reinit the tree, so we can have metadata

4 files changed, 216 insertions, 0 deletions

diff --git a/sci-chemistry/xyza2pipe/Manifest b/sci-chemistry/xyza2pipe/Manifest
new file mode 100644
index 000000000000..55327cbbc958
--- /dev/null
+++ b/sci-chemistry/xyza2pipe/Manifest
@@ -0,0 +1,6 @@
+AUX xyza2pipe-20121001-gentoo.patch 3974 SHA256 3886b6e12fc799eac67e2405ab298328a9f91c6eee868e8fe0ad8b2302024133 SHA512 7b8be1fd799d65e9a600766afb21e95a4722eff8a657f88d0adaf5aaf11ed369f6d8a27f3e003337570837abc45cfa9e758d1219af275773f79b81d1c1c322c4 WHIRLPOOL f59c5cb20c4546e96ce4a0fe88109306f99fd8f9f8218f50d592afa05327d5e3b74e910d00785e9070dd6af131b20799248112883edbee708203a7e7620334ad
+DIST xyza2pipe-20121001.tgz 61002 SHA256 c2e2d83dc6f0424afe519aa0ba83922f1c6d1b90933edf5d62722ac56af3b1de SHA512 b64abf46a8d7f3530eecaeec3bc8b143600c6823174a22727868087c2f7f17af0b538a0521e3a29806dc608b003948a1e31296ab395bc3c0089c5dc7a391d855 WHIRLPOOL fec47032811c81709d996712b938ed315e67435d72ae91c1ce2a01546c62eae4868d7e430585cd4f1830e158a8a994e23af02e6f23a897d44f98a81b2889baac
+EBUILD xyza2pipe-20121001.ebuild 686 SHA256 dacf176f29a0807ca83d774d2fca0f9d74edd4231ac7bb58004c96d3956b87f4 SHA512 407fcfd20d9bc7c4ed85b6a8838996ec014d5c631f355be88d67f3cd42376617716286f43ecb01d1acba866f49d232ddf8c1d7e3b44975b1d552baaaa9fc9fe2 WHIRLPOOL 6ac54e032185056b89d1f75b6aad4aeaa6d95d5f981d2957f0a7f6a9dc940a5d8f6b66ffa230bcfab5994ea3c61a0b5e4efcdf98244a7458302ec3e830c14dcd
+MISC ChangeLog 2718 SHA256 20b3a8c4b767761b81ad6dca4f74f10cecdf8ad3c038654ca9507eca00c95916 SHA512 3bd7ad3f7844f74e1ec60fed1a5606e69fe77275bce43eccbcb7b4c5fdec5a54be47358538ede704c0cf778d6f55b4c23b0100f910580eb223cf2f580a007cb8 WHIRLPOOL 0effcc713b1f9661f84b1a9834db9627377525a8d392737d570ac5e33f4df61384ef07c1d7a44c384ac0f96c9309bd4ddf6bfa40e0a10623b796fc4debe0452c
+MISC ChangeLog-2015 572 SHA256 19e878f0ec6aac0ffb6d8cbc33f5cbde29622ffba731bccf003a7c3834fefb3b SHA512 1c5e958721108b493d6b772e7d3af99e24467e2e62c6f42e61535b6e270e88085f78535af78d662a1d48689aa1c2fbafb76d7a4fd67871402ee14e05a01080d3 WHIRLPOOL f6fb2a77aa3ef702d9d5c1d9383240f8686c630c087ceda83cfad049d08ada6a3b995153b10cd6b2edb56a24f570078c6764311cb122adbd9456cb67b9241432
+MISC metadata.xml 271 SHA256 70036ea85140f86ed670bc2791c9de861c4b6164755ee36a2560d1c812ec13f6 SHA512 3e6e6047a29e07123b81279cae1de17bc4bd4c3d7d8a8d26560114a18185f473d038fc220fa81c7213fa203ce197bad8b1c272d9b7e41cd770a953fa6308ff92 WHIRLPOOL 1ccb964819c99258af550a41c6712ba8ebdecbec1c821106de2f22c37b1c981cd4f324856a8014b08bd186bcd2a7fa45a7e772cc15705d1a39016b5229e77269
diff --git a/sci-chemistry/xyza2pipe/files/xyza2pipe-20121001-gentoo.patch b/sci-chemistry/xyza2pipe/files/xyza2pipe-20121001-gentoo.patch
new file mode 100644
index 000000000000..ec4220dd0695
--- /dev/null
