diff options
| author | V3n3RiX <venerix@redcorelinux.org> | 2018-06-16 05:02:38 +0100 |
|---|---|---|
| committer | V3n3RiX <venerix@redcorelinux.org> | 2018-06-16 05:02:38 +0100 |
| commit | f1bc537f089cc8477a9a18db597cb349e1b00e91 (patch) | |
| tree | c48eb730c43e5f35729fabbe5cb4bfbe4a1bc794 /sci-biology | |
| parent | cb3e8c6af7661fbcafdcacc7e0ecdfb610d098fa (diff) | |
gentoo resync : 16.06.2018
Diffstat (limited to 'sci-biology')
| -rw-r--r-- | sci-biology/Manifest.gz | bin | 25284 -> 25285 bytes | |||
| -rw-r--r-- | sci-biology/aaindex/Manifest | 2 | ||||
| -rw-r--r-- | sci-biology/aaindex/aaindex-9.1-r1.ebuild | 4 | ||||
| -rw-r--r-- | sci-biology/rebase/Manifest | 2 | ||||
| -rw-r--r-- | sci-biology/rebase/rebase-1806.ebuild | 45 |
5 files changed, 50 insertions, 3 deletions
diff --git a/sci-biology/Manifest.gz b/sci-biology/Manifest.gz Binary files differindex 2010d1c76704..9997c5c606d2 100644 --- a/sci-biology/Manifest.gz +++ b/sci-biology/Manifest.gz diff --git a/sci-biology/aaindex/Manifest b/sci-biology/aaindex/Manifest index fd520fb56b1d..11d66cb98978 100644 --- a/sci-biology/aaindex/Manifest +++ b/sci-biology/aaindex/Manifest @@ -1,3 +1,3 @@ DIST aaindex-9.1.tar.bz2 133780 BLAKE2B 2e0a3c9f6f9e9a6d18f7812196595776a03e688b83799a24b63f659fe4c08b50de396d6aa07e80e3beea776d29210c1c71194deecea19faa8bf36204d8544f42 SHA512 d35760712a3f9d8c0d64e32ff450802eab20294851e569cbb9614610704f687c9ec56c440e6009b5c75c45ae12bd7968e28afcc414309318e94b092507df16d8 -EBUILD aaindex-9.1-r1.ebuild 967 BLAKE2B 4919376ca66bdd1a2c829fbd0fb3068173121bd60a66455deb2d5da2d69bfc2d9cfa7484f868da79f671951d65ff28f2910c9b80a20a7b95ef5e41e02feabed8 SHA512 97b5c262baaa4bec1f0d32d3f343252862f5f2510cf6c4972e63d500fcc6169a8eb8e62d1f0e64f0f4ff5c2b90cbfeb24abbbc676d1c05701f092e520d7ac490 +EBUILD aaindex-9.1-r1.ebuild 968 BLAKE2B 557da1f01228bb57d9248dec2c50675b9825e1f2739412a6d585972e3f0182fdc1cd52b2c10b605dc615891e4fa14583fc7c9b11f1b716b87983a206be4a0e1f SHA512 a23cac16ea0ceb6368a2e7f68c35514a8be1b9b6eba416347a713c7877bd7da25e2ce1b64367e33263c80ad5bfcab50a3446b11d7568eeda9530641a7e72f70c MISC metadata.xml 1317 BLAKE2B c2ff790b082c9acec5721840ba70e7fc776fadc87b118b57b5decfe6b7f795f9fe9913febcf15aeb2591a1419cf83676ef8fbaa563598ad49eb9256dcbc5a379 SHA512 34360f262abb6d882e95272da0102519c75fac4a367c1e122cb91f3a81788e0693b33ee84f6a602a2fac965fb22ad2cec20c5f2950d3fa16af80cb18a274119d diff --git a/sci-biology/aaindex/aaindex-9.1-r1.ebuild b/sci-biology/aaindex/aaindex-9.1-r1.ebuild index 068902e96fae..b51f64beaefc 100644 --- a/sci-biology/aaindex/aaindex-9.1-r1.ebuild +++ b/sci-biology/aaindex/aaindex-9.1-r1.ebuild @@ -1,10 +1,10 @@ -# Copyright 