reinit the tree, so we can have metadata

6 files changed, 309 insertions, 0 deletions

diff --git a/sci-chemistry/raster3d/Manifest b/sci-chemistry/raster3d/Manifest
new file mode 100644
index 000000000000..e3a841c1f33f
--- /dev/null
+++ b/sci-chemistry/raster3d/Manifest
@@ -0,0 +1,9 @@
+AUX 3.0.2-as-needed.patch 1579 SHA256 9348541ca30f28466690e53e3fc94efdcbb4f9dec4cb25d5e959ea1c2c4722f4 SHA512 2898b55dca4e8d8d353922c36f44a9bb1dece19fa4c1de3f13ea5a09202004c10fbab6c2df2a39b71a65de3f30c19cd2724703b22b7ef978f366c69894761ce9 WHIRLPOOL e0205f149fd224e0164b51ea81b0c25700bbf915e77cca20510a76035c32a48301f4ac2552983b8608bff407b9997c77994ecf628a1df178329fa13ba73f0c69
+AUX 3.0.2-gentoo-prefix.patch 738 SHA256 4d7f94ad57280254177cfecec0f0a6f5610f1d3b4c7c4b7439ab68262e285515 SHA512 5cb22fdff116c6a84a9f570af99062c08463d391cb0460d06e64990eaab2c945e86f0b3f5a378144c49014c0c41dc70cafb102c5feba500c43c8555ce41612a0 WHIRLPOOL 32c239f5704ad67e87ca24313e15d70d1b5a395637f64191deb597787596ae47172373c78b5310ce1bb08aad5384c466a713f0738676e50deb1f0140a1165613
+DIST Raster3D_3.0-2.tar 1743034 SHA256 a89bdfda61fae8d189820941f1b5685b40743b817128f57bc1225f983a47d984 SHA512 f8f73cc91eae521839a9db8ee1a7a9d8727ed510cb574116d89e918480700d844691a6fc3c4a28cb54312b0133cc610422e55d99716803cf3e8bb5d9d934e37f WHIRLPOOL 58fc31cc438538715b1f0ea17a28b44294d78db32e40fa16f8ab5a5781e26198227c534f06b8d25072e6c6101a4c9255fa906b9fee57b128d0e767bc0e04db83
+DIST Raster3D_3.0-3.tar 1729356 SHA256 1e7d02cf17f2d14855b8d241269948b37ed4d3ae6395914b66ff9f95c3a7fecf SHA512 bd372c4ba8d40db38e19f520883ca71ab7c5ef7a451b67150894e229b45167dfe00b77c19e118afc6abdb9ac07800cc16de5d2dc82c3ef9baa751200490e40fa WHIRLPOOL ad7c11cfd42543845420dcffbc87024c60b3058a51663076ace63b2e2fc0fec81a342f7b4e54f535e03de14fb9e76eace65259cdd2e83a6e0e83810ac8280c10
+EBUILD raster3d-3.0.2.ebuild 2465 SHA256 660b7fcd0ffec71b3ae85a89624e67a8894df802149ac9864baa7c229ca861b8 SHA512 4e8a30469d18f14da0b8258622adaa17c8ac6ff06229dfa59efdf1ec4ba5386c23a594317d059a53d21160d229c17b2fb0db8b8cfc02c36d257230ec641ba9db WHIRLPOOL 0c4af280676e8f020a78313373fb8b7a9ec0ce10d22167c8e20dcd9384fbce4c692dc8e0a4d09b2db1ade579ee9e4e1486bb4c8eea4122e71b1c0235ec711773
+EBUILD raster3d-3.0.3.ebuild 2468 SHA256 bfee09542d343481da0f70a09281408af0fd1cc59eed0b8a16755640cf9180e7 SHA512 3cb278b220520dec632ed9c15c33df8774e4c99b327cd0e895307f9b61c427a8da31d321e27df04985b780957470b739d5202d4d8544c8864ebaeaa50dd0df38 WHIRLPOOL 10167f2c5dcaeebfe38c346b7a9ff5deb2f3233490e0e747384b4cba47214533bac0270879adb4e2b25d19abaaa80b14f5efa97092ccff6d21ed8b416853a70b
