diff options
| author | V3n3RiX <venerix@redcorelinux.org> | 2021-09-16 22:05:01 +0100 |
|---|---|---|
| committer | V3n3RiX <venerix@redcorelinux.org> | 2021-09-16 22:05:01 +0100 |
| commit | cc4618c9ba3d974948ebf340b542d8cb01db2f55 (patch) | |
| tree | 125ee67bb9e0d548771cf7b61d04bb1f0dc57687 /sci-biology | |
| parent | 677b7ba5c317778df2ad7e70df94b9b7eec4adbc (diff) | |
gentoo resync : 16.09.2021
Diffstat (limited to 'sci-biology')
258 files changed, 257 insertions, 257 deletions
diff --git a/sci-biology/ApE/Manifest b/sci-biology/ApE/Manifest index d28084033d27..fd0795992443 100644 --- a/sci-biology/ApE/Manifest +++ b/sci-biology/ApE/Manifest @@ -1,3 +1,3 @@ DIST ApE-2.0.7.zip 318454 BLAKE2B 420001d298b8c6b1bc26247446aafe8c3adcf6477ebabc689219c094d46fe5e836d216a493169bac0ccd9c3b669d9421edb3b023a1a39cf74d32a81df09e66d2 SHA512 073e3f96badf4888c10a7c7eb453a3775d5bb9136b0bd836d37d1be784847f887e0c68b37325f430eebfb90c2d94021f10d4e8ede92de89b1ab1ddc1ffdbc254 EBUILD ApE-2.0.7-r1.ebuild 1175 BLAKE2B 0586453b4d2e63a993d98dad8aacde058bf4dbbe19b1e710965238722bfdc2f3e7982581186423a9a4973be158b5c0e78049706876fb27042dee69b264f38402 SHA512 999af11c86a64da5430f89bc605b8f36bb325c52c4ab7dac1d45e607f06aaaae51fdad477cc5d2c75e83ff0be7d70317286f2b7da7db06bc0c25cda1fad76258 -MISC metadata.xml 167 BLAKE2B e4dadf27fd344484f2bccb5b904909c89aac568c32e5b3c44bdf139eacefd4b4fae74419f503d2b7da0dccc1b68ba05d777d11292c0f89270d1ac5c9c703e8ca SHA512 7c8decb24ee3a850e38186cf3c7f8933a28017426806870ad6ef9ceb2533be147a2681fc789b535a81cb528af8c29d90d3006e4f250aee23bd7dea4561294e33 +MISC metadata.xml 168 BLAKE2B 2e0e000b4c3b6ca04c12903fdbe278415c05a822623c52e9aa95cbbf3d50bcb1246b7edbda7d2f6b559af8950c6374e6e0a69b76319964cfe686bf50b0604a57 SHA512 4dcf45d1809e8390a2d8155c8ebfe0dd610203e392aeab0ccd8a10f42cc8532a4925eff32b35e7a6c35598a4efd288229034ec0732299dbd8cfa0acff705fed3 diff --git a/sci-biology/ApE/metadata.xml b/sci-biology/ApE/metadata.xml index 7a38bb900964..115e9d64a669 100644 --- a/sci-biology/ApE/metadata.xml +++ b/sci-biology/ApE/metadata.xml @@ -1,5 +1,5 @@ <?xml version="1.0" encoding="UTF-8"?> -<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<!DOCTYPE pkgmetadata SYSTEM "https://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <!-- maintainer-needed --> </pkgmetadata> diff --git a/sci-biology/GBrowse/Manifest b/sci-biology/GBrowse/Manifest index e92d62a928d6..ddfd14a7c6fc 100644 --- a/sci-biology/GBrowse/Manifest +++ b/sci-biology/GBrowse/Manifest @@ -1,4 +1,4 @@ AUX GBrowseInstall.pm-2.39.patch 2878 BLAKE2B 99ca47ef69aad80322bcc2f0a856a2e0e8d2185189172c842f3bfdc9efbda383f8d00ca5e6a829dbb48f1f668047ec4e66ac83cef433347453a91ee557820c1a SHA512 637dea799290213def1368cdb153463c96964ada99fd6c09d0b95e0d1e42a16942d66ef36282d39b92284ae6eb26c8346d5ad1289b5ec7b2196a1ba5090db85e DIST GBrowse-2.48.tar.gz 11958127 BLAKE2B e9527eb47302775d62e37990c42154b677284fff0f0f9624e9173e30e46c5aebbc8a02ee8dec0a1e98761812ef2363e0183008087bce4d283528b7935b4d5f91 SHA512 d5a07caf1517fb15741e8e6056669763eb04678a42637a9e90788c91e74fb34515b5f86aac10a00f29d8848aceb19d6f5f7258d2dda0e281feee550e9e2fb3db EBUILD GBrowse-2.48-r1.ebuild 1859 BLAKE2B c738aeb5114fc688fea7b2277332530452489c02309926a1acd7a5cde1225577a6c07e432f8aac8515c4d16c97962fbc0833807134292edfc0e3e4b4a768798e SHA512 e763f68e6c3d0d76284a68f918e39c00dfff5be6110852d6f9dde74072d8c1e686157a517c0a15a948bce679a77792d175acf1be1a93326c0e541f544e30086a -MISC metadata.xml 327 BLAKE2B e8a0d72f6cbb085df2578e6bf4a5cafd9306643487adac84a1e60f135977df472ec0fcc5816a2002f2fe2764b919f7e4a838463ae16460e0e0b5710ca9ce5c73 SHA512 12bed277a17513c5e45f782c500c6aa4cbaad988ffb902220dbacde7e908246a62663b976a822c63a5446306ad705ad27c504713dd61e7cf90dd23ce37d98e48 +MISC metadata.xml 328 BLAKE2B ce5ed72774e7d696776952832799cd960fae4bc4034e69d38db80fb3e9eceb77c538b0d6f15c0602582003cfe5e214124714e2e385d3d5707d2df8927b2a46ba SHA512 9bd9535f41bcb395c1d59abdbd4c9e0499aa6d945bf5a8fb79b1fe1b7d2e2864e3276878546160e238f1b04ecdfe95551f32f5d53587d85a8628f90d36ffdbc0 diff --git a/sci-biology/GBrowse/metadata.xml b/sci-biology/GBrowse/metadata.xml index 1473cc001b3d..08238dd44f7a 100644 --- a/sci-biology/GBrowse/metadata.xml +++ b/sci-biology/GBrowse/metadata.xml @@ -1,5 +1,5 @@ <?xml version="1.0" encoding="UTF-8"?> -<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<!DOCTYPE pkgmetadata SYSTEM "https://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <maintainer type="project"> <email>sci-biology@gentoo.org</email> diff --git a/sci-biology/HTSeq/Manifest b/sci-biology/HTSeq/Manifest index 8c6411557344..a6845ab37446 100644 --- a/sci-biology/HTSeq/Manifest +++ b/sci-biology/HTSeq/Manifest @@ -1,4 +1,4 @@ DIST HTSeq-0.12.4.tar.gz 36187218 BLAKE2B 27be4e8783f9e32c10e23ae812069b489eb11dfa4058db43b5db4b8089792351901255103e4d4de1bcf866da3acd13e742adf8d35a9b70305aa156c70dde0837 SHA512 ec4a1a7e9177f103465840ffa9f936a5e887ffd17760b99d4cbdfd5a88e2ab44275fadfcbee153aadc6e828de7be205ed7a07f3a0548457b7c66826341c3ca64 EBUILD HTSeq-0.12.4.ebuild 773 BLAKE2B 78db5ac231e751e473d4e7e94aeeb86995fbf77b7576b404040e1383c99dbfa8fbcedeebdef803944cf542dbc022f95815de340e7a9b4cc3348a444a7f9818a1 