1999-2017 Gentoo Foundation +# Copyright 1999-2018 Gentoo Foundation # Distributed under the terms of the GNU General Public License v2 EAPI=6 DESCRIPTION="Amino acid indices and similarity matrices" -HOMEPAGE="http://www.genome.jp/aaindex/" +HOMEPAGE="https://www.genome.jp/aaindex/" SRC_URI="mirror://gentoo/${P}.tar.bz2" LICENSE="public-domain" diff --git a/sci-biology/rebase/Manifest b/sci-biology/rebase/Manifest index 301651756b20..7c3b9744f04c 100644 --- a/sci-biology/rebase/Manifest +++ b/sci-biology/rebase/Manifest @@ -3,9 +3,11 @@ DIST rebase-1702.tar.xz 117583312 BLAKE2B 19089d5767c35da22fb95bac7bc030ef593b15 DIST rebase-1703.tar.xz 122252304 BLAKE2B 26afca990e300a5c471f55b1a168b1930212a347b70dd3224a51894bb701540a27a0384bd250caee8e0d0dd4886c6664ab74b20bcfb71fd42d1c73ebf2ce6be6 SHA512 838bf5e09073ff8520403d955a8195298def1d792d1fd3044e7c8896c6202a0340c1e96dbe80e85c5801cd3be3ed63f19488101cca02d46cdf5f1d0521ede796 DIST rebase-1704.tar.xz 124351900 BLAKE2B bdbda714cc07f744b56c83b80a1b0f0a724a990b200c615458852910f282761aaf37a312a388ec7fee94a62ead47e01ddca8b205f2ad05d780a299e7547206f7 SHA512 0e4019d41ccbae86b8cb1f6dfa4c34d3fccbe084a330f04f2fdb774186e35c761655e1619d9a90d444ea3bab0910df1b60cf9a249ee31d66a254d28dd6b32cc7 DIST rebase-1803.tar.xz 152581448 BLAKE2B 7907f0aee9e202f062f5ec4b5e4a112cd0fb3900b3d65dc57ffe4832c5aac088f50c2661f1b9c1bb8b57e7b4f6d453bec2899b460383d06b4e679da13e92aad2 SHA512 ab718e87c33c975bc6a93d3c6be130c9751612b744dc5451bcfde5c10d3d9d68ed4a4d921fff1f48063bfa2e9f3c8a016d4e5e0afa4eb7e4131511767608534b +DIST rebase-1806.tar.xz 161844712 BLAKE2B 901167b502b85e88eaa9a8886c5ccac8bf1ec16a7736694b90f896bd4d87ae3792d09f6b154118a6063e30b94a5633b37a7811aefc1d39467d0043d887aeb64a SHA512 9c9c0ef89c8f8e43516c052a06395d61c423b53a79553ceccd992bf72872ece44696091c11c816213b93532aac54a476fe87475f4f67baaa87bc50f64e847d48 EBUILD rebase-1701.ebuild 1052 BLAKE2B da1b6a61d2ed830a9421862c5539a3cfd0a438c3068c2a00af55fba5f7b5d4c1a3ac9bb9c4d7fc8b3552b9c6cdb7651479c70fc81136ba02d1bee73693e53f8b SHA512 f5ebc17df3c888caebc01f66e813f0482279bfa89bf5ae67ebf67fc3ca6e762246cd40b35d6713510850a63e7322916b9dd8fb88c841b82c7a1734a562df494b EBUILD rebase-1702.ebuild 1091 BLAKE2B 221cc96837849c39c75edcac6179d29b4adbbbceb5a13317993cc23ae8d18c1e24f11cabe9515d99cdd978e75e2c1b635d866ba63aba7f1cb5a0e66a3b22165e SHA512 6b4d6cd81f35284ecee921ca02bf524d4774cc4d9115c50bcc594124d3ef3617db9802e0577a5402ceee0f139a674492e053c532a78cbad3879987b5574c4ebf EBUILD rebase-1703.ebuild 1091 BLAKE2B 221cc96837849c39c75edcac6179d29b4adbbbceb5a13317993cc23ae8d18c1e24f11cabe9515d99cdd978e75e2c1b635d866ba63aba7f1cb5a0e66a3b22165e SHA512 