+MISC ChangeLog 2625 SHA256 c63500406a45299d211690fedfb6a20193d6b195d72dde2d361d7067f93a1c3f SHA512 f87516d6a6fad91d6af0eab2b10c603a349298a45f1a7f96981fbe35e8674a58bc2733a06f98bfdd7518c8ccb85339fcbc7ff1e0224824137b7615bbb5af0439 WHIRLPOOL 870b5dc25e5911a568d9566421d7e8985808aaaac323bc90525c0e38798e3f13b6f054c234b78cc07ea985d55a0edd8386cae5651f543ff6280cc2c3582e9266
+MISC ChangeLog-2015 5814 SHA256 5b0aeacb31004d6b68ec8011ee2c27fd2253b24f6fd84930fbeeb795f6ce873b SHA512 6ab7c5d962850530fe8dda285150811a186b79993fcf400fd34fb2fb7fc9f0ff5c3d72ed99825f1b38fdf4ac2de627c8ff9672eee43ef6374277e7bc94c1926b WHIRLPOOL 7b92093a1660ba87306253e5c2bf499a5bc71e80b86376491ecb6252e6faf417a2e758d626c9427dd118bd878775ad02ed2f21f59f14d7704cb5f8c5e205ffd7
+MISC metadata.xml 459 SHA256 93bb5dee2c50eafdebc0d48e755eaedaeb86ca16d72e757fa1b79f9fecc4e66c SHA512 fe5bb2f873ea63f4c7185601842757cb0f791cecd8651fb4e15ea4992898ae60508e4a4c7bc161bddcfa3cf4125577da029b04cf06c900d6269af3f5b63bd916 WHIRLPOOL ae59b378f1fd7399922b683977d8669c1660ad6fed887c5088b69f3dc75863a6d6ab587d76d6187622b95e05dbdf38451f6ef1871df252496676b19c4c0bc4b9
diff --git a/sci-chemistry/raster3d/files/3.0.2-as-needed.patch b/sci-chemistry/raster3d/files/3.0.2-as-needed.patch
new file mode 100644
index 000000000000..9e0961952535
--- /dev/null
+++ b/sci-chemistry/raster3d/files/3.0.2-as-needed.patch
@@ -0,0 +1,50 @@
+diff --git a/Makefile b/Makefile
+index 1a1c549..4d74dd0 100644
+--- a/Makefile
++++ b/Makefile
+@@ -58,7 +58,7 @@ linux:
+ 	@echo OSDEFS =  -DLINUX -DNETWORKBYTEORDER       >> Makefile.incl
+ 	@echo include Makefile.package        >> Makefile.incl
+ 	@echo                                 >> Makefile.incl
+-	@echo qinp.o: qinp.f                  >> Makefile.incl
++	@echo qinp.o: qinp.f normal3d.o render.o >> Makefile.incl
+ 	@echo "	\$$(FC) -g -O0 -Wall -Wtabs -c -o qinp.o qinp.f" >> Makefile.incl
+ 	@echo                                 >> Makefile.incl
+ 
+@@ -214,20 +214,20 @@ ribbon:	ribbon.f ribbon1.f modsubs.f
+ 	ribbon.f ribbon1.f modsubs.f -o ribbon
+ 
+ rastep:	rastep.f quadric.o suv.o
+-	$(FC) $(FFLAGS) \
+-	rastep.f quadric.o suv.o $(LDFLAGS) \
++	$(FC) $(FFLAGS) $(LDFLAGS) \
++	rastep.f quadric.o suv.o \
+ 	-o rastep 
+ 
+ render:	render.o local.o quadric.o parse.o r3dtogd.o ungz.o qinp.o
+-	$(FC) $(FFLAGS) \
