diff options
author | V3n3RiX <venerix@redcorelinux.org> | 2017-12-15 17:25:28 +0000 |
---|---|---|
committer | V3n3RiX <venerix@redcorelinux.org> | 2017-12-15 17:25:28 +0000 |
commit | 6b933047f46efec1aa747570f945344254227457 (patch) | |
tree | a12a4b87b38f954c4de435272cf4b90d721df5e8 /sci-chemistry/gromacs | |
parent | f45955e60d4da9b7f4a1088c98042f9c06669039 (diff) |
gentoo resync : 15.12.2017
Diffstat (limited to 'sci-chemistry/gromacs')
-rw-r--r-- | sci-chemistry/gromacs/Manifest | 35 | ||||
-rw-r--r-- | sci-chemistry/gromacs/files/gromacs-2018-fix-build.patch | 71 | ||||
-rw-r--r-- | sci-chemistry/gromacs/gromacs-2018_beta2.ebuild (renamed from sci-chemistry/gromacs/gromacs-2018_beta1.ebuild) | 4 |
3 files changed, 17 insertions, 93 deletions
diff --git a/sci-chemistry/gromacs/Manifest b/sci-chemistry/gromacs/Manifest index f8cd6987508d..0b1437c19d14 100644 --- a/sci-chemistry/gromacs/Manifest +++ b/sci-chemistry/gromacs/Manifest @@ -1,20 +1,19 @@ -AUX gromacs-2018-fix-build.patch 2797 BLAKE2B 410cf7dd4fe6f47dcdc0ce828884accc8c9f6e973ea130f20a9bf74b153e1ce118ac9c808e7305aad01cce947dd7e1546617becc61e0626278f67c6dce6fa454 SHA512 229dfb531d0bc240fca8e4548b5a3afd8280e7ebbe8006f6da9f59108469808b25ba90b7145ceb8f50e99adc93385daafc97f594ebd86ab11bf683f7e8af44c7 -DIST gromacs-2016.1.tar.gz 27336258 SHA256 9e7d2892a903777b982bc9ab4306de969d92cb45b51a562f523ec5fe58db41e3 SHA512 d30a4ad5faa6e12c95b8e94acaabc387d9aab3780490f5442c48ccac2f86bef6dca60df5bb6097dbc68ab28e6f1a15e234e1244606afdf12a841b88ece65c97b WHIRLPOOL 4be9c84d99286889dda23d9f1e2dd7b2d87a70740fb686bd58e59155771e897471d0920b02c5ec529a01a4b01428ebb2ca5b27e4d8df9034d2d3b33c5ab1a1ca -DIST gromacs-2016.2.tar.gz 27339623 SHA256 b6ac3632b848ab0c19f8f319dd5b58fcd09b8e2005ee7509478606613e5409a5 SHA512 f5e74bb8c126823c90d205ac0f0835e61fdd13a4550bc15aa9c972ee9b187f6451cdc90877c17276d2f889d61abb5eaa5ea1b54f7cbf3da67074146c749c1aa6 WHIRLPOOL 698c4d4e67266483be4f1047eb947b243b5c8caa3c5e30bdab6b5f0dd302bb51ac5aa6e3a3357beab567cf71c1b8ecc1f9684a89754d18f963dd6f5fc90a33f4 -DIST gromacs-2016.3.tar.gz 27342692 SHA256 7bf00e74a9d38b7cef9356141d20e4ba9387289cbbfd4d11be479ef932d77d27 SHA512 16593df0a52620766fb86cfeb16328793503f860cb07cdbbd503ba7f41e6430efb4848389b7179ca3907b57311162666d05224b454e1afb1b74b220f38498d86 WHIRLPOOL dfe31f212545ae2baf7373fde31f715a8df203d098d3ace915d4269b7bf16d06a1f91ead33ccbf8a17e9e0091b593818d0ce2eff151ce532238a8c27f5e20cda -DIST gromacs-2016.4.tar.gz 27368706 SHA256 4be9d3bfda0bdf3b5c53041e0b8344f7d22b75128759d9bfa9442fe65c289264 SHA512 