diff options
author | V3n3RiX <venerix@redcorelinux.org> | 2017-10-09 18:53:29 +0100 |
---|---|---|
committer | V3n3RiX <venerix@redcorelinux.org> | 2017-10-09 18:53:29 +0100 |
commit | 4f2d7949f03e1c198bc888f2d05f421d35c57e21 (patch) | |
tree | ba5f07bf3f9d22d82e54a462313f5d244036c768 /sci-chemistry/threeV/files/threeV-1.2-format-security.patch |
reinit the tree, so we can have metadata
Diffstat (limited to 'sci-chemistry/threeV/files/threeV-1.2-format-security.patch')
-rw-r--r-- | sci-chemistry/threeV/files/threeV-1.2-format-security.patch | 198 |
1 files changed, 198 insertions, 0 deletions
diff --git a/sci-chemistry/threeV/files/threeV-1.2-format-security.patch b/sci-chemistry/threeV/files/threeV-1.2-format-security.patch new file mode 100644 index 000000000000..b693559900ad --- /dev/null +++ b/sci-chemistry/threeV/files/threeV-1.2-format-security.patch @@ -0,0 +1,198 @@ + cavities.cpp | 8 ++++---- + channel.cpp | 10 +++++----- + fsv_calc.cpp | 8 ++++---- + solvent.cpp | 8 ++++---- + tunnel.cpp | 8 ++++---- + vdw.cpp | 8 ++++---- + volume.cpp | 8 ++++---- + 7 files changed, 29 insertions(+), 29 deletions(-) + +diff --git a/cavities.cpp b/cavities.cpp +index 418a1a7..96b6a15 100644 +--- a/cavities.cpp ++++ b/cavities.cpp +@@ -35,7 +35,7 @@ int main(int argc, char *argv[]) { + + while(argc > 1 && argv[1][0] == '-') { + if(argv[1][1] == 'i') { +- sprintf(file,&argv[2][0]); ++ sprintf(file,"%s",&argv[2][0]); + } else if(argv[1][1] == 'g') { + GRID = atof(&argv[2][0]); + } else if(argv[1][1] == 's') { +@@ -45,11 +45,11 @@ int main(int argc, char *argv[]) { + } else if(argv[1][1] == 't') { + trim_rad = atof(&argv[2][0]); + } else if(argv[1][1] == 'e') { +- sprintf(ezdfile,&argv[2][0]); ++ sprintf(ezdfile,"%s",&argv[2][0]); + } else if(argv[1][1] == 'm') { +- sprintf(mrcfile,&argv[2][0]); ++ sprintf(mrcfile,"%s",&argv[2][0]); + } else if(argv[1][1] == 'o') { +- sprintf(pdbfile,&argv[2][0]); ++ sprintf(pdbfile,"%s",&argv[2][0]); + } else if(argv[1][1] == 'h') { + cerr << "./Cavities.exe -i <file> -g <grid spacing> -s <shell radius> " << endl + << "\t-p <probe radius> -t <trim_probe_rad> " << endl +diff --git a/channel.cpp b/channel.cpp +index c5acd20..9040631 100644 +--- a/channel.cpp ++++ b/channel.cpp +@@ -35,7 +35,7 @@ int main(int argc, char *argv[]) { + + while(argc > 1 && argv[1][0] == '-') { + if(argv[1][1] == 'i') { +- sprintf(file,&argv[2][0]); ++ sprintf(file,"%s",&argv[2][0]); + } else if(argv[1][1] == 'b') { + BIGPROBE = atof(&argv[2][0]); + } else if(argv[1][1] == 's') { +@@ -49,13 +49,13 @@ int main(int argc, char *argv[]) { + } else if(argv[1][1] == 'z') { + z = atof(&argv[2][0]); + } else if(argv[1][1] == 'i') { +- sprintf(file,&argv[2][0]); ++ sprintf(file,"%s",&argv[2][0]); + } else if(argv[1][1] == 'o') { +- sprintf(pdbfile,&argv[2][0]); ++ sprintf(pdbfile,"%s",&argv[2][0]); + } else if(argv[1][1] == 'e') { +- sprintf(ezdfile,&argv[2][0]); ++ sprintf(ezdfile,"%s",&argv[2][0]); + } else if(argv[1][1] == 'm') { +- sprintf(mrcfile,&argv[2][0]); ++ sprintf(mrcfile,"%s",&argv[2][0]); + } else if(argv[1][1] == 'g') { + GRID = atof(&argv[2][0]); + } else if(argv[1][1] == 'h') { +diff --git a/fsv_calc.cpp b/fsv_calc.cpp +index 9f81347..ef765b8 100644 +--- a/fsv_calc.cpp ++++ b/fsv_calc.cpp +@@ -34,7 +34,7 @@ int main(int argc, char *argv[]) { + + while(argc > 1 && argv[1][0] == '-') { + if(argv[1][1] == 'i') { +- sprintf(file,&argv[2][0]); ++ sprintf(file,"%s",&argv[2][0]); + } else if(argv[1][1] == 's') { + SMPROBE = atof(&argv[2][0]); + } else if(argv[1][1] == 'b') { +@@ -44,11 +44,11 @@ int main(int argc, char *argv[]) { + } else if(argv[1][1] == 'g') { + GRID = atof(&argv[2][0]); + } else if(argv[1][1] == 'o') { +- sprintf(pdbfile,&argv[2][0]); ++ sprintf(pdbfile,"%s",&argv[2][0]); + } else