++	$(FC) $(FFLAGS) $(LDFLAGS) \
+ 	render.o local.o quadric.o parse.o r3dtogd.o ungz.o \
+ 	qinp.o \
+-	$(LIBS) $(LDFLAGS) \
+-	-o render
++	-o render \
++	$(LIBS)
+ 
+ normal3d:	normal3d.o quadric.o qinp.o ungz.o parameters.incl
+-	$(FC) $(FFLAGS) \
+-	normal3d.o quadric.o ungz.o qinp.o $(LDFLAGS) \
++	$(FC) $(FFLAGS) $(LDFLAGS) \
++	normal3d.o quadric.o ungz.o qinp.o \
+ 	-o normal3d
+ 
+ stereo3d:
+@@ -264,7 +264,7 @@ example1.png: render_small
+ 	./render_small
+ 
+ render_small: render_small.o local.o quadric.o parse_small.o r3dtogd.o ungz.o qinp_small.o
+-	$(FC) $(FFLAGS) $^ $(LIBS) $(LDFLAGS) -o $@
++	$(FC) $(FFLAGS) $(LDFLAGS) -o $@ $^ $(LIBS)
+ 
+ .SUFFIXES: .incl
+ SMALL=10
diff --git a/sci-chemistry/raster3d/files/3.0.2-gentoo-prefix.patch b/sci-chemistry/raster3d/files/3.0.2-gentoo-prefix.patch
new file mode 100644
index 000000000000..19b6cac3a6fe
--- /dev/null
+++ b/sci-chemistry/raster3d/files/3.0.2-gentoo-prefix.patch
@@ -0,0 +1,24 @@
+diff --git a/Makefile.template b/Makefile.template
+index 59de553..0ed283d 100644
+--- a/Makefile.template
++++ b/Makefile.template
+@@ -8,15 +8,15 @@ include VERSION
+ #
+ # Where to install the program, data files, and manuals
+ #
+-prefix  = /usr/local
++prefix  = @GENTOO_PORTAGE_EPREFIX@/usr/
+ bindir  = $(prefix)/bin
+ datadir = $(prefix)/share/Raster3D/materials
+ mandir  = $(prefix)/man/manl
+-htmldir = $(prefix)/share/Raster3D/html
++htmldir = $(prefix)/share/doc/MYPF/html
+ examdir = $(prefix)/share/Raster3D/examples
+ 
+-INCDIRS  =	-I/usr/include -I/usr/local/include
+-LIBDIRS  =	-L/usr/local/lib
++INCDIRS  =	-I@GENTOO_PORTAGE_EPREFIX@/usr/include
++LIBDIRS  =	-L@GENTOO_PORTAGE_EPREFIX@/usr/MYLIB
+ 
+ #
+ # TIFF support (enabled by default)
diff --git a/sci-chemistry/raster3d/metadata.xml b/sci-chemistry/raster3d/metadata.xml
new file mode 100644
index 000000000000..59d8b8360b0f
--- /dev/null
+++ b/sci-chemistry/raster3d/metadata.xml
@@ -0,0 +1,14 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
+<pkgmetadata>
+  <maintainer type="project">
+    <email>sci-chemistry@gentoo.org</email>
+    <name>Gentoo Chemistry Project</name>
+  </maintainer>
+  <upstream>
+    <changelog>http://skuld.bmsc.washington.edu/raster3d/CHANGELOG</changelog>
+  </upstream>
+  <use>
+    <flag name="gd">libgd support for PNG and JPEG output</flag>
+  </use>
+</pkgmetadata>
diff --git a/sci-chemistry/raster3d/raster3d-3.0.2.ebuild b/sci-chemistry/raster3d/raster3d-3.0.2.ebuild
