gentoo resync : 13.11.2021

4 files changed, 0 insertions, 133 deletions

diff --git a/sci-chemistry/openbabel/Manifest b/sci-chemistry/openbabel/Manifest
index 99d16485bdab..267e0dff1be3 100644
--- a/sci-chemistry/openbabel/Manifest
+++ b/sci-chemistry/openbabel/Manifest
@@ -1,8 +1,5 @@
-AUX openbabel-2.3.2-gcc-6_and_7-backport.patch 635 BLAKE2B 4e98dedd149b14d5bb02fb6d2fa03e07242d100c7b41f36f749ff3d587080eeca44aa26ca095d31e0309e45f3780b67deaa97f1177ed35a9b7407bd7c33f78ff SHA512 e1b4402f34d01ced5b4caaa184b4e5544cf47893cfe7958054052b05a57dc34b4d44239a212c7d909f29b9366b83b6df74993f844a20f23748c01272ec093081
-AUX openbabel-2.4.1-gcc-8.patch 707 BLAKE2B 2b40d3e573664d036ef961e0298d34e093370485a07790ec2bb9628b02928f3977c70381ba1337e1394601300c2b7b1f05306476302ef0b894ebfadcd01322d9 SHA512 c23fc09ea9cc72c84782a95cfcc59cba5270bbeb24bc50e8aa5349bb22d691c59684c9ca8fdc870733432429e3d9e0a5c660317ee19fa7e8f3fb62c9ebc2dbbd
 AUX openbabel-2.4.1-gcc10.patch 2317 BLAKE2B a76a4ef8b7502f8a80ebb807d2874d77f2ef5f532fa7b71a398245b737d1d55387121f4c24fc7dda7df47ddac4ad16e9cd12076787bedf0f63872708e9516d99 SHA512 ea37e5c53360728455be3d819c29fc27aa10556451a437e05c71c6a5e2bd5e1cfb4c229ff0e67e6c8ae7554f08b7bb16ad4be9ace36991c9c9f2417574b373f2
 DIST openbabel-2.4.1.tar.gz 11618304 BLAKE2B 8fc051e83add9be6456e281a109bd6bbec282a64ffc83309819f0decbf167b4914fbb7f1966e95e103f268754045b804317f51c79a952ace707c6af2bd320125 SHA512 427e678f0a911bd27b9a8a05e60b6e09f113be4e5dd180daaf80c28d06368e52b57501261755ab3817a8d31f2754db24471fd0ceee706d029386d6f70800e9c6
 DIST openbabel.png 29060 BLAKE2B 8d217d92125cc73462437411dd4e0cc05179cb0934f5ed15a307acc6b549b8ebab250a48a05ef7657f48c6df394f37da9b659de61efb1477b79b573a5b393ad3 SHA512 bbcaaa37663b526c9038ccb9edaf05ccc3ad1a861739a737f05f363098d8402a10b36e341fcc0aca636e809c6c32db99bf987b41719a0c756bf5e31444d3eb70
-EBUILD openbabel-2.4.1-r1.ebuild 2226 BLAKE2B 1342b61d567112528a5d574e0529837d96b53e98ca96a71b05336079f2caf7489b74cf98a83d15d884f19ed24090f1284313cd1b5df552f6482fe6dfa045a40d SHA512 1566ba69f27e97acfbb2950b65844987dc9a21410f42d540e0e3a6c732c151395b80cc6fa371b70414ffcc5b61c445efb6f893653b2b5d353579c73f6804f247
 EBUILD openbabel-2.4.1-r2.ebuild 2178 BLAKE2B fd0d324a28dac54a6b67359b9250ab4331195eeb32c10de46d9d5d4e5c4bce44298eb0953eb06006823b7c6bdc5ab0b7f22b0b3334800e2f06d080a3e24fe311 SHA512 494acf7a358eb01a8bc77713da9135195013833c8bc993adad25221715238e53309719c0e42bdcd8ee076d35b26228946cfad5e08aab3259119db741c27ae5bd
 MISC metadata.xml 666 BLAKE2B 717970113d4ce316eb1d4504a9b3f2e8137edad184e6f6f8d169d9c45ae781048ecb13c6e3bfcd334480cfb67ccc8055e1f34a22f706a3a3ccd19dda3538d143 SHA512 ae12c4813154b6571eddad77e7da986f2c341b32bc3ebcf13e63cf058ffac5cabc458ce8dd3d1bf761453ef7936260a07aaec7f50fe46c2b710b92e8833d7b96
diff --git a/sci-chemistry/openbabel/files/openbabel-2.3.2-gcc-6_and_7-backport.patch b/sci-chemistry/openbabel/files/openbabel-2.3.2-gcc-6_and_7-backport.patch
deleted file mode 100644
index e23dc6020ee5..000000000000
--- a/sci-chemistry/openbabel/files/openbabel-2.3.2-gcc-6_and_7-backport.patch
+++ /dev/null
@@ -1,13 +0,0 @@
-diff --git a/CMakeLists.txt b/CMakeLists.txt
-index 0ee545cf..7f4b944e 100755
---- a/CMakeLists.txt
-+++ b/CMakeLists.txt
-@@ -239,7 +239,7 @@ check_type_size(clock_t CLOCK_T)
- # Get the GCC version - from KDE4 cmake files
- if(CMAKE_COMPILER_IS_GNUCXX)
-   exec_program(${CMAKE_C_COMPILER} ARGS --version OUTPUT_VARIABLE _gcc_version_info)
--  string(REGEX MATCH "[345]\\.[0-9]\\.[0-9]" _gcc_version "${_gcc_version_info}")
-+  string(REGEX MATCH "[34567]\\.[0-9]\\.[0-9]" _gcc_version "${_gcc_version_info}")
-   # gcc on mac just reports: "gcc (GCC) 3.3 20030304 ..." without the
