reinit the tree, so we can have metadata

3 files changed, 63 insertions, 0 deletions

diff --git a/sci-chemistry/suitename/Manifest b/sci-chemistry/suitename/Manifest
new file mode 100644
index 000000000000..c7cde63b8319
--- /dev/null
+++ b/sci-chemistry/suitename/Manifest
@@ -0,0 +1,5 @@
+DIST suitename.0.3.070628.src.tgz 29914 SHA256 5c2a709aa2d815b259475344aa2b982c157868eb9a7e5d6407b8f525f7e28c4c SHA512 27811e2511da760c3c35d0a44aa798a35610a0e80a72d8aa58b78cb780156508f96e1890f558b1aa43bc3469d433352b29e53dca79f3a876ae2b7073f8e73088 WHIRLPOOL f4d84180df12062ebfe402231276808bd28280c44c83559330071225aaa8f29c70cd7edf24c7657bdc53d6359df6dc61b7a601f01cb5e164eca3b017d386c6ec
+EBUILD suitename-0.3.070628.ebuild 760 SHA256 a1f12feff7ff7c7ebb917ea21b856df816f28ba28c0f797eb5aaff98c2667cf4 SHA512 59764e2a91931807a5a0f3f18de7b21064f6bb31311350d921a59d2d602b5433fc849ff16117504ababefc70ca007b302a67fb68f80ea38d01cd695fdf48cd4c WHIRLPOOL d313ff5518d51eafe443dcd936ca19c1d6934fdf061b6a15efd777cb40627053c6157dc62c43a3df483e214ae21f102f4d870253218f49cbc59e8c90299d7a84
+MISC ChangeLog 2588 SHA256 87357a9964e9bd5d610f025969e30094aafd92be7faf707bf23d00ed691480a1 SHA512 f5895f54c9aa599e1a4fcd033daf38f216abfab251aa765ffd73c33eedf2261268cd177d3f052c23eba25bcafdc3ab67f5538c6132a66d8c2f0d14cb83334075 WHIRLPOOL b3e60a9b813b480cef2ca501419b443454a98d18ae76b02aa68ac03ce9813989b0694188f5002a79e5992e34ee35fcf49bcdabbfacef061bddcc0b653512bd0c
+MISC ChangeLog-2015 590 SHA256 5f56515891621af4b9dc205d63d2a437cfc9300cff98878987b77319c7a1ad96 SHA512 3013e606c72fcc3d8ab509b4a7d6fed23bb39eabd341e070812333a9062e31630c000dd028be4c8e5cdc5edda2e19c482236644e6e83527b39008c547a8ae91f WHIRLPOOL 9a6ac47068b28aec29643a192717aad45c94208822bc6d483119ff7a12f6de4fb0d68864ce9bf5eeeb0adeb94dcbe0abdbf4e42f2757ac44de20e54503cc5e3e
+MISC metadata.xml 1118 SHA256 3d02c415cd222447e1b17c54fef4be2dc5b1ac727c4ccb795955e6e50183d9f6 SHA512 7b2b6baa9bbc3e4ff3e2b2c0ba15dce0af04b06133c96872bbbb3626566a025d1b7d5472fc159e879e7be0cf50b5c27ebbcbd8def5cb182fc3654b893d88f2f2 WHIRLPOOL a5faa66f566ce3eada72ec1264d9ae21c56e0d599152b089d4a4ec27c6c0b82d101b7e53f6a1aee3accdd94d6e6585a578a3f66e516221885248bce3f460b740
diff --git a/sci-chemistry/suitename/metadata.xml b/sci-chemistry/suitename/metadata.xml
new file mode 100644
index 000000000000..e816416cfd5d
--- /dev/null
+++ b/sci-chemistry/suitename/metadata.xml
@@ -0,0 +1,22 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
+<pkgmetadata>
+	<maintainer type="project">
+		<email>sci-chemistry@gentoo.org</email>
+		<name>Gentoo Chemistry Project</name>
+	</maintainer>
+	<longdescription>
+Suitename is a new C program that supports the ROC RNA Ontology Consortium 
+consensus RNA backbone nomenclature and conformer-list development (see our RNA 
+backbone rotamer section.
+From dihedral-angle input for a specific RNA structure (usually from Dangle), 
+Suitename categorizes the RNA backbone geometry of each suite (the 
+sugar-to-sugar version of a residue) either as an outlier ("!!") or as belonging
+to one of the 53 defined conformer bins. The output is either a 
+one-line-per-suite report, or a linear conformer string (as shown below the 
+image here) in one of several variant formats. Suitename is built into 
+MolProbity, producing entries in the multi-criterion chart for an RNA model and 
+also a suitestring file. The Suitename code is made available here for bulk or 
+individual command-line use.
+</longdescription>
+</pkgmetadata>
diff --git a/sci-chemistry/suitename/suitename-0.3.070628.ebuild b/sci-chemistry/suitename/suitename-0.3.070628.ebuild
new file mode 100644
index 000000000000..e0306fac8f29
--- /dev/null
+++ b/sci-chemistry/suitename/suitename-0.3.070628.ebuild
@@ -0,0 +1,36 @@
+# Copyright 1999-2012 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+
+EAPI=4
+
+inherit toolchain-funcs
+
+MY_P="${PN}.${PV}"
+
+DESCRIPTION="The ROC RNA Ontology Consortium consensus RNA backbone nomenclature and conformer-list development"
+HOMEPAGE="http://kinemage.biochem.duke.edu/software/suitename.php"
+SRC_URI="http://kinemage.biochem.duke.edu/downloads/software/${PN}/${MY_P}.src.tgz"
+
+SLOT="0"
+KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux"
+LICENSE="richardson"
+IUSE=""
+
+S="${WORKDIR}"/${MY_P}
+
+src_prepare() {
+	tc-export CC
+	cp Makefile.linux Makefile || die
+	sed \
+		-e 's:cc:${CC}:g' \
+		-e "s:-o:${LDFLAGS} -o:g" \
+		-i Makefile || die
+}
+
+src_compile() {
+	emake CFLAGS="${CFLAGS}"
+}
+
+src_install() {
+	dobin ${PN}
+}