6b4d6cd81f35284ecee921ca02bf524d4774cc4d9115c50bcc594124d3ef3617db9802e0577a5402ceee0f139a674492e053c532a78cbad3879987b5574c4ebf EBUILD rebase-1704.ebuild 1091 BLAKE2B 221cc96837849c39c75edcac6179d29b4adbbbceb5a13317993cc23ae8d18c1e24f11cabe9515d99cdd978e75e2c1b635d866ba63aba7f1cb5a0e66a3b22165e SHA512 6b4d6cd81f35284ecee921ca02bf524d4774cc4d9115c50bcc594124d3ef3617db9802e0577a5402ceee0f139a674492e053c532a78cbad3879987b5574c4ebf EBUILD rebase-1803.ebuild 1091 BLAKE2B ef6b34c8ac22b17109044d8b483d9a7657a9df755f41d4ebb02cbf9756d0514be5c6ebabc67520df121cec563165351b42574d3e1e1300021f58531b45bce2cb SHA512 764e3bbf5537e6753d703dbdd03261ff82da63ad59ffd33a843254343a1677bfc321e322225bc514f949b91dfedc65dbae54ebfb05a73cd2ec70611f70fa954b +EBUILD rebase-1806.ebuild 1091 BLAKE2B ef6b34c8ac22b17109044d8b483d9a7657a9df755f41d4ebb02cbf9756d0514be5c6ebabc67520df121cec563165351b42574d3e1e1300021f58531b45bce2cb SHA512 764e3bbf5537e6753d703dbdd03261ff82da63ad59ffd33a843254343a1677bfc321e322225bc514f949b91dfedc65dbae54ebfb05a73cd2ec70611f70fa954b MISC metadata.xml 907 BLAKE2B 87023eda8004c64dbd6ec605dcc7cff07f247f5cbf140ee65932c1e80ace99be4f43f2e529b9569a0220e2e60e03e88ef323af1c0dbbbdbee5da0eb0e46ba5f2 SHA512 dfbf6a8c60f75b92b056f6dc5b74adfc588ab0b1edb48ba15a6516254a58b736f101036d8061ed2abd69ca202356f6653bdd578f1a94ae54e5f6df6cc2e5155f diff --git a/sci-biology/rebase/rebase-1806.ebuild b/sci-biology/rebase/rebase-1806.ebuild new file mode 100644 index 000000000000..e9944bde30fb --- /dev/null +++ b/sci-biology/rebase/rebase-1806.ebuild @@ -0,0 +1,45 @@ +# Copyright 1999-2018 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 + +EAPI=6 + +MY_PV=${PV#1} + +DESCRIPTION="A restriction enzyme database" +HOMEPAGE="http://rebase.neb.com" +SRC_URI="https://dev.gentoo.org/~jlec/distfiles/${P}.tar.xz" + +SLOT="0" +LICENSE="public-domain" +KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux ~ppc-macos ~sparc-solaris ~x86-solaris" +IUSE="emboss minimal" + +RDEPEND="emboss? ( >=sci-biology/emboss-5.0.0 )" +DEPEND="${RDEPEND}" + +RESTRICT="binchecks strip" + +src_compile() { + if use emboss; then + echo; einfo "Indexing Rebase for usage with EMBOSS." + mkdir REBASE || die + EMBOSS_DATA="." rebaseextract -auto -infile withrefm.${MY_PV} \ + -protofile proto.${MY_PV} -equivalences \ + || die "Indexing Rebase failed." + echo + fi +} + +src_install() { + if ! use minimal; then + insinto /usr/share/${PN} + doins withrefm.${MY_PV} proto.${MY_PV} + fi + newdoc REBASE.DOC README + if use emboss; then + insinto /usr/share/EMBOSS/data/REBASE + doins REBASE/embossre.{enz,ref,sup} + insinto /usr/share/EMBOSS/data + doins REBASE/embossre.equ + fi +} |