new file mode 100644
index 000000000000..a83e43ba57cf
--- /dev/null
+++ b/sci-chemistry/raster3d/raster3d-3.0.2.ebuild
@@ -0,0 +1,106 @@
+# Copyright 1999-2012 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+
+EAPI=4
+
+inherit eutils fortran-2 flag-o-matic multilib toolchain-funcs versionator prefix
+
+MY_PN="Raster3D"
+MY_PV=$(replace_version_separator 2 -)
+MY_P="${MY_PN}_${MY_PV}"
+
+DESCRIPTION="Generation high quality raster images of proteins or other molecules"
+HOMEPAGE="http://www.bmsc.washington.edu/raster3d/raster3d.html"
+SRC_URI="http://www.bmsc.washington.edu/${PN}/${MY_P}.tar.gz -> ${MY_P}.tar"
+
+LICENSE="Artistic-2"
+SLOT="0"
+KEYWORDS="amd64 ppc x86 ~amd64-linux ~x86-linux"
+IUSE="gd tiff"
+
+RDEPEND="
+	tiff? ( media-libs/tiff:0 )
+	gd? ( media-libs/gd[jpeg,png] )"
+DEPEND="${RDEPEND}"
+
+S="${WORKDIR}/${MY_P}"
+
+src_prepare() {
+	epatch \
+		"${FILESDIR}"/${PV}-as-needed.patch \
+		"${FILESDIR}"/${PV}-gentoo-prefix.patch
+
+	sed \
+		-e "s:MYPF:${PF}:" \
+		-e "s:MYLIB:$(get_libdir):g" \
+		-i Makefile.template || \
+		die "Failed to patch makefile.template"
+
+	if ! use gd; then
+		sed \
+			-e "/GDLIBS/s:^:#:g" \
+			-e "/GDDEFS/s:^:#:g" \
+			-i Makefile.template || die
+	fi
+
+	if ! use tiff; then
+		sed \
+			-e "/TLIBS/s:^:#:g" \
+			-e "/TDEFS/s:^:#:g" \
+			-i Makefile.template || die
+	fi
+
+	if [[ $(tc-getFC) =~ gfortran ]]; then
+		append-cflags -Dgfortran
+	fi
+
+	append-fflags -ffixed-line-length-132
+
+	eprefixify Makefile.template
+	cp Makefile.template Makefile.incl || die
+}
+
+src_compile() {
+	local target
+	local i
+
+	if [[ $(tc-getFC) =~ gfortran ]]; then
+		target="linux"
+	else
+		target="linux-$(tc-getFC)"
+	fi
+
+	for i in render.o ${target} all; do
+		emake \
+			CFLAGS="${CFLAGS}" \
+			LDFLAGS="${LDFLAGS}" \
+			FFLAGS="${FFLAGS}" \
+			CC="$(tc-getCC)"\
+			FC="$(tc-getFC)" \
+			INCDIRS="-I${EPREFIX}/usr/include" \
+			LIBDIRS="-L${EPREFIX}/usr/$(get_libdir)" \
+			${i}
+	done
+}
+
+src_install() {
+	emake prefix="${ED}"/usr \
+			bindir="${ED}"/usr/bin \
+			datadir="${ED}"/usr/share/Raster3D/materials \
+			mandir="${ED}"/usr/share/man/man1 \
+			htmldir="${ED}"/usr/share/doc/${PF}/html \
+			examdir="${ED}"/usr/share/Raster3D/examples \
+			install
+
+	dodir /etc/env.d
+	echo -e "R3D_LIB=${EPREFIX}/usr/share/${NAME}/materials" > \
+		"${ED}"/etc/env.d/10raster3d || \
+		die "Failed to install env file."