SHA512 70fe71d67fd00635025efa19bcdf852da23412d2010057362b389ae67f52bebb83910e7c93f128932d00ed2db1f9c29b3b77cdaf5ce3230a135f9b3cad8d16e2 EBUILD HTSeq-9999.ebuild 773 BLAKE2B 78db5ac231e751e473d4e7e94aeeb86995fbf77b7576b404040e1383c99dbfa8fbcedeebdef803944cf542dbc022f95815de340e7a9b4cc3348a444a7f9818a1 SHA512 70fe71d67fd00635025efa19bcdf852da23412d2010057362b389ae67f52bebb83910e7c93f128932d00ed2db1f9c29b3b77cdaf5ce3230a135f9b3cad8d16e2 -MISC metadata.xml 329 BLAKE2B f06dd42c6a1d3bca399cbe48d519346519b9acb0e4176ee79657e058ad1724b542242704e5cc3237873f338b1b23887715f95673957e533c057464ef07e8634f SHA512 04b82836732bf1415d6ce9d3b4c75139aa7d96382da2fd3343a54053172cffcac9ce96dab49b91852dea1a2a38b73cd90279c2c86496577bd6a79040a1fb6026 +MISC metadata.xml 330 BLAKE2B 0710ed510732fd584ecbee4d193bf2cccf72af692cc5ce7243ab7864f00ba23d22fca0c4b06213d7e40697c0e469c29f36d988c7fa0d8ab6ea985f8df7255388 SHA512 481004c3e6ba51f4e983e265b7a3f9e4281e27c95ea894eb7f166a339059507cb947eddba1d8642d952289936c8145fc20fa26ed11522535d4c097cc6a3cb018 diff --git a/sci-biology/HTSeq/metadata.xml b/sci-biology/HTSeq/metadata.xml index 1b5a1245ecb9..649077f8337e 100644 --- a/sci-biology/HTSeq/metadata.xml +++ b/sci-biology/HTSeq/metadata.xml @@ -1,5 +1,5 @@ <?xml version="1.0" encoding="UTF-8"?> -<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<!DOCTYPE pkgmetadata SYSTEM "https://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <maintainer type="project"> <email>sci-biology@gentoo.org</email> diff --git a/sci-biology/Manifest.gz b/sci-biology/Manifest.gz Binary files differindex 2520a245d9c3..3430aa8cb6fd 100644 --- a/sci-biology/Manifest.gz +++ b/sci-biology/Manifest.gz diff --git a/sci-biology/STAR/Manifest b/sci-biology/STAR/Manifest index d95ade6caf13..3fb4a0879865 100644 --- a/sci-biology/STAR/Manifest +++ b/sci-biology/STAR/Manifest @@ -1,4 +1,4 @@ AUX STAR-2.5.3a-fix-build-system.patch 5318 BLAKE2B 28a839eb61a5b1adef804249328c7917dca2ec765f00a48b90aa42d7da3ca393f7726b7aafdb6d0429a55fe696bd51b0e06d85ef6e50a3a4f5874c731b194f1e SHA512 412bdf74c50869f470f3d7452d3799e92a45da198e50ecad63688e4c24444a25f044d464e462e19ba41c5abf590865e43542cd1b60a1f3948bf357be468e8441 DIST STAR-2.5.3a.tar.gz 9857460 BLAKE2B 32cc633862e6e81f5a5bdfc59986dca74e8adc4970a11a06c501065c5ad9cb37fc788f8e67ab2353292e683c8c385778cd0ffee69c0b15803796dbc445013a43 SHA512 8bd86ad384f2c0331fd701873b02641301f4205a5ff0fceeb800d425da42c53b6c61a74500d37fee7fc13a5bff10e1fb44b9142811883b8f5cd012f51f1f9fdf EBUILD STAR-2.5.3a.ebuild 881 BLAKE2B 692466b512aaa3da2e2323f90576d47c2f5e694a4ac8ee8ce2d887435a1ef964dcab9adbdb3c3f88b43cc5463b258635be0f2b542485ee16bc9ec32b655fcf65 SHA512 9b8a80c19b0da8e697c913a8401c08a71a07511477c71b1dd20748e5487e8bb5ab870c37058d49abc27a5ac56722e98b2d784431c19f7173275b82f41f9a2663 -MISC metadata.xml 340 BLAKE2B af4a68a2c7b9b584b5ce2ec685a88fa9cd42fa0088d3fcb12d4030b03ac59b375da75c04c59f0969f6c3d922085786e990fa574fd54cba30a7fc7fa2d89f4861 SHA512 83e9732928a44ad6bc92168b8a9319be9b5211489cbbe6e78ab92bfc33817c73a2c16f1336737da38a136ea81e6ed2cccd9a007a5ae13752b2bb8765ef6f891a +MISC metadata.xml 341 BLAKE2B 5cf54dcbc5013bbebd80edd8d03456553ec6f7f52527d076f921916ebe9b862c97aae6f641741b81ac44cfc84356ca13e19dd3be2b63c075923a701c22e695c1 SHA512 888d00d5873390206f21aa9daaf78fc8c3f9b88e528c38ca7696779b221fd21acc6beadf543c14e16f74cb600cab479bc3f9bba8625214480583f369e6ea67a8 diff --git a/sci-biology/STAR/metadata.xml b/sci-biology/STAR/metadata.xml index def338693901..dd2e23471998 100644 --- a/sci-biology/STAR/metadata.xml +++ b/sci-biology/STAR/metadata.xml @@ -1,5 +1,5 @@ <?xml version="1.0" encoding="UTF-8"?> -<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<!DOCTYPE pkgmetadata SYSTEM "https://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <maintainer type="project"> <email>sci-biology@gentoo.org</email> diff --git a/sci-biology/aaindex/Manifest b/sci-biology/aaindex/Manifest index 11d66cb98978..472521c5a2e6 100644 --- a/sci-biology/aaindex/Manifest +++ b/sci-biology/aaindex/Manifest @@ -1,3 +1,3 @@ DIST aaindex-9.1.tar.bz2 133780 BLAKE2B 2e0a3c9f6f9e9a6d18f7812196595776a03e688b83799a24b63f659fe4c08b50de396d6aa07e80e3beea776d29210c1c71194deecea19faa8bf36204d8544f42 SHA512 d35760712a3f9d8c0d64e32ff450802eab20294851e569cbb9614610704f687c9ec56c440e6009b5c75c45ae12bd7968e28afcc414309318e94b092507df16d8 EBUILD aaindex-9.1-r1.ebuild 968 BLAKE2B 557da1f01228bb57d9248dec2c50675b9825e1f2739412a6d585972e3f0182fdc1cd52b2c10b605dc615891e4fa14583fc7c9b11f1b716b87983a206be4a0e1f SHA512 a23cac16ea0ceb6368a2e7f68c35514a8be1b9b6eba416347a713c7877bd7da25e2ce1b64367e33263c80ad5bfcab50a3446b11d7568eeda9530641a7e72f70c -MISC metadata.xml 1317 BLAKE2B c2ff790b082c9acec5721840ba70e7fc776fadc87b118b57b5decfe6b7f795f9fe9913febcf15aeb2591a1419cf83676ef8fbaa563598ad49eb9256dcbc5a379 SHA512 34360f262abb6d882e95272da0102519c75fac4a367c1e122cb91f3a81788e0693b33ee84f6a602a2fac965fb22ad2cec20c5f2950d3fa16af80cb18a274119d +MISC metadata.xml 1318 BLAKE2B 2a5b66b8e2ad719be1daf46ee237dffccab7b3472677deb918a35cd714035e5b57c8da64b5d7e4fb0fbe069c4812a4118f3d013a36f01009399bc4b2653110ed SHA512 a79444974fbd48c567293eebdde27066b67cd55afa668e9360dadfac63da200a25a9692ba6134557d94a0dcd110db92fe14974bc2392196e3162cef446d9d481 diff --git a/sci-biology/aaindex/metadata.xml b/sci-biology/aaindex/metadata.xml index ffe91c9020d6..44422e7c1cfd 100644 --- a/sci-biology/aaindex/metadata.xml +++ b/sci-biology/aaindex/metadata.xml @@ -1,5 +1,5 @@ <?xml version="1.0" encoding="UTF-8"?