+++ b/sci-chemistry/xyza2pipe/files/xyza2pipe-20121001-gentoo.patch
@@ -0,0 +1,168 @@
+ Makefile | 106 +++++++++++++++++++++++++++++++++++++--------------------------
+ 1 file changed, 63 insertions(+), 43 deletions(-)
+
+diff --git a/Makefile b/Makefile
+index 15d4bd3..e738ec2 100644
+--- a/Makefile
++++ b/Makefile
+@@ -4,7 +4,7 @@
+ #  Last modified: Feb/22/2012
+ #
+ 
+-CFLAGS		= -O3
++CFLAGS		?= -O3
+ MFLAGS		= -lm
+ 
+ TARGETS		= xyza2pipe ucsf2pipe nv2pipe xeasy2pipe azara2pipe vnmr2pipe xwnmr2pipe\
+@@ -62,89 +62,109 @@ clean:
+ 	rm -f $(TARGETS) addxyza2pipe
+ 
+ $(OBJECTS_MATH):
+-	$(CC) $*.c -c -o $@ $(CFLAGS) -D__XYZA2PIPE__
++	$(CC) $(CPPFLAGS) -D__XYZA2PIPE__ $(CFLAGS) $*.c -c -o $@
+ 
+ .o:
+-	$(CC) $< -c -o $@ $(CFLAGS)
++	$(CC) $(CPPFLAGS) $(CFLAGS) $< -c -o $@
+ 
+ xyza2pipe: $(OBJECTS_C) $(OBJECTS_XP)
+-	$(CC) $@.c $^ -o $@ \
+-	$(CFLAGS) $(MFLAGS)
++	$(CC) $(CFLAGS) $(LDFLAGS) $(CFLAGS) $(LDFLAGS) $@.c $^ -o $@ \
++	$(MFLAGS)
++	mv -v $@ bin/
+ 
+ pipe2xyza: $(OBJECTS_C) $(OBJECTS_PX)
+-	$(CC) $@.c $^ -o $@ \
+-	$(CFLAGS) $(MFLAGS)
++	$(CC) $(CFLAGS) $(LDFLAGS) $@.c $^ -o $@ \
++	$(MFLAGS)
++	mv -v $@ bin/
+ 
+ ucsf2pipe: $(OBJECTS_C) $(OBJECTS_UP)
+-	$(CC) $@.c $^ -o $@ \
+-	$(CFLAGS) $(MFLAGS)
++	$(CC) $(CFLAGS) $(LDFLAGS) $@.c $^ -o $@ \
++	$(MFLAGS)
++	mv -v $@ bin/
+ 
+ pipe2ucsf: $(OBJECTS_C) $(OBJECTS_PU)
+-	$(CC) $@.c $^ -o $@ \
+-	$(CFLAGS) $(MFLAGS)
++	$(CC) $(CFLAGS) $(LDFLAGS) $@.c $^ -o $@ \
++	$(MFLAGS)
++	mv -v $@ bin/
+ 
+ nv2pipe: $(OBJECTS_C) $(OBJECTS_NP)
+-	$(CC) $@.c $^ -o $@ \
+-	$(CFLAGS) $(MFLAGS)
++	$(CC) $(CFLAGS) $(LDFLAGS) $@.c $^ -o $@ \
++	$(MFLAGS)
++	mv -v $@ bin/
+ 
+ pipe2nv: $(OBJECTS_C) $(OBJECTS_PN)
+-	$(CC) $@.c $^ -o $@ \
+-	$(CFLAGS) $(MFLAGS)
++	$(CC) $(CFLAGS) $(LDFLAGS) $@.c $^ -o $@ \
++	$(MFLAGS)
++	mv -v $@ bin/
+ 
+ xeasy2pipe: $(OBJECTS_C) $(OBJECTS_EP)
+-	$(CC) $@.c $^ -o $@ \
+-	$(CFLAGS) $(MFLAGS)
++	$(CC) $(CFLAGS) $(LDFLAGS) $@.c $^ -o $@ \
++	$(MFLAGS)
++	mv -v $@ bin/
+ 
+ pipe2xeasy: $(OBJECTS_C) $(OBJECTS_PE)
+-	$(CC) $@.c $^ -o $@ \
+-	$(CFLAGS) $(MFLAGS)
++	$(CC) $(CFLAGS) $(LDFLAGS) $@.c $^ -o $@ \
++	$(MFLAGS)
++	mv -v $@ bin/
+ 
+ azara2pipe: $(OBJECTS_C) $(OBJECTS_AP)
+-	$(CC) $@.c $^ -o $@ \
+-	$(CFLAGS) $(MFLAGS)
++	$(CC) $(CFLAGS) $(LDFLAGS) $@.c $^ -o $@ \
++	$(MFLAGS)
++	mv -v $@ bin/
+ 
+ pipe2azara: $(OBJECTS_C) $(OBJECTS_PA)
+-	$(CC) $@.c $^ -o $@ \
+-	$(CFLAGS) $(MFLAGS)
++	$(CC) $(CFLAGS) $(LDFLAGS) $@.c $^ -o $@ \
++	$(MFLAGS)
++	mv -v $@ bin/
+ 
+ vnmr2pipe: $(OBJECTS_C) $(OBJECTS_VP)
+-	$(CC) $@.c $^ -o $@ \
+-	$(CFLAGS) $(MFLAGS)
++	$(CC) $(CFLAGS) $(LDFLAGS) $@.c $^ -o $@ \
++	$(MFLAGS)
++	mv -v $@ bin/
+ 
+ xwnmr2pipe: $(OBJECTS_C) $(OBJECTS_BP)
+-	$(CC) $@.c $^ -o $@ \
+-	$(CFLAGS) $(MFLAGS)
++	$(CC) $(CFLAGS) $(LDFLAGS) $@.c $^ -o $@ \
++	$(MFLAGS)
++	mv -v $@ bin/
+ 