69661d2a7a8a5259be277de35e2baa4b688d1f7bef225fc7d733a9b00c6ee135dcbad517c7c9f751121647c2fbd085f2c9cdf22dbd941c7ebc5d3b09e7e08f1f WHIRLPOOL c1586377d2a27f0b529370efb63e09ecca64cdb3d418fe9bc4f3ea1ff82ff5293d159834f4ed5d0136d801095d6f4085722e0d91bce873776fa4549853497ff7 -DIST gromacs-2016.tar.gz 27321561 SHA256 aa0a27cd13050a4b70aacfbd169ddce2fe507c7e668f460ecf6cf32afcac5771 SHA512 756771baaa85a1d16e7d5b8e4c96bbd1c04c7acdc536a253886cff186316330f06d60d206a0159efb15f47f161c779d3757dc5dbceab8c097241c1382d376201 WHIRLPOOL 1cc3d3797e1aaf93e1e0cb2e71173896e33fee2bb03f4e97e06be3ab85842e6da3feaf8701425358f1d701e00159ff6ce3b24fa1488d5e8ef70a1acbb914361c -DIST gromacs-2018-beta1.tar.gz 29857800 BLAKE2B 221ed414c1dc73b59df27dfb6dd22ef094152bba7a8346cd0d0164e9a0aa5463a7d836dfb13e98ac8cdbef2ae4a0503763a5c445a5e1c73815b3592d8b8f97fe SHA512 6e827b7b33589ccc7ef1d237c4e8ce06749a2c47f59956d383fdb59439a34874a9e0e3a3cca1d209425353a7dcf0f963de035dd0281d4c8aad0c921e6bbc7b93 -DIST gromacs-5.0.4.tar.gz 26342095 SHA256 78068eeccc0b950018ddb45c41280e53c8bedae4639dca48e17c940f8896b23b SHA512 bc62b623bf71dcaa948aaf7563a3d3afa973da0702062848a20323db202e862dcee413197dacd1472866ccb40fce7709e283177b1c6c49514064f23e6c46b5ee WHIRLPOOL d8458d3d563e015e830622ae0c924e896765a6329ffe4cb1a31c7aef3c804f392d29e3f1db5617051e85058403422f7d69a160a6c7cc810564696d88f9d50bd4 -DIST gromacs-5.1.3.tar.gz 27095702 SHA256 c962d9446939a9ba9905e7ca440c9306fd310f08600da3b744806bfd0eacccde SHA512 9ab26e1b2268f8d567b89b2d99d0b75b937b28edceaec56d17ca3243c76faa31255ffc0c45d762c7c693fe500b00e36ad43b80572d1d7f92dc87f9d2d98c0ba6 WHIRLPOOL bdd9c63ceb5e61963c4edd0af815cc34a3f237d8dee410c834b9b55bb82374de65b437828390a668282e50428b9907b887cd5265caf2a2007fc7673e7ab23733 -DIST regressiontests-2016.1.tar.gz 67094518 SHA256 10c9f50ff3cb32cf629aa35e35d957965dcfce4af84a6569e6d65a16c4e09eb7 SHA512 fc01c802d81400373a147171881f3b7b9309402e8ffb08287ba393aefbb701ba93bbe0b9549ff6fa264a8befbba445c2d2c7450633063a724f78ec8ca81ae8c9 WHIRLPOOL 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3039b5b46bf99dc2e34a61ed0f47f7355087c260bd1accc119f9ed99bb03c4645d05df41e301cfc6a6de6a9a369b2bf4e01a54852100577e40605e091bbe24e8 SHA512 59902c1973c33ea8f003f21a737dc7cc64da3258112322eedc9834b53628134a6817d5ee5b3950c9bfd97a3a0580aef88ddef0609ef2c58693c96c7575651e01 +DIST regressiontests-2018-beta2.tar.gz 67867984 BLAKE2B d5a68dd30c92d1ccfd08b7074b41771c08e94be9556524bf5c13517711cc74ec945aa8bb167cdc4f954b12ac214f9c24a2935ceed6a92c6ecd2a0d1cc860fb63 SHA512 