> -<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<!DOCTYPE pkgmetadata SYSTEM "https://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <maintainer type="project"> <email>sci-biology@gentoo.org</email> diff --git a/sci-biology/abyss/Manifest b/sci-biology/abyss/Manifest index e749e0be137f..72c889e36a57 100644 --- a/sci-biology/abyss/Manifest +++ b/sci-biology/abyss/Manifest @@ -1,4 +1,4 @@ AUX abyss-2.0.3-prog-AR.patch 350 BLAKE2B 20e1a428ea02c3c67c5df9b92f623ddea58f2054912d0ca788f0a9890057277cd98babe48d089852541db262ab0a69e95ead2a4b31456a62597ae1d4856e8c5e SHA512 747e9d258767c698a95615ae83db18662ec1851c0a6dfcdcec6aea68dc76415e89b3f85f1f8ff6c04fff22052c787a43948f8f3588220e2dc66cc7262788c52a DIST abyss-2.0.3.tar.gz 1049144 BLAKE2B 1a320cac735747225723f0d636af435ffcac9efb3273323150f258c0f4c27ed81bb104cb06a726aa664118cc9d2224b745d9deebfcac055face01dae3fc9de15 SHA512 15bc833e89839be89dfa35a23ae22ad0f9a19e8efd36211010c9f59e974de7c569576db36e26d6ab302543ff427604b5efb1b7badf62489a5e82a193ef155570 EBUILD abyss-2.0.3-r2.ebuild 1556 BLAKE2B a25f93323564ce83b2a15ed31881a873ddafe688f9277439aef25dbb3a76c6d796984105498c2f547bf00229ce4c465d9e5c22c949c543b29fd61c22a8d52568 SHA512 9c5649115d97c8b6aee3909d092f8429c59c31b9200b71023bb05e3bc2501c3f55a1d4b07c9bacbfd94fc6a10a4a5124a6135b743e29d126856796bab5ea1f3f -MISC metadata.xml 456 BLAKE2B 712d103b33e3b45adad5d7761e88300c6367a6f12de73b8a4a3e72fa4112808a43418756462ab9b4c58946dd7997ea01edc7cbc4675ccdeeb679121cd4a45436 SHA512 9db05a70013fce6d1d2092579ffc0576472c04189e2b73533922e0ac272c4f2485eddbcec64da1bb0b2bdb8ec8cb0d4f4ee9de2105f769d523bf8b57fdbcf589 +MISC metadata.xml 457 BLAKE2B 7941e6d318c33992a00ce167bf738bea01a1c54b3e8381947757880e34f5a38da9bbd91837a34338f81e6d23e363dbbde734cb5075f6bfcf49a694f19d5a24a8 SHA512 e722cef310475d7e4aae8b0a9e23c73c0ab44acf62e6afdb4355da201565aedbedd2f2100676c6c58218909d60b45b1938c3afe13fff62c4fdfbea0ff2ef6e49 diff --git a/sci-biology/abyss/metadata.xml b/sci-biology/abyss/metadata.xml index a4fc7944c7d0..23a340ee3255 100644 --- a/sci-biology/abyss/metadata.xml +++ b/sci-biology/abyss/metadata.xml @@ -1,5 +1,5 @@ <?xml version="1.0" encoding="UTF-8"?> -<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<!DOCTYPE pkgmetadata SYSTEM "https://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <maintainer type="project"> <email>sci-biology@gentoo.org</email> diff --git a/sci-biology/amap/Manifest b/sci-biology/amap/Manifest index eb89d028a7b0..30aa4d674f8a 100644 --- a/sci-biology/amap/Manifest +++ b/sci-biology/amap/Manifest @@ -2,4 +2,4 @@ AUX amap-2.2-includes.patch 1088 BLAKE2B 3b870c229f3efb9819d9f176b59b014ad4bae30 AUX amap-2.2-makefile.patch 1201 BLAKE2B e404de0909f501dbf5005d6c995fbb6ecf588fe06798483703c25d29c070faa6ce5eb06e98e35b8deeeddbeb309eb6560d13af6a0fa64ec9435d00e41f2bfad2 SHA512 8cd43b70299e12f32dd6b46a73e6ef10c7e85b5ec6d152aef69f54954a1083c92570c40bf35ea363084a3626161c3e28d214bb2c5fb76bb396d9be2edaa869a3 DIST amap.2.2.tar.gz 102861 BLAKE2B 7f9b1cb747946232db0b5b469896cc4f83ef78d190e929e28f37df790dfac342e6e7f913797bc9ff00191253318db2d42f79577dc72128d62a21d0e241bfb0e1 SHA512 a297b6eb1b52d5deab65db5bb1344b06a85c7ef6fa4b550798501041091357e605543eaadd85c053a74e857ebdd7b846dca4b226c5c61bedc329bf93c886c18f EBUILD amap-2.2-r4.ebuild 1142 BLAKE2B c4bf57de7f838559bb4fc5c1b6358802fb54dd2a1d5ef401218ce4c2efaf829f8a0c05a45333b81747539d286bb2e5d0233ea19177aa7ef59b691581c27f3ad9 SHA512 22230076080ef49996c9cc8adea62b488a877f95832d88f53094b71ba868b33c5bc5bee170a444f4a4a928e152b1fa8f348fecfbc37600f02db4a79bc4722e8f -MISC metadata.xml 257 BLAKE2B c0d9bf845137c20d86333bbe5f6f7d27e5ae2edbdd6997f870a6678825b5494b8160a4dc5fba6221f252e1146c57d3237f3d7feb098a9beed9c272f57f30d708 SHA512 5be44a06c71b100dfe66effc1d12a9801f6daf2e252f74b6499528644db9b3dd00d51827a984817b78755e8d544f9c674c27c6a370c4c4414ce26a09b478b69b +MISC metadata.xml 258 BLAKE2B 51009df26b3682090e316b4cf4a3afad84001705063be6c74a28fb11bacde48b758dc280bf9d4d049c69e728d9660e737072674ad5ff8068da4f6a49f1f4e203 SHA512 05153e39b77e8b1437a0ba80b66b6bb1b4837d719765cb157b23d5425a625ddb4056422dcbf28d182e039583a0b3863e8429efe80da85a035c96f4c4788ced6d diff --git a/sci-biology/amap/metadata.xml b/sci-biology/amap/metadata.xml index e051c9b41035..b5b66eeee084 100644 --- a/sci-biology/amap/metadata.xml +++ b/sci-biology/amap/metadata.xml @@ -1,5 +1,5 @@ <?xml version="1.0" encoding="UTF-8"?