gentoo resync : 23.09.2020

4 files changed, 235 insertions, 23 deletions

diff --git a/sci-chemistry/surf/Manifest b/sci-chemistry/surf/Manifest
index 5a66f3575403..701e9493a5d0 100644
--- a/sci-chemistry/surf/Manifest
+++ b/sci-chemistry/surf/Manifest
@@ -1,3 +1,5 @@
+AUX surf-1.0-Wreturn-type.patch 3022 BLAKE2B b97dea56225fd9018a39ef9db9d385fdc1ff143b7b595e15143ce3f38d195409ace81211d7e6b77eaab0165b3675a7c9cce02b29a0052bfcf15cbd82d2e8c3ef SHA512 17bab124975525ad0959bfa05e22926fc4849dc2e19bf7262b2ad79e857434641dc378a6cc57edbcfda1772efe138ea860424ad6e31b45495ad1f75579f5921f
+AUX surf-1.0-makefile.patch 4592 BLAKE2B b402f39c180ae2a7f11f32c21dd7d5c3ef6c46204283e0f2bb76c2d260ec4f65b77ba3a351cabae850705b40a5a52fdfee8a58ea8d280ac7b6762eb7ae70f157 SHA512 618e2a8b98d004fb4730387dc1b064feab504abffc1066c17b79022f4033749bcd7173255029fe3aad2c480d3a91294d225615d6d44e79949beca1a66c9aee23
 DIST surf-1.0.tar.Z 74347 BLAKE2B 543696838470f8b263d3841e177bb9054eb24a1ff0978fa09d9617e32a3a3e6b0662b37c1faa83fa449321276c8b3dd4aed80e978ea3c8315ed5b11f37196a73 SHA512 55b0e771f880931e43d677498ef4cdd92e5f57980d90b686b13c7ae612c8d695353a6f3b5ad0dab184d44e67d8cc5244e7b3f45b4f067c4174ed4399c184d435
-EBUILD surf-1.0.ebuild 796 BLAKE2B 3e66904e8e7fd63a6577a64c011ced32e73031807a7470c9895c172743759133e7423404a4107c5f99d127124d2bb14457ff882627ace6e524257200b67bcef2 SHA512 774ac12030accc1959b6eb22bd52ddd32b3a4b53ade020a5e36d58d160c0b5c3beed3c49eb8ae13b02d68dc95a21675063eb4b9c4262f804bf60a700c0d0b31b
+EBUILD surf-1.0.ebuild 597 BLAKE2B 2a7c1ca764d287a8cae7b488aa6c093f9bf39d9f0f5eeb95e40bf266ecbfb2a6626e26b5ec35b703e24444db0ae9e34b9543e860e84cdffc3903c59f0a4333ce SHA512 000baae1d0e630b52382ef2a122dd0653f4bfb39d9811fabda931c9721e2c5ff448771b914e3d2aca88323d7c72e87085ee1df46edf85274590e9665e67b8a6c
 MISC metadata.xml 261 BLAKE2B 509ce9958149f9cd522a2c68dd0d23ed851d19d02494611456592897093378d180a6006cddf1575fd60106119e72726255c49db2e10fde1b370bdf2f3cf8c94a SHA512 72682d17ec2b918131b551bd1ff41004965d3cf0c00d24222b34741d2eabf601cf36d4266be70ba7fb7bd0ab55d9dcb5b8e4ca41125bc31f176516797459c8c7
diff --git a/sci-chemistry/surf/files/surf-1.0-Wreturn-type.patch b/sci-chemistry/surf/files/surf-1.0-Wreturn-type.patch
new file mode 100644
index 000000000000..9ad6cf31593d
--- /dev/null
+++ b/sci-chemistry/surf/files/surf-1.0-Wreturn-type.patch
@@ -0,0 +1,108 @@
+--- a/compute.c
++++ b/compute.c
+@@ -210,7 +210,7 @@
+ 
+   Current_atom = atom_id;
+ 
+-  if (!compute_neighbors(atom_id, &num_constraints)) return;
++  if (!compute_neighbors(atom_id, &num_constraints)) return -1;
+ 
+   compute_planes(atom_id, num_constraints,constraints);
+ 
+@@ -597,7 +597,7 @@
+   */
+   if (all_verts_in_sphere(rvertices, rvertices_count, sq_radius)) 
+   { /* printf("atom_id %d all_in = TRUE \n", atom_id); */
+-    return;
++    return -1;
+   }
+ 
+   for(i = 0; i < rfaces_count; i++)	       /* for each face    */
+@@ -647,7 +647,7 @@
+   if (DOTPROD3(diff, diff) < 1e-10)
+   /* atom center lies in the feasible region, and so can be also
+      taken to be the tes_origin - no more computations required */
+-    return;
++    return -1;
+ 
+   /* try computing the tes_origin as the average of all int_pts */
+   VEC3_ZERO(temp_origin); count = 0;
+--- a/tessel_concave.c
++++ b/tessel_concave.c
+@@ -178,7 +178,7 @@
+   if ((sq_side_len[0] < EPS) && 
+       (sq_side_len[1] < EPS) && 
+       (sq_side_len[2] < EPS)) 
+-  { return;
++  { return -1;
+   }
+ 
+   /* evaluate which side of the plane the points lie wrt the probe center */
+@@ -195,14 +195,14 @@
+   max_len = FMAX((FMAX(sq_side_len[0], sq_side_len[1])), sq_side_len[2]);
