - use cpu_flags_arm_neon && append-cppflags -DRAPIDJSON_NEON - fi - - use wxwidgets && setup-wxwidgets - - use_bindings() { - (use perl || use python) && (echo 'yes' || die) || (echo 'no' || die) - } - - local mycmakeargs=( - -DBUILD_DOCS=$(usex doc) - -DBUILD_EXAMPLES=$(usex examples) - -DBUILD_GUI=$(usex wxwidgets) - -DENABLE_OPENMP=$(usex openmp) - -DENABLE_TESTS=$(usex test) - -DMINIMAL_BUILD=$(usex minimal) - # Set this, otherwise it defaults to true and forces WITH_INCHI=true - -DOPENBABEL_USE_SYSTEM_INCHI=$(usex inchi) - -DOPTIMIZE_NATIVE=OFF - -DPERL_BINDINGS=$(usex perl) - -DPYTHON_BINDINGS=$(usex python) - -DRUN_SWIG=$(use_bindings) - -DWITH_COORDGEN=false - -DWITH_INCHI=$(usex inchi) - -DWITH_JSON=$(usex json) - -DWITH_MAEPARSER=false - ) - - if use test; then - # Help cmake find the python interpreter when dev-lang/python-exec is built - # without native-symlinks support. - python_setup - mycmakeargs+=( -DPYTHON_EXECUTABLE="${PYTHON}" ) - fi - - cmake_src_configure -} - -src_test() { - # Wierd deadlock causes system_load to keep rising - cmake_src_test -j1 -} - -openbabel-optimize() { - python_optimize "${D}/$(python_get_sitedir)"/openbabel || die -} - -src_install() { - cmake_src_install - - docinto html - for x in doc/*.html; do - [[ ${x} != doc/api*.html ]] && dodoc ${x} - done - # Rendered in some html pages - newdoc "${DISTDIR}"/${PN}.png babel130.png - newdoc "${DISTDIR}"/${PN}.jpg OBTitle.jpg - - if use doc; then - cmake_src_install docs - docinto html/API - dodoc -r doc/API/html/. - fi - - if use examples; then - # no compression since we want ready-to-run scripts - docompress -x /usr/share/doc/${PF}/examples - - # ${PV} doesn't correspond to the internal BABEL_VERSION for - # live or patch release builds so we grep it - local babel_ver=$( - grep '^#define BABEL_VERSION' < \ - "${BUILD_DIR}"/include/openbabel/babelconfig.h | \ - cut -d \" -f 2 || die - ) - docinto examples/povray - dodoc doc/dioxin.* doc/README*.pov* - # Needed by the povray example - dosym ../../../../${PN}/${babel_ver}/babel_povray3.inc \ - /usr/share/doc/${PF}/examples/povray/babel31.inc - - fi - - if use perl; then - docinto / - newdoc scripts/perl/Changes Changes.perl - newdoc scripts/perl/README README.perl - if use examples; then - docinto examples/perl - dodoc -r scripts/perl/examples/. - fi - fi - - if use python; then - python_foreach_impl openbabel-optimize - docinto / - newdoc scripts/python/README.rst README.python.rst - docinto html - dodoc scripts/python/*.html - if use examples; then - docinto examples/python - dodoc -r scripts/python/examples/. - fi - fi - - if use wxwidgets; then - make_desktop_entry obgui "Open Babel" ${PN} - doicon "${DISTDIR}"/${PN}.png - fi -} - -pkg_postinst() { - use wxwidgets && xdg_desktop_database_update -} - -pkg_postrm() { - use wxwidgets && xdg_desktop_database_update -} -- cgit v1.2.3