> -<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<!DOCTYPE pkgmetadata SYSTEM "https://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <maintainer type="project"> <email>sci-biology@gentoo.org</email> diff --git a/sci-biology/augustus/Manifest b/sci-biology/augustus/Manifest index f34306941b84..f19e66b189b1 100644 --- a/sci-biology/augustus/Manifest +++ b/sci-biology/augustus/Manifest @@ -1,4 +1,4 @@ AUX augustus-2.5.5-sane-build.patch 5271 BLAKE2B 1ba799aa4d9611087f1455f334dc35616979267bb546aa2ab16f6c8d3d528af84373da482840b455d4d0f0374af24cc3010f6925d4a93c0eb7abe524544fd408 SHA512 5afe12b51b8ce27ef32e8e66dd72be451022757228b4c86dec938b26870885bee06712438a22801a42944d2def8ae8bf4a2d7fdb82e12455c145abcd6f0c4aa1 DIST augustus.2.5.5.tar.gz 70826249 BLAKE2B 3f3f1537c5c614f00298e1835eeb7bbe968987c3e0dee13299e1e26b4abf198d8635a93121b11722d2c90b63ff54cf153c72716d01c3ca033481bb54357b7bcf SHA512 33eb05d5c90200d2fc17026743d3a25e73aa3e217b8546f0bed4c94bcb460597d853377a67896e52e45ead5d736d13ed3b2c91b31fed8216da2920c825e8c20f EBUILD augustus-2.5.5.ebuild 910 BLAKE2B 5cde42582b4873dbaabe4457a4b7b4f5305b928cbfd7afc3c067cbeb3ea042e82faa56810b4f72078d57f7b0ecd4c96eaa30cfde5ef73d67c26fd05d0035d84e SHA512 03103b4d5cec5dfd46971f1a089d0c02d3cc5ecf7647ee5589e8e297b3f60689c2c763b8c8f2137becfa0e11c0e3c7977186c466085c3065f88eaf5a469bcb9c -MISC metadata.xml 267 BLAKE2B 7cf386952842945148119de3263231db4d1046d5f54811f7e303ed8ec4d27cbc1960b99c92daf6f32e5b981c2fb9f50ec666be6193865d6e18541b7427a152a9 SHA512 91ab266d9ab24401bc0fec759c5b6cfcf44a3c5669fc31c7301d79770839bb5dfa0e155d949392ef06176b4a0b2c32b91b1b54b0027f972db61f0a5e54644403 +MISC metadata.xml 268 BLAKE2B a4d67334cdad8626d60e46b677ee1c83f569e5e20b3739a7664bb33be1829f8478af35e135bf734a6ff151b8543ea6c4ecafbf822cee8189f7e7096bd9698711 SHA512 59d3d8213b1a219396b74b6f4188c01e1cb4eb1c63e6792ce1e7fdb8000d1a4625919337ff77288ca7f7e07d9753f481d2381a06f554012633cd678194c980de diff --git a/sci-biology/augustus/metadata.xml b/sci-biology/augustus/metadata.xml index 959160fe46b1..ccdff086e20b 100644 --- a/sci-biology/augustus/metadata.xml +++ b/sci-biology/augustus/metadata.xml @@ -1,5 +1,5 @@ <?xml version="1.0" encoding="UTF-8"?> -<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<!DOCTYPE pkgmetadata SYSTEM "https://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <maintainer type="project"> <email>sci-biology@gentoo.org</email> diff --git a/sci-biology/bamtools/Manifest b/sci-biology/bamtools/Manifest index d20930205b3d..6ebf7bfa1b87 100644 --- a/sci-biology/bamtools/Manifest +++ b/sci-biology/bamtools/Manifest @@ -1,4 +1,4 @@ DIST bamtools-2.5.2.tar.gz 245729 BLAKE2B 5034ea1ec16b205488e421461ed74d8a98eae87eb7fc061e5928ad15512497a5338c9dbacbde51009c940acd55c25fccc2f3be2840d2821a8755a2a0b0370944 SHA512 540a4664abfbd1304600c17d47424c312a46e4238b0f0868f4037ddcc54c4487424e3d7820153084b3b512be8a4603e3ec5377a73311a617061460de1bfe49ef EBUILD bamtools-2.5.2.ebuild 773 BLAKE2B 6ea567dd2491608a99828855c96205d6853809cbb9842443335df9c232b549c8606aebb643f22aad8e0eba5a670a3cea762d7508730a58e879b3029723854f89 SHA512 b35a77cd608eaffe1c8dbc4361ef69c7f21788c43ecc55962204a8fe963158654ec4079d498712980e7e115d1f8d1c0c63cedbca848ff3a49465d867ef4a4e64 EBUILD bamtools-9999.ebuild 773 BLAKE2B 58b5af7760648a6919a875736cc52e851e9ff30cb5b308bdfd69a014e67e74a857f8f5a46c5f9d8e398b25383b3b316bfddf3b0fa3b09ca845ef31d87aab3e76 SHA512 7be431719d95ee3e44e79e752d201a940974cc343d20cba8e743a9e6566d6958abefa93f72fafab020d354fc84a42ab68ff131253375c442b91949e175860ff6 -MISC metadata.xml 643 BLAKE2B 80a4127e1186ff37b02f8baa15eb45584da61eef96e83bfa59c39035c868baee4b39e0157f4ccd797de2f09a0ab85f217631065b82efe53a9919db1dc06d1058 SHA512 dee93787f3016396b3883d9c2c4c5e8ad6f1043e94cdecb7b0210b2cc5883ceace4f4eaf41d80fd1f917af543399de058988d349885402d4847c6505da62837e +MISC metadata.xml 644 BLAKE2B 36c9e0f480f074308d95db24b0d35570e2123dcf3d23c0a4671746bf5bcd8a902e15b512ac046ef46ad3f41fed5d837e31b1daddb5a496a35b851755bb16b6ba SHA512 6b64596a0d3a0c3f177eb47ccbaf01fc5c86fe5ff6b235a41d6a25de46f969ac44c2bb10dcc66c8baf94000a167bdf39deb555ef81ce790f8784793a42855511 diff --git a/sci-biology/bamtools/metadata.xml b/sci-biology/bamtools/metadata.xml index 9aa0cee0cf72..aaba26efdc12 100644 --- a/sci-biology/bamtools/metadata.xml +++ b/sci-biology/bamtools/metadata.xml @@ -1,5 +1,5 @@ <?xml version="1.0" encoding="UTF-8"?> -<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<!DOCTYPE pkgmetadata SYSTEM "https://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <maintainer type="project"> <email>sci-biology@gentoo.org</email> diff --git a/sci-biology/bcftools/Manifest b/sci-biology/bcftools/Manifest index cbaad97eda76..4b55d93fe29d 100644 --- a/sci-biology/bcftools/Manifest +++ b/sci-biology/bcftools/Manifest @@ -1,3 +1,3 @@ DIST bcftools-1.10.2.tar.bz2 3702679 BLAKE2B 51acce94d463868562199206504dc8afb50c671c11139c5a96f52cedf135bb7a46115c69411b9943b970a2395e3c866275c85e345a4a40a90194d1094698314e SHA512 f07e405efa16b9b1b18521342df3eaf840ed1b3028b736a6b4d139012ea85769ddfb3cd3a2c94958415d984d07805dfcd3d4bbec0db401b3f071b861a56d1300 EBUILD bcftools-1.10.2.ebuild 864 BLAKE2B b98c493d6e50d982917ecbf32c424a45231c3f512a49a0c9cd675cbb3d5f21a57d62cc53a20556663b6fd1d58a68df01a9ed56185dd5f400b8ee5b5c7b5497fd SHA512 c8c3173376a35824ce10413e7cba172d6a90dae91352a292df5603f1a7e17cd5987fc91b463b030221b577bce5424ae7a219625cb684cb3fa2f6777581bb19bb -MISC metadata.xml 343 BLAKE2B