diff options
| author | V3n3RiX <venerix@koprulu.sector> | 2024-04-15 12:04:03 +0100 |
|---|---|---|
| committer | V3n3RiX <venerix@koprulu.sector> | 2024-04-15 12:04:03 +0100 |
| commit | 7fa8a1e3f149eea4c844c47cfe26136ed7614c58 (patch) | |
| tree | e514d1b9999d088064bee1e34a3a3c500d6d7a07 /sci-chemistry/mdtraj | |
| parent | d993571e2ee444d08f4e9e90d493ee37338657e3 (diff) | |
gentoo auto-resync : 15:04:2024 - 12:04:02
Diffstat (limited to 'sci-chemistry/mdtraj')
| -rw-r--r-- | sci-chemistry/mdtraj/Manifest | 4 | ||||
| -rw-r--r-- | sci-chemistry/mdtraj/files/mdtraj-1.9.7-python311.patch | 16 | ||||
| -rw-r--r-- | sci-chemistry/mdtraj/mdtraj-1.9.7.ebuild | 49 | ||||
| -rw-r--r-- | sci-chemistry/mdtraj/metadata.xml | 12 |
4 files changed, 0 insertions, 81 deletions
diff --git a/sci-chemistry/mdtraj/Manifest b/sci-chemistry/mdtraj/Manifest deleted file mode 100644 index c968c31ee89a..000000000000 --- a/sci-chemistry/mdtraj/Manifest +++ /dev/null @@ -1,4 +0,0 @@ -AUX mdtraj-1.9.7-python311.patch 588 BLAKE2B 74d4b4ead237ffe0c1cfbd8f006e31c8faed2ef91f2d3fcf92d6ea2c6edc593815558fac0485bdefd80d6cacc7459979b96da314c2f7d18e0d614e31a4547d52 SHA512 f540d34fe9824e2a871dd891b4b3fbbfc5a9e6851c41083a0d2f7da4e412029cad0d6ad0fb60c923070dd696e99d9a93c5c5e535cf581cafe7419e18b96fc75b -DIST mdtraj-1.9.7.tar.gz 2087085 BLAKE2B 430b42eddee0be8beba47994efd16515727970ac7acb36007c9b153cdb474551e5ea228f78a194fa9672d5b169753a9db3c090412bf749b3f1e9323bad9f52de SHA512 5dc9d474909a160e0b1d7989325e8190d1c593087f0130854094eb9c49bc00fd631ea19142d396d49aa7a3dadddaf535b5e811f7574ffff36f0cd22f14691067 -EBUILD mdtraj-1.9.7.ebuild 1217 BLAKE2B 95991ab3a3697b1b00dc3d1e6b5bfb4e7ab66e1672c466e23e16681ddcc2a62ee5cd04130b0050d18e6a4ed18b8a917708822c125c5c188cdcad64028e21bef1 SHA512 07ab8716aaf4dab09407ad0351ddc65f3597dad6d1449722c6a6a984c0dcab5886b5f4fed67293c3df0de1ed41a7313d77e5b58d0f32877c5049379ec210234b -MISC metadata.xml 376 BLAKE2B 9fae78491c72370939157fcbf6f452831a46f919ffe0894d404cebff2d095735aaacfdbcae8e8500872ae69bfc790dfb8e788b9a904b9f44f82c873ed678299e SHA512 cce4d328ee75176dc53c4d8b7d1b74e153aeec929eeb15158054c557ddbaa2206b9bf3a7d729629bf8abfa0d8ce7f01206f9f240c2e78b390987cf014ee63669 diff --git a/sci-chemistry/mdtraj/files/mdtraj-1.9.7-python311.patch b/sci-chemistry/mdtraj/files/mdtraj-1.9.7-python311.patch deleted file mode 100644 index 303c819aaee4..000000000000 --- a/sci-chemistry/mdtraj/files/mdtraj-1.9.7-python311.patch +++ /dev/null @@ -1,16 +0,0 @@ -Index: mdtraj/setup.py -=================================================================== ---- mdtraj.orig/setup.py 2023-01-18 15:26:51.424826255 +0100 -+++ mdtraj/setup.py 2023-01-18 15:26:51.420826223 +0100 -@@ -298,6 +298,10 @@ - - for e in extensions: - e.include_dirs.append(np.get_include()) -- metadata['ext_modules'] = cythonize(extensions, language_level=sys.version_info[0]) -+ metadata['ext_modules'] = cythonize( -+ extensions, -+ language_level=sys.version_info[0], -+ force=True, -+ ) - - setup(**metadata) diff --git a/sci-chemistry/mdtraj/mdtraj-1.9.7.ebuild b/sci-chemistry/mdtraj/mdtraj-1.9.7.ebuild deleted file mode 100644 index 75356685592c..000000000000 --- a/sci-chemistry/mdtraj/mdtraj-1.9.7.ebuild +++ /dev/null @@ -1,49 +0,0 @@ -# Copyright 1999-2024 Gentoo Authors -# Distributed under the terms of the GNU General Public License v2 - -EAPI=8 -PYTHON_COMPAT=( python3_{10..11} ) - -inherit distutils-r1 pypi - -DESCRIPTION="Read, write and analyze MD trajectories with only a few lines of Python code" -HOMEPAGE="https://mdtraj.org" - -SLOT="0" -LICENSE="LGPL-2.1+" -KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux" - -RDEPEND=" - dev-python/astunparse[${PYTHON_USEDEP}] - dev-python/astor[${PYTHON_USEDEP}] - dev-python/numpy[${PYTHON_USEDEP}] - dev-python/pandas[${PYTHON_USEDEP}] - dev-python/pyparsing[${PYTHON_USEDEP}] - dev-python/networkx[${PYTHON_USEDEP}] - dev-python/scipy[${PYTHON_USEDEP}] - dev-python/tables[${PYTHON_USEDEP}] -" -DEPEND="${RDEPEND} - test? ( - dev-python/ipykernel[${PYTHON_USEDEP}] - dev-python/jupyter-client[${PYTHON_USEDEP}] - dev-python/nbformat[${PYTHON_USEDEP}] - dev-python/scikit-learn[${PYTHON_USEDEP}] - ) -" -# <cython-3 for bug #911646 -BDEPEND=" - <dev-python/cython-3[${PYTHON_USEDEP}] -" - -distutils_enable_tests --install pytest - -PATCHES=( - "${FILESDIR}/${P}-python311.patch" -) - -python_prepare_all() { - sed -e "s:re.match('build.*(mdtraj.*)', output_dir).group(1):'.':g" \ - -i basesetup.py || die - distutils-r1_python_prepare_all -} diff --git a/sci-chemistry/mdtraj/metadata.xml b/sci-chemistry/mdtraj/metadata.xml deleted file mode 100644 index b91aca7d360a..000000000000 --- a/sci-chemistry/mdtraj/metadata.xml +++ /dev/null @@ -1,12 +0,0 @@ -<?xml version="1.0" encoding="UTF-8"?> -<!DOCTYPE pkgmetadata SYSTEM "https://www.gentoo.org/dtd/metadata.dtd"> -<pkgmetadata> - <maintainer type="project"> - <email>sci@gentoo.org</email> - <name>Gentoo Science Project</name> - </maintainer> - <upstream> - <remote-id type="github">mdtraj/mdtraj</remote-id> - <remote-id type="pypi">mdtraj</remote-id> - </upstream> -</pkgmetadata> |