+   max_side = (max_len==sq_side_len[0])?0:((max_len==sq_side_len[1])? 1 : 2);
+ 
+-  if (num_fine_points == 0) return;      /* all points are on the wrong side */
++  if (num_fine_points == 0) return -1;      /* all points are on the wrong side */
+ 
+   if (max_len <= Max_Tess_Len_Sq)
+   { /* sufficiently small so display but first check to see whether it
+        intersects the plane or not and if so, clip it accordingly */
+     if (num_fine_points == 3)
+     { gen_tris(points[0], points[1], points[2]);
+-      return;
++      return -1;
+     }
+     else if (num_fine_points == 1) /* two points are on the wrong side */
+       i = (itemp[0] == 1)? 0 : ((itemp[1] == 1)? 1: 2);
+@@ -305,7 +305,7 @@
+       (sq_side_len[1] < EPS) && 
+       (sq_side_len[2] < EPS)) 
+   { 
+-    return;
++    return -1;
+   }
+ 
+   if (max_len > Max_Tess_Len_Sq)
+--- a/tessel_convex.c
++++ b/tessel_convex.c
+@@ -74,7 +74,7 @@
+      atoms[atom_id].center[Y], atoms[atom_id].center[Z], atoms[atom_id].radius);
+     fflush(stderr);
+     free(sph_side);
+-    return;
++    return -1;
+   }
+ 
+   
+--- a/tessel_torus.c
++++ b/tessel_torus.c
+@@ -191,7 +191,7 @@
+ 
+   if (j > n)
+   { printf("gen_torus(): Too many torus verts %d (limit %d)\n",j, n);
+-    return ;
++    return -1;
+   }
+   old_j = j;
+ 
+@@ -202,7 +202,7 @@
+     gen_linear_recurse(tor_pts[0][i],tor_pts[1][i],r[k],&j,fcenter,fradius,0);
+     if (j > n)
+     { printf("gen_torus(): Too many torus verts %d (limit %d)\n",j, n);
+-      return ;
++      return -1;
+     }
+ 
+     for(m = 0; m < j-1; m++)
+--- a/utils.c
++++ b/utils.c
+@@ -91,7 +91,7 @@
+   disc = radius*radius - DOTPROD3(EO, EO);
+   if (FP_EQ_EPS(disc, 0, GP_EPS*GP_EPS))
+   { VEC3_ASN_OP(int_point, =, ray_pt);
+-    return;
++    return -1;
+   }
+ 
+   one_by_sq_dir_mag = 1.0/DOTPROD3(ray_dir, ray_dir);
diff --git a/sci-chemistry/surf/files/surf-1.0-makefile.patch b/sci-chemistry/surf/files/surf-1.0-makefile.patch
new file mode 100644
index 000000000000..ae5177ffb501
--- /dev/null
+++ b/sci-chemistry/surf/files/surf-1.0-makefile.patch
@@ -0,0 +1,112 @@
+--- a/Makefile
++++ b/Makefile
+@@ -1,24 +1,19 @@
+ # Compilation flags
+ #CC	    = cc
+-CC	    = cc
+-INCLUDE     = -I. 
++CPPFLAGS += -I.
+ #LINCLUDE    = -lcurses -ltermcap -lm
+-LINCLUDE    = -lm
+-OPT_CFLAGS  = -O2 $(FLAGS) $(INCLUDE)
+-#CFLAGS	    = -g $(FLAGS) $(INCLUDE)
+-CFLAGS	    = -O2 $(FLAGS) $(INCLUDE)
++LDLIBS      = -lm
+ 
+ # These are the user object files in the application
+ SRCS        = surf.c io.c compute.c dual.c utils.c lp.c chull.c tessel_cases.c \
+ 	      tessel_patches.c tessel_convex.c tessel_concave.c tessel_torus.c 
+ 
+ # obj files for sequential execution
+-OBJS        = surf.o io.o compute.o dual.o utils.o lp.o chull.o tessel_cases.o \
++OBJS        = io.o compute.o dual.o utils.o lp.o chull.o tessel_cases.o \
+ 	      tessel_patches.o tessel_convex.o tessel_concave.o tessel_torus.o  
+ 
+ # make objects
+-surf: $(OBJS) Makefile 
+-	$(CC) $(CFLAGS) $(OBJS) -o surf $(LINCLUDE)
++surf: $(OBJS)
+ 
+ lint:
+ 	lint $(INCLUDE) $(SRCS)
+@@ -29,80 +24,3 @@
+ release:
+ 	tar -cvf surf.tar README *.[hc] Makefile
+ 	compress surf.tar
+-
+-.c.o: 
+-	$(CC) $(CFLAGS) -c $*.c
+-
+-
+-# make depend makes the proper include file dependencies.  You _could_ run
+-# it on a sun4, but there's a bug in the SunOS version of sed that causes
+-# the all-important "cat makedep | sed -e 's/\.o/.d4o/p'" etc. line to
+-# not print the results to the stdout (but to keep pumping it through the
+-# edits.  The 'p' flag effectively does nothing). To avoid this I have