e1664c6d67ebde81b9f99b69d442e0b16891ecd392fddd55ed2aaa885dcb2f4ca39cd627cd3f6367f39b13e35eb1141119e53756d6efc4ac62c819ab1d611633 SHA512 cfa167a5733f40d7e36e9e229229acd883ba7bfd812afb9060c742c505354b1c754070e2e897a48d7611a123b9606b6f43a0816c089e71bf64f3d0dbd8b7184d +MISC metadata.xml 344 BLAKE2B 37f8e82e8a5a9ad572580a7e5ae6daa6911d672f17b8526f81b236cbc2e50a32c4cd2566aaed9f5feee016d7e2de7db2a40b60616e86c3e8cae307d60cebc70e SHA512 0160c9606089d610613d71dc0aa9c9c5e5266483fdc9c407b6e0ed911eac8f8b32ffaf5a49bbb427393c8240e9868df51f0fc68b2f45467f65d9b3d54b0ddde1 diff --git a/sci-biology/bcftools/metadata.xml b/sci-biology/bcftools/metadata.xml index 0421097960c1..0ba86185e50d 100644 --- a/sci-biology/bcftools/metadata.xml +++ b/sci-biology/bcftools/metadata.xml @@ -1,5 +1,5 @@ <?xml version="1.0" encoding="UTF-8"?> -<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<!DOCTYPE pkgmetadata SYSTEM "https://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <maintainer type="project"> <email>sci-biology@gentoo.org</email> diff --git a/sci-biology/bedtools/Manifest b/sci-biology/bedtools/Manifest index 7ed1666c1527..31952fc3668b 100644 --- a/sci-biology/bedtools/Manifest +++ b/sci-biology/bedtools/Manifest @@ -5,4 +5,4 @@ DIST bedtools-2.29.2.tar.gz 20646485 BLAKE2B cdfff7a0f5300f31c2487e98bd28dc7e8b7 DIST bedtools-2.30.0.tar.gz 20648577 BLAKE2B 042bc31e846455cb1c20199f7a27a3850851f7c256a45b1e674c7aa48ecedc211b0fdfc5e25f915b588f21447e757ebff2bba16a65905bb10d3c88e4b17b1db1 SHA512 3993243cc3db12d194d6220aeae200e6af843d6d32d4e5a9a82d04c9d119f8ed47e618e87241edfa82cfac081bc9a40ada18f097d21b0cafc5f912ae012701c9 EBUILD bedtools-2.29.2.ebuild 1232 BLAKE2B 77bf05d3c03b9f38a3ebd4ef4028666a2ae445aa9605f5d1d457bf7a26bdfc362fedfc5906994fddc24b29e18214484e3b464ce3d8644bc4ccb006dfb76051be SHA512 862ee4bbaee73a9274a8f9c9bbadedbd00f3d6d59380abcd48d35c9d922e7e2a849e4c8357f65657e55258afea611dbe34ed77735f1cb79fab5bada5cbfa79af EBUILD bedtools-2.30.0.ebuild 1184 BLAKE2B 128c85d2fae5a45068f3c6f0c64b93902dcfaf0eb1464fbc8546ac7b62827d62fbd01cab422e23153cc9e2975f3d43f628305a3986caf6df36923059f45d6a6c SHA512 77c36f5abcf230a4eff2f7215998ed8188d0e6dda8c1c1de94c16e6dd3b7b480bb6abed0d6bcf0baec2ebbb1d678c51a0c1b16aebc34785e49245e5d30b0626a -MISC metadata.xml 406 BLAKE2B 5a16830031644c5087241b9e20afcb6315095c877e2b019eace76ee0602929c168c2273e27e99f03ca3c1a57db0bf728c2d8ccc39b7f80588bb215d1fd6a3ea6 SHA512 35a9b50a772503e6691faf1e2f1093bd6ffd5f6f5be08b1ad8581948f4f3e8fb7e54faa101cff757fc561ed71696253114c32fb6293df59cda3e8fd7c24d2bb0 +MISC metadata.xml 407 BLAKE2B f3c2890ef1648dcfc7ae92c56fec8c111de2cb82ba4c8f7402756fa9db6f2ee43fa3ccb9a75db5d1e2ca7893ed3041efc22452814944e0e56f1a589353b47774 SHA512 925406053fd5c1aecb5ef26c522b3f410c6f9a639dc1ab7790a4124513c870af5b818adc53875c93ab19a36d444b8fb23c5ef10cc11ed50080785bbe60d1eb98 diff --git a/sci-biology/bedtools/metadata.xml b/sci-biology/bedtools/metadata.xml index ec82800df5dd..063085dad8ee 100644 --- a/sci-biology/bedtools/metadata.xml +++ b/sci-biology/bedtools/metadata.xml @@ -1,5 +1,5 @@ <?xml version="1.0" encoding="UTF-8"?> -<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<!DOCTYPE pkgmetadata SYSTEM "https://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <maintainer type="project"> <email>sci-biology@gentoo.org</email> diff --git a/sci-biology/bfast/Manifest b/sci-biology/bfast/Manifest index 9c749a7da2e0..1c2c90571e1c 100644 --- a/sci-biology/bfast/Manifest +++ b/sci-biology/bfast/Manifest @@ -3,4 +3,4 @@ AUX bfast-0.7.0a-autotools.patch 1268 BLAKE2B b5da950d0230322f0a95b7c1417aec5fc4 AUX bfast-0.7.0a-test-sourcing.patch 1399 BLAKE2B 2cc246d437da36a28d6fd86fe8c4acb78ba06120672158c16305c108298f46f4cabf37193f793e9b32ecb8fddc022f076bc845d06564f23ed9f412f5d7c22378 SHA512 3257038564997ae1b2bdd814e893825951c9cc72934cc204d6a3cd1dd31c796d26b76b6801dca4722be3e10ac309e0d177ddf725a6b6a2c5fe01106bd35d5a5f DIST bfast-0.7.0a.tar.gz 2456617 BLAKE2B a841e7651e731dbb3faf22eb03dce5d2008c84f9a6198204d3c41aea26626058e3a23375bc0e7e8fc142d4898e09ddbb168016c71a7b79527e602e06ec329151 SHA512 16e7ec5101c478f0dfc171016cbacb2b9240773e43b2d40eeb42d0e47afcee50a6dd5838e043a0326fc1ca9a87d3e55b42326a7f17b7c5654ef9825913860836 EBUILD bfast-0.7.0a.ebuild 595 BLAKE2B 257ddca11ba647f033b22f98afa4d718f1260687a17cf8386dec115f9e0dfc764a30f94af2cdb4f3f63057e1286e104bb9e3a666dfd44a4f004aa9c84b8f5e92 SHA512 5ce28ea79f9dc037eb432a23f742e7c9efb18be1317324c2200fa0a66f7e938526daa386c146922ae45a1b0f8c96460bdd2700db77c172b18935cd06dc1353eb -MISC metadata.xml 346 BLAKE2B cf096d053302cd40548e541557cbe72f41e81328a93b41a6e19ae88122e9939d5e6414eb6f60ee6e96411f43a073151f7d98ab780858afa16c50c1a5e37f2c48 SHA512 b402eeeb37be04022693af8692b128bb257a69b8eeb75170506352fe05fa6e7154c908267bbab7af7d38d1eee26ad6d98e6be5f9c8647181aa491b3fb1680b62 +MISC metadata.xml 347 BLAKE2B fda3b1b1f01d1cadeae82a76b136ff36dca51aa87133f2413169e8e42f9551a5982aa865638d0fcd62aacac988bfca1cb273b4fc631f645a017be4242c481f66 SHA512 56e5f098713a53961f0967972197ee5eee51175964a4299c4aa647f66a47abf882304384a5dac51134ab1f806d300c7278c4479912b723f0a7ab5d19b0fe0834 diff --git a/sci-biology/bfast/metadata.xml b/sci-biology/bfast/metadata.xml index 933dea84e1b3..5ec4a95ff146 100644 --- a/sci-biology/bfast/metadata.xml +++ b/sci-biology/bfast/metadata.xml @@ -1,5 +1,5 @@ <?xml version="1.0" encoding="UTF-8"?