+}
+
+pkg_postinst() {
+	elog "Add following line:"
+	elog "<delegate decode=\"r3d\" command='\"render\" < \"%i\" > \"%o\"' />"
+	elog "to ${EPREFIX}/usr/$(get_libdir)/ImageMagick-6.5.8/config/delegates.xml"
+	elog "to make imagemagick use raster3d for .r3d files"
+}
diff --git a/sci-chemistry/raster3d/raster3d-3.0.3.ebuild b/sci-chemistry/raster3d/raster3d-3.0.3.ebuild
new file mode 100644
index 000000000000..309e0dfc1ba5
--- /dev/null
+++ b/sci-chemistry/raster3d/raster3d-3.0.3.ebuild
@@ -0,0 +1,106 @@
+# Copyright 1999-2014 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+
+EAPI=5
+
+inherit eutils fortran-2 flag-o-matic multilib toolchain-funcs versionator prefix
+
+MY_PN="Raster3D"
+MY_PV=$(replace_version_separator 2 -)
+MY_P="${MY_PN}_${MY_PV}"
+
+DESCRIPTION="Generation high quality raster images of proteins or other molecules"
+HOMEPAGE="http://www.bmsc.washington.edu/raster3d/raster3d.html"
+SRC_URI="http://www.bmsc.washington.edu/${PN}/${MY_P}.tar.gz -> ${MY_P}.tar"
+
+LICENSE="Artistic-2"
+SLOT="0"
+KEYWORDS="~amd64 ~ppc ~x86 ~amd64-linux ~x86-linux"
+IUSE="gd tiff"
+
+RDEPEND="
+	tiff? ( media-libs/tiff:0 )
+	gd? ( media-libs/gd[jpeg,png] )"
+DEPEND="${RDEPEND}"
+
+S="${WORKDIR}/${MY_P}"
+
+src_prepare() {
+	epatch \
+		"${FILESDIR}"/3.0.2-as-needed.patch \
+		"${FILESDIR}"/3.0.2-gentoo-prefix.patch
+
+	sed \
+		-e "s:MYPF:${PF}:" \
+		-e "s:MYLIB:$(get_libdir):g" \
+		-i Makefile.template || \
+		die "Failed to patch makefile.template"
+
+	if ! use gd; then
+		sed \
+			-e "/GDLIBS/s:^:#:g" \
+			-e "/GDDEFS/s:^:#:g" \
+			-i Makefile.template || die
+	fi
+
+	if ! use tiff; then
+		sed \
+			-e "/TLIBS/s:^:#:g" \
+			-e "/TDEFS/s:^:#:g" \
+			-i Makefile.template || die
+	fi
+
+	if [[ $(tc-getFC) =~ gfortran ]]; then
+		append-cflags -Dgfortran
+	fi
+
+	append-fflags -ffixed-line-length-132
+
+	eprefixify Makefile.template
+	cp Makefile.template Makefile.incl || die
+}
+
+src_compile() {
+	local target
+	local i
+
+	if [[ $(tc-getFC) =~ gfortran ]]; then
+		target="linux"
+	else
+		target="linux-$(tc-getFC)"
+	fi
+
+	for i in render.o ${target} all; do
+		emake \
+			CFLAGS="${CFLAGS}" \
+			LDFLAGS="${LDFLAGS}" \
+			FFLAGS="${FFLAGS}" \
+			CC="$(tc-getCC)"\
+			FC="$(tc-getFC)" \
+			INCDIRS="-I${EPREFIX}/usr/include" \
+			LIBDIRS="-L${EPREFIX}/usr/$(get_libdir)" \
+			${i}
+	done
+}
+
+src_install() {
+	emake prefix="${ED}"/usr \
+			bindir="${ED}"/usr/bin \
+			datadir="${ED}"/usr/share/Raster3D/materials \
+			mandir="${ED}"/usr/share/man/man1 \
+			htmldir="${ED}"/usr/share/doc/${PF}/html \
+			examdir="${ED}"/usr/share/Raster3D/examples \
+			install
+
+	dodir /etc/env.d
+	echo -e "R3D_LIB=${EPREFIX}/usr/share/${NAME}/materials" > \
+		"${ED}"/etc/env.d/10raster3d || \
+		die "Failed to install env file."
+}
+
+pkg_postinst() {
+	elog "Add following line:"
+	elog "<delegate decode=\"r3d\" command='\"render\" < \"%i\" > \"%o\"' />"
+	elog "to ${EPREFIX}/usr/$(get_libdir)/ImageMagick-6.5.8/config/delegates.xml"
+	elog "to make imagemagick use raster3d for .r3d files"
+}