+ pipe2proj: $(OBJECTS_C) $(OBJECTS_PJ)
+-	$(CC) $@.c $^ -o $@ \
+-	$(CFLAGS) $(MFLAGS)
++	$(CC) $(CFLAGS) $(LDFLAGS) $@.c $^ -o $@ \
++	$(MFLAGS)
++	mv -v $@ bin/
+ 
+ add2pipe: $(OBJECTS_C) $(OBJECTS_DXP)
+-	$(CC) $@.c $^ -o $@ \
+-	$(CFLAGS) $(MFLAGS)
++	$(CC) $(CFLAGS) $(LDFLAGS) $@.c $^ -o $@ \
++	$(MFLAGS)
++	mv -v $@ bin/
+ 	rm -f addxyza2pipe
+ 	ln -s add2pipe addxyza2pipe
+ 
+ adducsf2pipe: $(OBJECTS_C) $(OBJECTS_DUP)
+-	$(CC) $@.c $^ -o $@ \
+-	$(CFLAGS) $(MFLAGS)
++	$(CC) $(CFLAGS) $(LDFLAGS) $@.c $^ -o $@ \
++	$(MFLAGS)
++	mv -v $@ bin/
+ 
+ addnv2pipe: $(OBJECTS_C) $(OBJECTS_DNP)
+-	$(CC) $@.c $^ -o $@ \
+-	$(CFLAGS) $(MFLAGS)
++	$(CC) $(CFLAGS) $(LDFLAGS) $@.c $^ -o $@ \
++	$(MFLAGS)
++	mv -v $@ bin/
+ 
+ addxeasy2pipe: $(OBJECTS_C) $(OBJECTS_DEP)
+-	$(CC) $@.c $^ -o $@ \
+-	$(CFLAGS) $(MFLAGS)
++	$(CC) $(CFLAGS) $(LDFLAGS) $@.c $^ -o $@ \
++	$(MFLAGS)
++	mv -v $@ bin/
+ 
+ addazara2pipe: $(OBJECTS_C) $(OBJECTS_DAP)
+-	$(CC) $@.c $^ -o $@ \
+-	$(CFLAGS) $(MFLAGS)
++	$(CC) $(CFLAGS) $(LDFLAGS) $@.c $^ -o $@ \
++	$(MFLAGS)
++	mv -v $@ bin/
+ 
+ addvnmr2pipe: $(OBJECTS_C) $(OBJECTS_DVP)
+-	$(CC) $@.c $^ -o $@ \
+-	$(CFLAGS) $(MFLAGS)
++	$(CC) $(CFLAGS) $(LDFLAGS) $@.c $^ -o $@ \
++	$(MFLAGS)
++	mv -v $@ bin/
+ 
+ addxwnmr2pipe: $(OBJECTS_C) $(OBJECTS_DBP)
+-	$(CC) $@.c $^ -o $@ \
+-	$(CFLAGS) $(MFLAGS)
++	$(CC) $(CFLAGS) $(LDFLAGS) $@.c $^ -o $@ \
++	$(MFLAGS)
++	mv -v $@ bin/
diff --git a/sci-chemistry/xyza2pipe/metadata.xml b/sci-chemistry/xyza2pipe/metadata.xml
new file mode 100644
index 000000000000..8937bad0b175
--- /dev/null
+++ b/sci-chemistry/xyza2pipe/metadata.xml
@@ -0,0 +1,8 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
+<pkgmetadata>
+  <maintainer type="project">
+    <email>sci-chemistry@gentoo.org</email>
+    <name>Gentoo Chemistry Project</name>
+  </maintainer>
+</pkgmetadata>
diff --git a/sci-chemistry/xyza2pipe/xyza2pipe-20121001.ebuild b/sci-chemistry/xyza2pipe/xyza2pipe-20121001.ebuild
new file mode 100644
index 000000000000..033619474de5
--- /dev/null
+++ b/sci-chemistry/xyza2pipe/xyza2pipe-20121001.ebuild
@@ -0,0 +1,34 @@
+# Copyright 1999-2017 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+
+EAPI=6
+
+inherit toolchain-funcs
+
+DESCRIPTION="Cross conversion environment of NMR spectra"
+HOMEPAGE="http://fermi.pharm.hokudai.ac.jp/olivia/api/index.php/Xyza2pipe_src"
+SRC_URI="http://fermi.pharm.hokudai.ac.jp/olivia/documents/xyza2pipe.tgz -> ${P}.tgz"
+
+SLOT="0"
+KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux"
+LICENSE="olivia"
+IUSE=""
+
+S="${WORKDIR}"/${PN}
+
+PATCHES=( "${FILESDIR}"/${P}-gentoo.patch )
+
+src_prepare() {
+	default
+	tc-export CC
+	mkdir bin || die
+}
+
+src_install() {
+	local i
+	dodoc README FEEDBACK
+	cd bin || die
+	for i in *; do
+		newbin ${i}{,-olivia}
+	done
+}