> -<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<!DOCTYPE pkgmetadata SYSTEM "https://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <maintainer type="project"> <email>sci-biology@gentoo.org</email> diff --git a/sci-biology/biogrep/Manifest b/sci-biology/biogrep/Manifest index 7c35ee25cf0d..cedc556cfcda 100644 --- a/sci-biology/biogrep/Manifest +++ b/sci-biology/biogrep/Manifest @@ -1,4 +1,4 @@ DIST biogrep-1.0.pdf 22179 BLAKE2B 9a401b50480ae8fe903b96082b8011cc02d8f65d97cdcc2659e835d8fc01969f756d33e14428aeee802f5dd994e3b5277b6e705ec73f92c0fb2be255e5a1588f SHA512 b0430bded7529a14e3e551e4c7deeffdbdbbe674b5a4bd68afa359b2a4e9f0b8fb4a6474673d298508fa728cf83a328327860e60b3777e92afb15fa87f076411 DIST biogrep-1.0.tar.gz 71867 BLAKE2B 48baf2b13f65e3b2d79fabccf978c8a3b275e6b915fed56a2fa9a0cd98ab36ff3810dbe9be1447a32b5f95b5ed006cc19dbd0673ec9e617e4a9115dcddf240a4 SHA512 da07ea6f5f6fd601a94dc1b9495b204affcdc4d5e7fedfebbb65d6382ef0573e43b4ebd081c24909b2790ec2ae532505604112d4943c3e4e6575e13bdcdf1ae3 EBUILD biogrep-1.0-r2.ebuild 866 BLAKE2B 76ffe1136628b52524a32e67c4e739f635609fb6411e1397b478b473aec3a75c4dac60def3dc40ce9c6989fca62736006f706be0a834ad4a228677a137499235 SHA512 224009fb74306670ecff19a0c9d271608aadb20fea285ff9146c8e45c08918629c3ab0176388b6dfadbbd07fb462e1b4d8cc5f1dff93957dfdefde0f4e780fb9 -MISC metadata.xml 261 BLAKE2B 3768c926bca545090342a947ba83e706a8954c51b99a5e7b3476ba5198cd326fe1c3b8efb51dfd6be1800682556b8ceea065e388981463ab32f3d687951872f3 SHA512 537da0d3aa2741ebe4442d5dd9b53409decfc9d12ca8e5af8e737c4deb2910c884207e2d441025d19469816100889f04c11038bdffd6a1a15c6217495445090a +MISC metadata.xml 262 BLAKE2B adaacf2ac22ce09f8b1b68f538773c1e2101156181ff302eca2ce1280ee5d45db4eb302a8eee1bbead5e55942443dd16ef924cfbfdc95a1658dc6a9f460468a2 SHA512 ac924b6b530d96645f173d40f7a2bf0e3abbf49048ebf7fadcea3dd553cd25504f0e68a103395de1fb59a2e5e11497dcead601be01cc6f0295ccbc4155f67e3f diff --git a/sci-biology/biogrep/metadata.xml b/sci-biology/biogrep/metadata.xml index 8417d1580d40..bdabd1d83788 100644 --- a/sci-biology/biogrep/metadata.xml +++ b/sci-biology/biogrep/metadata.xml @@ -1,5 +1,5 @@ <?xml version="1.0" encoding="UTF-8"?> -<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<!DOCTYPE pkgmetadata SYSTEM "https://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <maintainer type="project"> <email>sci-biology@gentoo.org</email> diff --git a/sci-biology/biopandas/Manifest b/sci-biology/biopandas/Manifest index 7709c8badf15..bd7eb9ad377c 100644 --- a/sci-biology/biopandas/Manifest +++ b/sci-biology/biopandas/Manifest @@ -1,3 +1,3 @@ DIST biopandas-0.2.7.tar.gz 255846 BLAKE2B b8c6a66f51a00266bc1a271ecfe00b4cfddd24b9766e63e2ad4187048ddd8f985d70eb8083b1be3887a0fd9b666c97553029ecd90c7b73ae882e5347bbc54d2e SHA512 cf4f12601b7f63ca3d5e9a17c6628e4975968f722c9db72e32c00e80ec335c5bf6a928a5f887b16ecd316c49b298d77634cbe1c4ef1ca505379b1de5335e2569 EBUILD biopandas-0.2.7.ebuild 1029 BLAKE2B 49b93e7b34244beead930e791edc37b7fa11e160a3c21b9260b86e13455d3698da8ea51eba8140ea4bb1abb92901af1764c43360a10d6cc5b8c48cf86f40dbb0 SHA512 e2d99ec571d6758e86bf5149dafec4829857b36a0048599fde3b72ba9a1bf344fda4f54b31ab25e30e44509c1cf8f11cb0c14e20c3770fc025f3ab2e6092b26c -MISC metadata.xml 536 BLAKE2B e3cb776d0332fff486a7e1ea1353c54694ff687d4685bbb51728db0ed2025bb3d09d39cf7c9ea9f11546cbf9c4727661348e2f5fdfc13ffac2329ef6dfbe7450 SHA512 502803e30ecfac53516b56501a7bffeb49c3c0bc44ce5b3dd87aac5c745de614c235523ba3be374fcbede1a9a7bcf11c328abb27d82e087b275303f38b80b166 +MISC metadata.xml 537 BLAKE2B 3a84070766aa469d204a25e3dec6864db46db27a681327124b208f64b782b598d3b46b4495e08c3e9fd0484980ce1966b498cfd74d81f8d20849f6e531e0bc3e SHA512 13055720124f4586a2949140068976090fe90d997035a8426ee0833c0df9eb082abe838312d44df78c2b28ab16a9cd48df181a2082496278243e4b0e5f8fd25a diff --git a/sci-biology/biopandas/metadata.xml b/sci-biology/biopandas/metadata.xml index f23da0b1ebe2..1b4a0fc84ad0 100644 --- a/sci-biology/biopandas/metadata.xml +++ b/sci-biology/biopandas/metadata.xml @@ -1,5 +1,5 @@ <?xml version="1.0" encoding="UTF-8"?> -<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<!DOCTYPE pkgmetadata SYSTEM "https://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <maintainer type="project"> <email>sci-biology@gentoo.org</email> diff --git a/sci-biology/bioperl-db/Manifest b/sci-biology/bioperl-db/Manifest index c68b7ebf07eb..4a69d8ed75c3 100644 --- a/sci-biology/bioperl-db/Manifest +++ b/sci-biology/bioperl-db/Manifest @@ -1,4 +1,4 @@ AUX bioperl-db-1.6.9-db.patch 1567 BLAKE2B 40a1ba874e745630d886d0531ab90385bb2207073bebc823c52f595fa4752b0b9bf310adf7148ba4c7c5c1ec19ddec226d28a34311c932a0f37da6af1c0dd422 SHA512 a0a2ca951645b70b2e4eb3390598b2a42d6631109500238d6fc482d97a616ec1881738e5dc9af118d37fdf50657916ff275124f409510cf15515dfbc829766c0 DIST BioPerl-DB-1.006900.tar.gz 492799 BLAKE2B fb923533ecdb74e868a3aef0c0c6ba8da419ae3c0e9d2e8c55297aad15563b135b6b00fd158481b31dcacd1125f7e10a557052bd4b04eed3a400c972653ff757 