+-# replaced the 'p' flag by the 'w file' flag in sed.
+-
+-DEPEND = $(SRCS)
+-
+-depend: $(DEPEND)
+-	@ echo making dependencies...
+-	@ echo ' ' > makedep
+-	@ makedepend $(INCLUDE) -f makedep $(DEPEND)
+-	@ echo '/^# DO NOT DELETE THIS LINE/+2,$$d' >eddep
+-	@ echo '$$r makedep' >>eddep
+-	@ echo 'w' >>eddep
+-	@ cp Makefile Makefile.bak
+-	@ ed - Makefile < eddep
+-	@ rm eddep makedep 
+-	@ echo '  ' >> Makefile
+-	@ echo '# DEPENDENCIES MUST END AT END OF FILE' >> Makefile
+-	@ echo '# IF YOU PUT STUFF HERE IT WILL GO AWAY' >> Makefile
+-	@ echo '# see make depend above' >> Makefile
+-	@ echo 'done.'
+-	@ echo '  ' >> Makefile
+-
+-# DO NOT DELETE THIS LINE -- make depend depends on it.
+-  
+- 
+-# DO NOT DELETE THIS LINE -- make depend depends on it.
+-
+-surf.o: surf.h /usr/include/stdio.h /usr/include/math.h /usr/include/stdlib.h
+-surf.o: /usr/include/sgidefs.h /usr/include/string.h /usr/include/sys/time.h
+-surf.o: linalg.h
+-io.o: surf.h /usr/include/stdio.h /usr/include/math.h /usr/include/stdlib.h
+-io.o: /usr/include/sgidefs.h /usr/include/string.h /usr/include/sys/time.h
+-io.o: linalg.h
+-compute.o: surf.h /usr/include/stdio.h /usr/include/math.h
+-compute.o: /usr/include/stdlib.h /usr/include/sgidefs.h /usr/include/string.h
+-compute.o: /usr/include/sys/time.h linalg.h chull.h dual.h
+-dual.o: surf.h /usr/include/stdio.h /usr/include/math.h /usr/include/stdlib.h
+-dual.o: /usr/include/sgidefs.h /usr/include/string.h /usr/include/sys/time.h
+-dual.o: linalg.h dual.h chull.h
+-utils.o: surf.h /usr/include/stdio.h /usr/include/math.h
+-utils.o: /usr/include/stdlib.h /usr/include/sgidefs.h /usr/include/string.h
+-utils.o: /usr/include/sys/time.h linalg.h
+-lp.o: surf.h /usr/include/stdio.h /usr/include/math.h /usr/include/stdlib.h
+-lp.o: /usr/include/sgidefs.h /usr/include/string.h /usr/include/sys/time.h
+-lp.o: linalg.h
+-chull.o: surf.h /usr/include/stdio.h /usr/include/math.h
+-chull.o: /usr/include/stdlib.h /usr/include/sgidefs.h /usr/include/string.h
+-chull.o: /usr/include/sys/time.h linalg.h chull.h
+-tessel_cases.o: surf.h /usr/include/stdio.h /usr/include/math.h
+-tessel_cases.o: /usr/include/stdlib.h /usr/include/sgidefs.h
+-tessel_cases.o: /usr/include/string.h /usr/include/sys/time.h linalg.h dual.h
+-tessel_patches.o: surf.h /usr/include/stdio.h /usr/include/math.h
+-tessel_patches.o: /usr/include/stdlib.h /usr/include/sgidefs.h
+-tessel_patches.o: /usr/include/string.h /usr/include/sys/time.h linalg.h
+-tessel_convex.o: surf.h /usr/include/stdio.h /usr/include/math.h
+-tessel_convex.o: /usr/include/stdlib.h /usr/include/sgidefs.h
+-tessel_convex.o: /usr/include/string.h /usr/include/sys/time.h linalg.h
+-tessel_concave.o: surf.h /usr/include/stdio.h /usr/include/math.h
+-tessel_concave.o: /usr/include/stdlib.h /usr/include/sgidefs.h
+-tessel_concave.o: /usr/include/string.h /usr/include/sys/time.h linalg.h
+-tessel_torus.o: surf.h /usr/include/stdio.h /usr/include/math.h
+-tessel_torus.o: /usr/include/stdlib.h /usr/include/sgidefs.h
+-tessel_torus.o: /usr/include/string.h /usr/include/sys/time.h linalg.h
+-  
+-# DEPENDENCIES MUST END AT END OF FILE
+-# IF YOU PUT STUFF HERE IT WILL GO AWAY
+-# see make depend above
+-  
diff --git a/sci-chemistry/surf/surf-1.0.ebuild b/sci-chemistry/surf/surf-1.0.ebuild
index 5b6ff83975fd..16adc336a34d 100644
--- a/sci-chemistry/surf/surf-1.0.ebuild
+++ b/sci-chemistry/surf/surf-1.0.ebuild
@@ -1,7 +1,7 @@
-# Copyright 1999-2017 Gentoo Foundation
+# Copyright 1999-2020 Gentoo Authors
 # Distributed under the terms of the GNU General Public License v2
 