2dcacf52220972b0eae03da7e917e2e2bc85acc4cc2adcddefbe5d6176d5a5200eb77aeb55df06942fa88078f25f623c7b3c586fde852d6045b9caa0337d802a +DIST regressiontests-5.0.4.tar.gz 65193251 BLAKE2B c5e5f23adcc2639fe652bc252533307c7fda44453d506603242968bd8588c7394028b2c3c7a9252f807a050d40e8f78735e904dfe517d3db8ae962051f4826c1 SHA512 747725fa28c1c9525596bdeeb8809e45268e19036c11dac67d043aa1c51748688ca37eb6014eb7e819eb927a8b9ca2631d0ace4cdff8ed491b08c316c530ab65 +DIST regressiontests-5.1.3.tar.gz 66994083 BLAKE2B 7009f65ad0138664ac84e57f8bc7cce5d18a59f99943e56b6642583120bfce279e005ac0bacd2db8904ea477a48e2b938c64de46a65fa5d08fce6009d53583c3 SHA512 486e86eb3b75bae822abe82dac4e1098aa13723bd04214021f835a2f0b847303f015a9ececc33aa5ae63d31a2eeae07e512f22464b6c0e26d1286b0781578022 EBUILD gromacs-2016.1.ebuild 7987 BLAKE2B 45d8b50b3ee54c8c701eb8c6533c1dc7d680eb0f5c40cdf1a75e81b59bd2d603b4235f6e4942e40211b748b7cf8239c90f8d613b20bdc44fca48d23f9c45ae14 SHA512 ce2b0d2730e87831a517468033cada7097ba431d8a60dcef77a04c9e05bf4cfacb6eb500a5196e378f4c69e5020f8e9f871eac6e61dd2776834aee006ecb167f EBUILD gromacs-2016.2.ebuild 7971 BLAKE2B 90510b56d31e59f2f7f76e7772b55e4acdb825af6e8df46da40c7aeb6b7d4b986253b10ac71fbd04c749dd3935b1eeb154e7d0aac7b21147859fb03b57e4e687 SHA512 7a85084cc29da0d3da6c9aabf65320edb38cd682146cc1b739120b728c6704c3e20941b9022c846b84a111e3ca88f29ca21cdbcdf4c5b7204989ac194bf15725 EBUILD gromacs-2016.3.ebuild 7974 BLAKE2B ec37b1dbbbbe9c3aab0d7819f48c15e7c29d2855ac9d1b0b43b364bdfd11d8fae675c6ea8b69cee9966c5022f340b139553f58a592eb637c997fd579b3ba97b1 SHA512 9a3415f66fdd5832abf764b6adfe5deccb62b3f233ccd9156e1caac61907835c13623a3772673c43c9a3e9dbe544e83b2f20953a09d9b598c6af0120cfed558d @@ -22,7 +21,7 @@ EBUILD gromacs-2016.4.ebuild 7987 BLAKE2B 45d8b50b3ee54c8c701eb8c6533c1dc7d680eb EBUILD gromacs-2016.9999.ebuild 7987 BLAKE2B 45d8b50b3ee54c8c701eb8c6533c1dc7d680eb0f5c40cdf1a75e81b59bd2d603b4235f6e4942e40211b748b7cf8239c90f8d613b20bdc44fca48d23f9c45ae14 SHA512 ce2b0d2730e87831a517468033cada7097ba431d8a60dcef77a04c9e05bf4cfacb6eb500a5196e378f4c69e5020f8e9f871eac6e61dd2776834aee006ecb167f EBUILD gromacs-2016.ebuild 7968 BLAKE2B c0ba44661dce5ccda3c2378fad57e88ca90d15cb1914d6214ee4559e8ebd6c6c700624b32abf168a4a653cc5794fac9fab71024a9b7bc5464d404d768ac74ef1 SHA512 3ca5d4ae9b01a106b279bc828e42366a017b9517a450b773b944c6d12dce64199e3a80d280e4c475c637c70009a1a0fd1ca74f99b03f08067a10d9e9ad450d8f EBUILD gromacs-2018.9999.ebuild 7899 BLAKE2B 8053de4c12e2201d37e8d0a077d33fc0b103b79d73379488c46bc638ba763b55ebf69ae53180ffd850e4b860fc03a1c3ec57049f1b257e04e0322ed482afcd51 SHA512 