SHA512 e06b8b9aa4188a83128f910d7b4a031f69d36f75e4f2d7210357366379024ef39b58eca97112b5b419f141c82b7518086273cc97c9637382ee5e0ddb9ce28746 EBUILD bioperl-db-1.6.9-r1.ebuild 2337 BLAKE2B 1280789bf53691480419a2cac16eebef3dcce19e98b4216660fba58c582c82b30848f01e47e9adf85a5a1288e0da0114ae12eec29ef05fc680f9ffb3188703e1 SHA512 c954983c93fdd76aa5faa600c1d855d7f4e98da88adc63d93a7d6e7c795a14ab75bc073ae6452570d6042f8dca1927b8dc6b23554fb86be367b2368556631e36 -MISC metadata.xml 344 BLAKE2B 9a757119f1a9939d57a4f9517b8dd5d68732419d7365fda69af107719aa0dba15c79ac16c746cfe28ce36beb060aaa867bffb078175da25961f9f8b233634d34 SHA512 a477289255247669c332915665c4d414ba2857b5716a60e8aec1bf8d1c38009c9fcfb7421a02bdbd9ad566be32bf2b21f57fd21c745aa62185d5dcd13d78bf70 +MISC metadata.xml 345 BLAKE2B 3bc3614e7030d42358f8c616b364d20788507eb62fdb72b9c581bf6ae7629bd1d258a8ff97de8e09e28e83217d88cecb53744c1d36892da04ec264db93287d12 SHA512 e543c3388ae8594a533eb55919e4cff9fbcefef82b043c151c9c1d0732918803a2811c0c3352684483fa0e5494f6559f864a9d453300c790fb4cafc765a418d5 diff --git a/sci-biology/bioperl-db/metadata.xml b/sci-biology/bioperl-db/metadata.xml index 09e1cb381b7f..171d7d240b71 100644 --- a/sci-biology/bioperl-db/metadata.xml +++ b/sci-biology/bioperl-db/metadata.xml @@ -1,5 +1,5 @@ <?xml version="1.0" encoding="UTF-8"?> -<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<!DOCTYPE pkgmetadata SYSTEM "https://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <maintainer type="project"> <email>sci-biology@gentoo.org</email> diff --git a/sci-biology/bioperl-network/Manifest b/sci-biology/bioperl-network/Manifest index 2edc92b69cbd..fbf732ca2134 100644 --- a/sci-biology/bioperl-network/Manifest +++ b/sci-biology/bioperl-network/Manifest @@ -1,3 +1,3 @@ DIST BioPerl-Network-1.006900.tar.gz 2198089 BLAKE2B 67197ed356f642d9e85f779019f6854f4baa3963e059895b89c75ae56f8b5a075ca04b04ce5c7622d46a3a2f55e1c7d80af695085c607ed7fda5517c71c579f3 SHA512 d0a95af17cb024cbc615c784f1dbcddd7bfc5b54524163ab127f1077ded18df222fe067c085f3dd17dd416d6417b8f726526be164e1e33144991393f6b6d5842 EBUILD bioperl-network-1.6.9.ebuild 634 BLAKE2B 7cb788c94d5017434f0f81dc5adbd3d64c31980d12f4e739862fc5127dea25f40964f11b384d42e73022b3fa4031d69e78bcb9f8933bab867827144d83596a02 SHA512 491c8190c28b7add4c1263038534705a7798afd29fbdfc853267f4b663b1fd92c21acfe47330357b83323e4ac05e39e52f78fa526ae1ae0059701a002f7ce03c -MISC metadata.xml 349 BLAKE2B 18f5a67acf0859a50cca897d39e3e1a200eba44198d5c2bb1176d29579dd97dfcaf8b2cb8ffa4baf9c2adc7072f24b0344701a986b7a4f5a8491cf85b4086579 SHA512 dc3b8e26619cb4ff0dffeb79aa91f402a35cb2f673ecfd0bdac9d3667be82c248dcdd246185a006e8b91c9b66157689eaaf8ee464e00c54227c2c78cd9827b63 +MISC metadata.xml 350 BLAKE2B 3ed0b50a1cba8de14da5b9a7c73e9b4ae75ab71a4065e950115d0fbe29ca948e23597ecd14e921f64a22ccd023a991c1f8eb8e6571c7fa6280116664f9e6f6c1 SHA512 ef397b00868ba21c8718958189efd201deb6316ed7030cc07547cee07c20b98af13c57f778e39835abc9dbbd6898a497e2a371bb3c0803fbf06bfdf44ea2b90f diff --git a/sci-biology/bioperl-network/metadata.xml b/sci-biology/bioperl-network/metadata.xml index 754b8d123313..868dd703d25b 100644 --- a/sci-biology/bioperl-network/metadata.xml +++ b/sci-biology/bioperl-network/metadata.xml @@ -1,5 +1,5 @@ <?xml version="1.0" encoding="UTF-8"?> -<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<!DOCTYPE pkgmetadata SYSTEM "https://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <maintainer type="project"> <email>sci-biology@gentoo.org</email> diff --git a/sci-biology/bioperl-run/Manifest b/sci-biology/bioperl-run/Manifest index 2e4b7b17ab01..636cac1d11c0 100644 --- a/sci-biology/bioperl-run/Manifest +++ b/sci-biology/bioperl-run/Manifest @@ -1,3 +1,3 @@ DIST BioPerl-Run-1.006900.tar.gz 14546677 BLAKE2B 9faf58796b9874b19b66e74abc51ed1d1b6e2928bcf9904506b2af6b2b7c1772a90eab24bf0e7c050fd4a2b120ba506ad5edb8a693496b7468fe7c8d05d11f0a SHA512 47f2b853885c604291ac0aba3269b897de59cf7da6f7d54a50ff950cca836338091309df550f32695159c620be23391306d0421d2bbc22eebbb61a9e280ad83c EBUILD bioperl-run-1.6.9.ebuild 927 BLAKE2B 035f172e5ee9d617bb5eb0b522d17f07624be54773c58b21b5435835ebc3cde67028ef7cc3254cec5f257b67256d10bd19c2f1d390b26e73cc877971320b3116 SHA512 798dfb678a67013499b317281bbe8b0f6012fa2daabb5f77223e1839f1dc2b926c866e39164de745855577adea46f972a25726b8fcc8bcfe969c44634c38455b -MISC metadata.xml 345 BLAKE2B 91a15324464d913875ad2c449052e2f26d7c48cac90e9e36a66d91ff43d02e424841b8758121ec06625402dbadbfd4455e7e39a17009832fc4b2655d381379ae SHA512 23370e5fb887d48f37f6ef1d3fa45092fb3b45e111f82488153ce5235bdd7671bed559093927ad92e3c7876f390e385d032fbf9e76a55cb00a0da7fa80bea2ad +MISC metadata.xml 346 BLAKE2B 95f61e91a850b29694d458a88cca4d4594bc307c3ff2f3987b8da6d0d1344cb00f9c8d0c2657b35adc167887cc75340808a3637f571bdf4de12d52f92b87bae3 SHA512 2ffa2072f142a304c63e4b2403eaf1f65fcf61aee9798c08c896ccab9569fa90926c83652589190a2ba60170fff20ccc106e0b8397fe7e8d3519cce4064ed000 diff --git a/sci-biology/bioperl-run/metadata.xml b/sci-biology/bioperl-run/metadata.xml index 5fccf50862ad..f3bb1f1db1d9 100644 --- a/sci-biology/bioperl-run/metadata.xml +++ b/sci-biology/bioperl-run/metadata.xml @@ -1,5 +1,5 @@ <?xml version="1.0" encoding="UTF-8"?