if(argv[1][1] == 'e') { +- sprintf(ezdfile,&argv[2][0]); ++ sprintf(ezdfile,"%s",&argv[2][0]); + } else if(argv[1][1] == 'm') { +- sprintf(mrcfile,&argv[2][0]); ++ sprintf(mrcfile,"%s",&argv[2][0]); + } else if(argv[1][1] == 'h') { + cerr << "./FsvCalc.exe -i <file> -b <big_probe> -s <small_probe> " << endl + << "\t-t <trim probe> -g <gridspace> " << endl +diff --git a/solvent.cpp b/solvent.cpp +index d857696..bc9d67f 100644 +--- a/solvent.cpp ++++ b/solvent.cpp +@@ -34,7 +34,7 @@ int main(int argc, char *argv[]) { + + while(argc > 1 && argv[1][0] == '-') { + if(argv[1][1] == 'i') { +- sprintf(file,&argv[2][0]); ++ sprintf(file,"%s",&argv[2][0]); + } else if(argv[1][1] == 's') { + SMPROBE = atof(&argv[2][0]); + } else if(argv[1][1] == 'b') { +@@ -42,11 +42,11 @@ int main(int argc, char *argv[]) { + } else if(argv[1][1] == 't') { + TRIMPROBE = atof(&argv[2][0]); + } else if(argv[1][1] == 'e') { +- sprintf(ezdfile,&argv[2][0]); ++ sprintf(ezdfile,"%s",&argv[2][0]); + } else if(argv[1][1] == 'm') { +- sprintf(mrcfile,&argv[2][0]); ++ sprintf(mrcfile,"%s",&argv[2][0]); + } else if(argv[1][1] == 'o') { +- sprintf(pdbfile,&argv[2][0]); ++ sprintf(pdbfile,"%s",&argv[2][0]); + } else if(argv[1][1] == 'g') { + GRID = atof(&argv[2][0]); + } else if(argv[1][1] == 'h') { +diff --git a/tunnel.cpp b/tunnel.cpp +index 0094d05..7472aaa 100644 +--- a/tunnel.cpp ++++ b/tunnel.cpp +@@ -40,7 +40,7 @@ int main(int argc, char *argv[]) { + + while(argc > 1 && argv[1][0] == '-') { + if(argv[1][1] == 'i') { +- sprintf(file,&argv[2][0]); ++ sprintf(file,"%s",&argv[2][0]); + } else if(argv[1][1] == 'g') { + GRID = atof(&argv[2][0]); + } else if(argv[1][1] == 's') { +@@ -50,11 +50,11 @@ int main(int argc, char *argv[]) { + } else if(argv[1][1] == 't') { + trim_prb = atof(&argv[2][0]); + } else if(argv[1][1] == 'e') { +- sprintf(ezdfile,&argv[2][0]); ++ sprintf(ezdfile,"%s",&argv[2][0]); + } else if(argv[1][1] == 'm') { +- sprintf(mrcfile,&argv[2][0]); ++ sprintf(mrcfile,"%s",&argv[2][0]); + } else if(argv[1][1] == 'o') { +- sprintf(pdbfile,&argv[2][0]); ++ sprintf(pdbfile,"%s",&argv[2][0]); + } else if(argv[1][1] == 'h') { + cerr << "./Tunnel.exe -i <file> -g <grid spacing> -p <tunnel probe radius>" << endl + << "\t-e <EZD outfile> -o <PDB outfile> -m <MRC outfile>" << endl +diff --git a/vdw.cpp b/vdw.cpp +index 4df73f5..0e26edc 100644 +--- a/vdw.cpp ++++ b/vdw.cpp +@@ -32,13 +32,13 @@ int main(int argc, char *argv[]) { + + while(argc > 1 && argv[1][0] == '-') { + if(argv[1][1] == 'i') { +- sprintf(file,&argv[2][0]); ++ sprintf(file,"%s",&argv[2][0]); + } else if(argv[1][1] == 'o') { +- sprintf(pdbfile,&argv[2][0]); ++ sprintf(pdbfile,"%s",&argv[2][0]); + } else if(argv[1][1] == 'e') { +- sprintf(ezdfile,&argv[2][0]); ++ sprintf(ezdfile,"%s",&argv[2][0]); + } else if(argv[1][1] == 'm') { +- sprintf(mrcfile,&argv[2][0]); ++ sprintf(mrcfile,"%s",&argv[2][0]); + } else if(argv[1][1] == 'g') { + GRID = atof(&argv[2][0]); + } else if(argv[1][1] == 'h') { +diff --git a/volume.cpp b/volume.cpp +index a2ca9ad..c304b94 100644 +--- a/volume.cpp ++++ b/volume.cpp +@@ -32,15 +32,15 @@ int main(int argc, char *argv[]) { + + while(argc > 1 && argv[1][0] == '-') { + if(argv[1][1] == 'i') { +- sprintf(file,&argv[2][0]); ++ sprintf(file,"%s",&argv[2][0]); + } else if(argv[1][1] == 'p') { + PROBE = atof(&argv[2][0]); + } else if(argv[1][1] == 'o') { +- sprintf(pdbfile,&argv[2][0]); ++ sprintf(pdbfile,"%s",&argv[2][0]); + } else if(argv[1][1] == 'e') { +- sprintf(ezdfile,&argv[2][0]); ++ sprintf(ezdfile,"%s",&argv[2][0]); + } else if(argv[1][1] == 'm') { +- sprintf(mrcfile,&argv[2][0]); ++ sprintf(mrcfile,"%s",&argv[2][0]); + } else if(argv[1][1] == 'g') { + GRID = atof(&argv[2][0]); + } else if(argv[1][1] == 'h') { |