-   # patch level, handle this here:
-   if (NOT _gcc_version)
diff --git a/sci-chemistry/openbabel/files/openbabel-2.4.1-gcc-8.patch b/sci-chemistry/openbabel/files/openbabel-2.4.1-gcc-8.patch
deleted file mode 100644
index a4aa3947f2ee..000000000000
--- a/sci-chemistry/openbabel/files/openbabel-2.4.1-gcc-8.patch
+++ /dev/null
@@ -1,15 +0,0 @@
-https://bugs.gentoo.org/654800
-Fixed-by: milan hodoscek
-diff --git a/../old/CMakeLists.txt b/CMakeLists.txt
-index dc38d1b..801207e 100644
---- a/../old/CMakeLists.txt
-+++ b/CMakeLists.txt
-@@ -239,7 +239,7 @@ check_type_size(clock_t CLOCK_T)
- # Get the GCC version - from KDE4 cmake files
- if(CMAKE_COMPILER_IS_GNUCXX)
-   exec_program(${CMAKE_C_COMPILER} ARGS --version OUTPUT_VARIABLE _gcc_version_info)
--  string(REGEX MATCH "[34567]\\.[0-9]\\.[0-9]" _gcc_version "${_gcc_version_info}")
-+  string(REGEX MATCH "[3456789]\\.[0-9]\\.[0-9]" _gcc_version "${_gcc_version_info}")
-   # gcc on mac just reports: "gcc (GCC) 3.3 20030304 ..." without the
-   # patch level, handle this here:
-   if (NOT _gcc_version)
diff --git a/sci-chemistry/openbabel/openbabel-2.4.1-r1.ebuild b/sci-chemistry/openbabel/openbabel-2.4.1-r1.ebuild
deleted file mode 100644
index db8203212fa9..000000000000
--- a/sci-chemistry/openbabel/openbabel-2.4.1-r1.ebuild
+++ /dev/null
@@ -1,102 +0,0 @@
-# Copyright 1999-2020 Gentoo Authors
-# Distributed under the terms of the GNU General Public License v2
-
-EAPI=7
-WX_GTK_VER="3.0"
-
-inherit cmake-utils desktop optfeature toolchain-funcs wxwidgets
-
-DESCRIPTION="Interconverts file formats used in molecular modeling"
-HOMEPAGE="http://openbabel.org/wiki/Main_Page"
-SRC_URI="
-	mirror://sourceforge/openbabel/${P}.tar.gz
-	https://openbabel.org/docs/dev/_static/babel130.png -> ${PN}.png
-"
-
-# See src/CMakeLists.txt for LIBRARY_VERSION
-SLOT="0/5.0.0"
-LICENSE="GPL-2"
-KEYWORDS="amd64 ~arm x86 ~amd64-linux ~x86-linux ~ppc-macos"
-IUSE="doc openmp test wxwidgets"
-RESTRICT="!test? ( test )"
-
-RDEPEND="
-	dev-cpp/eigen:3
-	dev-libs/libxml2:2
-	sci-libs/inchi
-	sys-libs/zlib
-	wxwidgets? ( x11-libs/wxGTK:${WX_GTK_VER}[X] )
-"
-DEPEND="${RDEPEND}"
-BDEPEND="
-	>=dev-util/cmake-2.4.8
-	doc? ( app-doc/doxygen )
-"
-
-DOCS=( AUTHORS NEWS.md README.md THANKS doc/dioxin.{inc,mol2} doc/README.{dioxin.pov,povray} )
-
-PATCHES=(
-	"${FILESDIR}"/${PN}-2.3.2-gcc-6_and_7-backport.patch
-	"${FILESDIR}"/${P}-gcc-8.patch
-)
-
-pkg_setup() {
-	if use openmp; then
-		if [[ $(tc-getCC) == *gcc ]] && ! tc-has-openmp; then
-			ewarn "OpenMP is not available in your current selected gcc"
-			die "need openmp capable gcc"
-		fi
-		FORTRAN_NEED_OPENMP=1
-	fi
-}
-
-src_prepare() {
-	sed \
-		-e '/__GNUC__/s:== 4:>= 4:g' \
-		-i include/openbabel/shared_ptr.h || die
-	cmake-utils_src_prepare
-}
-
-src_configure() {
-	use wxwidgets && setup-wxwidgets
-	local mycmakeargs=(
-		-DOPENBABEL_USE_SYSTEM_INCHI=ON
-		-DENABLE_OPENMP=$(usex openmp)
-		-DBUILD_GUI=$(usex wxwidgets)
-	)
-
-	cmake-utils_src_configure
-}
-
-src_install() {
-	docinto html
-	dodoc doc/{*.html,*.png}
-	if use doc ; then
-		docinto html/API
-		dodoc -r doc/API/html/*
-	fi
-
-	make_desktop_entry obgui "Open Babel" "${PN}"
-	doicon "${DISTDIR}/${PN}.png"
-
-	cmake-utils_src_install
-}
-
-src_test() {
-	local mycmakeargs=(
-		-DOPENBABEL_USE_SYSTEM_INCHI=ON
-		-DPYTHON_EXECUTABLE=false
-		-DOPENMP=$(usex openmp)
-		-DBUILD_GUI=$(usex wxwidgets)
-		-DTESTS=$(usex test)
-	)
-
-	cmake-utils_src_configure
-	cmake-utils_src_compile
-	cmake-utils_src_test -E py
-}
-
-pkg_postinst() {
-	optfeature "perl support" sci-chemistry/openbabel-perl
-	optfeature "python support" sci-chemistry/openbabel-python
-}