734710474160c6a55206b332e5370bd9e2d0092aed19c4c1ccab7f5d9567eac2a47d163a50aa607f8c7e8e2ccc6eadeb9b394e9f638ac85eafe5f74ced68fd02 -EBUILD gromacs-2018_beta1.ebuild 7955 BLAKE2B c26e1b835fa94c9e7531a292a6aa79a3a0659fea032085a02b1aff77ce71388017760a4be5bd72bc5a41cf688489ba78e5d6ab134b4c086300e2c0c2f9b36f01 SHA512 5c14d982e7db5ec1727df4d4a8578c5b28cbc0d8f192d20fd18cc88efdf2bf3f26ead61c08136227d8f043f726967a84bc5f252a2da830852cf8c396a3bd1d98 +EBUILD gromacs-2018_beta2.ebuild 7899 BLAKE2B 8053de4c12e2201d37e8d0a077d33fc0b103b79d73379488c46bc638ba763b55ebf69ae53180ffd850e4b860fc03a1c3ec57049f1b257e04e0322ed482afcd51 SHA512 734710474160c6a55206b332e5370bd9e2d0092aed19c4c1ccab7f5d9567eac2a47d163a50aa607f8c7e8e2ccc6eadeb9b394e9f638ac85eafe5f74ced68fd02 EBUILD gromacs-4.6.9999.ebuild 8110 BLAKE2B dd8ac9cbc4abfcc75a3a188c59cdbe5111f363404ff5a787f64b05d4bd411deebb50f172f09963800ed87997788b2e678617805e65a523bed19aa6ef18fe2b96 SHA512 2206e257f0b29b6f3a90c5d7739079b9add3e04f2a3acbd58c814811b389b5d51b3594815a94529d1de43deb380504029c302d18fc16d63a81c92727254e863e EBUILD gromacs-5.0.4.ebuild 8429 BLAKE2B c06c423365fa79befd5a4f0b6314e77b96d983c84df776ce84fddc79d35ce735d856d1184e5913af0c8cd3a0c4e9087110af9bd4402e2bce1f014e64a8a585a7 SHA512 d1e91cc25c5f90bd0fbad15060cae9c8bf1235ca45a2b72521b3a4f5f091bdd7d32ec2e6ff2bb22cd3fe165092f11a24ea148ae8000b8517f0b8671f6c2af6f2 EBUILD gromacs-5.0.9999.ebuild 8439 BLAKE2B 33d51254e62593a58c636bd902f43edc553ad11af306d1d022278b223eda15b0772097f26565df74a1118bd5b144e5b93aac09cdb995123ccbae2856889c31b2 SHA512 6756116cdeae9c21b094f74ea1b1d9f41617467dc736878cdcff27fed9f53b338830a608e23e87238d0756884799fbc5d62f02685774ea86c239ecc3e8804814 diff --git a/sci-chemistry/gromacs/files/gromacs-2018-fix-build.patch b/sci-chemistry/gromacs/files/gromacs-2018-fix-build.patch deleted file mode 100644 index 2ed6a19f31b0..000000000000 --- a/sci-chemistry/gromacs/files/gromacs-2018-fix-build.patch +++ /dev/null @@ -1,71 +0,0 @@ -From 81e68584512b21ec572d2561c25a1b19982aa0be Mon Sep 17 00:00:00 2001 -From: Alexey Shvetsov <alexxy@omrb.pnpi.spb.ru> -Date: Fri, 1 Dec 2017 17:12:36 +0300 -Subject: [PATCH] Fix build with cmake 3.10 on Linux - -Without this fix cmake will fail with - --- Detecting CXX compiler ABI info - done --- Detecting CXX compile features --- Detecting CXX compile features - done -CMake Error at cmake/gmxCTestUtilities.cmake:56 (file): - file STRINGS file - "/var/tmp/portage/sci-chemistry/gromacs-2018_beta1/work/gromacs-2018_beta1_float/DartConfiguration.tcl" - cannot be read. -Call Stack (most recent call