-EAPI="4"
+EAPI=7
 
 inherit toolchain-funcs
 
@@ -12,31 +12,21 @@ SRC_URI="http://www.ks.uiuc.edu/Research/vmd/extsrcs/surf.tar.Z -> ${P}.tar.Z"
 LICENSE="SURF"
 SLOT="0"
 KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux ~x86-macos"
-IUSE=""
 
-DEPEND="
-	!www-client/surf
-	sys-apps/ed
-	x11-misc/makedepend"
-RDEPEND=""
+RDEPEND="!www-client/surf"
 
-S=${WORKDIR}
+S="${WORKDIR}"
 
-src_prepare() {
-	sed \
-		-e 's:$(CC) $(CFLAGS) $(OBJS):$(CC) $(CFLAGS) $(LDFLAGS) $(OBJS):g' \
-		-i Makefile || die
-}
+PATCHES=(
+	"${FILESDIR}"/${P}-makefile.patch
+	"${FILESDIR}"/${P}-Wreturn-type.patch
+)
 
-src_compile() {
-	emake depend \
-		&& emake \
-			CC="$(tc-getCC)" \
-			OPT_CFLAGS="${CFLAGS} \$(INCLUDE)" \
-			CFLAGS="${CFLAGS} \$(INCLUDE)"
+src_configure() {
+	tc-export CC
 }
 
 src_install() {
-	dobin ${PN}
-	dodoc README
+	dobin surf
+	einstalldocs
 }