first): - CMakeLists.txt:89 (gmx_ctest_init) - --- Performing Test CXXFLAG_STD_CXX0X --- Performing Test CXXFLAG_STD_CXX0X - Success --- Performing Test CXX11_SUPPORTED --- Performing Test CXX11_SUPPORTED - Success -.... -.... -.... --- Looking for inttypes.h --- Looking for inttypes.h - found --- <<< Gentoo configuration >>> -Build type Gentoo -Install path /usr -Compiler flags: -C -march=core-avx2 -O2 -pipe -march=native -mtune=native -mfpmath=sse -mavx2 -C++ -march=core-avx2 -O2 -pipe -march=native -mtune=native -mfpmath=sse -mavx2 -std=c++11 -Linker flags: -Executable -Wl,-O1 -Wl,--as-needed -Module -Wl,-O1 -Wl,--as-needed -Shared -Wl,-O1 -Wl,--as-needed - --- Configuring incomplete, errors occurred! -See also "/var/tmp/portage/sci-chemistry/gromacs-2018_beta1/work/gromacs-2018_beta1_float/CMakeFiles/CMakeOutput.log". -See also "/var/tmp/portage/sci-chemistry/gromacs-2018_beta1/work/gromacs-2018_beta1_float/CMakeFiles/CMakeError.log". - -Change-Id: Ie04c2e5f5884f05c3648fed7289157e73fd8d81f -Signed-off-by: Alexey Shvetsov <alexxy@omrb.pnpi.spb.ru> ---- - cmake/gmxCTestUtilities.cmake | 10 ++++++---- - 1 file changed, 6 insertions(+), 4 deletions(-) - -diff --git a/cmake/gmxCTestUtilities.cmake b/cmake/gmxCTestUtilities.cmake -index 89715f910..3685df648 100644 ---- a/cmake/gmxCTestUtilities.cmake -+++ b/cmake/gmxCTestUtilities.cmake -@@ -50,10 +50,12 @@ macro (gmx_ctest_init) - set(MEMORYCHECK_TYPE "AddressSanitizer") - endif() - include(CTest) -- # At least with CMake 3.4.1 on OS X, AddressSanitizer support in CTest -- # does not work without this... -- set(_ctest_config_file "${PROJECT_BINARY_DIR}/DartConfiguration.tcl") -- file(STRINGS ${_ctest_config_file} _existing REGEX "^CMakeCommand: ") -+ if(APPLE) -+ # At least with CMake 3.4.1 on OS X, AddressSanitizer support in CTest -+ # does not work without this... -+ set(_ctest_config_file "${PROJECT_BINARY_DIR}/DartConfiguration.tcl") -+ file(STRINGS ${_ctest_config_file} _existing REGEX "^CMakeCommand: ") -+ endif() - if (NOT _existing) - file(APPEND ${_ctest_config_file} "\nCMakeCommand: ${CMAKE_COMMAND}\n") - endif() --- -2.15.0 - diff --git a/sci-chemistry/gromacs/gromacs-2018_beta1.ebuild b/sci-chemistry/gromacs/gromacs-2018_beta2.ebuild index 3e0dd9b80bc9..315835fdc606 100644 --- a/sci-chemistry/gromacs/gromacs-2018_beta1.ebuild +++ b/sci-chemistry/gromacs/gromacs-2018_beta2.ebuild @@ -66,10 +66,6 @@ REQUIRED_USE=" DOCS=( AUTHORS README ) -PATCHES=( - "${FILESDIR}/${PN}-2018-fix-build.patch" - ) - if [[ ${PV} != *9999 ]]; then S="${WORKDIR}/${PN}-${PV/_/-}" fi |