> -<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<!DOCTYPE pkgmetadata SYSTEM "https://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <maintainer type="project"> <email>sci-biology@gentoo.org</email> diff --git a/sci-biology/bioperl/Manifest b/sci-biology/bioperl/Manifest index fbf3e3d16a68..c7533e05fdc8 100644 --- a/sci-biology/bioperl/Manifest +++ b/sci-biology/bioperl/Manifest @@ -1,3 +1,3 @@ DIST BioPerl-1.6.901.tar.gz 12284856 BLAKE2B 004947fde9d02355ac96f71b67a33a27d6d0163892c978ac9059e70e089fb83b473e21252c5217dfba8faaa65bc3d2eebb8826d03f29a13409e2b6d337316b42 SHA512 227387437c940da1435ed83fad6ec2168ca12a729c90dc557e84750c6474213874c23a8f23e50db4027909469627baee581faa11be6208c8e0a5453a01c7eca4 EBUILD bioperl-1.6.9.ebuild 1542 BLAKE2B 199c44bf5e2b018efa79c387c247adcade5e477199b9ac7c9dcff8fa98db413520d8365c16ebfe2e38afd799cbd3f1f07a49a24272f3afa3bb8a9aa6a326a493 SHA512 f810d4f0290cfffc3efadc3ce597de747e877c02a302de0614b82209b776dc8c631eeabc3331e9ee4cb590255c5aeb75703f48361453f779c477ed7b64ae8c03 -MISC metadata.xml 541 BLAKE2B c01f01fae7a659a708d0d3d6520e98f5bb8fd0e848fd82ae11ba7b6806f18c3ce271d76f94123f6a47c33ca88ea665689b1ec5664c114e28ec18443a87cb31de SHA512 0693aba25e02d3ad67f82c2c77f9987ae06cb6545bb58df2c57f076a22d5c2f6d15c7fdc11b0766748680d53c709c7682b53f866a4f45d7d8a875d1311277e5c +MISC metadata.xml 542 BLAKE2B 3ad1ab0c76d1fa604901646d0431a46718a0c01ce90c964e0f3855d3f487ae4a36d1550737cb5f4dc3f800d0a81329e742c9ed9b5fec346a4d53c71cf7543cae SHA512 289ed0f5f8fff5dee11c050dd37b53418ef9278071dc5700288392ae5e3e44b706692eb89ad61a31327218458926017aefa7320c8c51395c5c6400d10eb4b516 diff --git a/sci-biology/bioperl/metadata.xml b/sci-biology/bioperl/metadata.xml index 1cd5db0e9619..499b5c031ea1 100644 --- a/sci-biology/bioperl/metadata.xml +++ b/sci-biology/bioperl/metadata.xml @@ -1,5 +1,5 @@ <?xml version="1.0" encoding="UTF-8"?> -<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<!DOCTYPE pkgmetadata SYSTEM "https://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <maintainer type="project"> <email>sci-biology@gentoo.org</email> diff --git a/sci-biology/biopython/Manifest b/sci-biology/biopython/Manifest index 9b594b2d88f3..f56dc658f127 100644 --- a/sci-biology/biopython/Manifest +++ b/sci-biology/biopython/Manifest @@ -1,3 +1,3 @@ DIST biopython-1.77.tar.gz 16837021 BLAKE2B b5586f0ea3e476b11801dcc98039d5eea7b191e11d390192c0cf348018ded005fe2ad5dc9ba71c83aebc9cdde20c97244905dcc3aeb5436a97588da9f8c79c3e SHA512 6f4b03d46c591e1f49dd1e76bcc4ac5c9aaa2bf748c9dd37ffc5de5a613fbeed38f89b418c01601dd99c65b13b2e294bc8d81ffafc42a9ff1b309c84f840d0d5 EBUILD biopython-1.77.ebuild 1918 BLAKE2B 61915c04855bfa88044c7f25f36d10ab774768b8ba2df5591ce6ede34dc90a4553c0331ab85fc12139a724e6fa6a0e40e1b584892f903bcd66b038677ffd843a SHA512 13e0bd3a5bb1ef8c76d8df5d6d2d3d659b48870472c7a8a82a14e19cdae484e19bb9a3e7e2870b0e5a75c056816965e7f5e106d1c910131eefb5c206874901d1 -MISC metadata.xml 333 BLAKE2B e1ac45b48b17aaea6da7d681ed0e3c0804d9e1f2a99612b8fa6ca663b443233207ada821d48b03ce778f489b5341151aa7e4b91bc600370dff192fcf7de86364 SHA512 7b82299aa25bb2f19f5bb7cb8eb9871210a9b63c7b0b25122ff6befb3070c65e458e83585cc1f7334fd484527f2c48d04dccbcb6891ecfc412f8df577d766967 +MISC metadata.xml 334 BLAKE2B 4d97c23444fdddcca57631fa2ddf4a11cfcef0accf91db65071d520f6601c0626e290e67cbf162abdefe7a74f4b410f8366a23186fc417e1fab7e9ce157d7610 SHA512 a870bd044d0e0d4e2a0c48b50f710845c6269e038790243f1d1de65b1252fd653f0f403fc55b98946df8eb27f24dfae5c84f52fcc38c969afcbdb548ccbb7a59 diff --git a/sci-biology/biopython/metadata.xml b/sci-biology/biopython/metadata.xml index 7ffa3b15e08e..cd20d153fc2e 100644 --- a/sci-biology/biopython/metadata.xml +++ b/sci-biology/biopython/metadata.xml @@ -1,5 +1,5 @@ <?xml version="1.0" encoding="UTF-8"?> -<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<!DOCTYPE pkgmetadata SYSTEM "https://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <maintainer type="project"> <email>sci-biology@gentoo.org</email> diff --git a/sci-biology/biosql/Manifest b/sci-biology/biosql/Manifest index 584e94dfb50e..ba740f75612d 100644 --- a/sci-biology/biosql/Manifest +++ b/sci-biology/biosql/Manifest @@ -1,3 +1,3 @@ DIST biosql-1.0.1.tar.bz2 253516 BLAKE2B d2b0d6c3f03389fbcf9dfca823b02c611b63d4c1ee1356150f92bb8c14c534d988644253fd1a6ed6522b8d2d06cacf7b21d7a9e9fe7b9464704497e7f976b283 SHA512 2e1fef6ab9b4386f146910937700f9108f8ef266161b7adfbbc52c0011eebc84716637c897a01a399ff39b066ff0a5905ba3fa27e7b41f53a87baf58d5b32695 EBUILD biosql-1.0.1-r1.ebuild 989 BLAKE2B a035872d282e58e54b472e70618bb340de900e2d49c7abf4893d82160ef8dc321caa640f1e0599b6b6d2f834159642dfa1c005bc5e1837dff769b418c04f33f3 SHA512 874448ac12a4e0331ec7b7b5ce8843928f92a6b42987975380715d39f7d0fc5c0cf688c4a596963ae5b008b55367fab3db317a8d17a19230d113e4d8e142c37f -MISC metadata.xml 267 BLAKE2B 7cf386952842945148119de3263231db4d1046d5f54811f7e303ed8ec4d27cbc1960b99c92daf6f32e5b981c2fb9f50ec666be6193865d6e18541b7427a152a9 SHA512 91ab266d9ab24401bc0fec759c5b6cfcf44a3c5669fc31c7301d79770839bb5dfa0e155d949392ef06176b4a0b2c32b91b1b54b0027f972db61f0a5e54644403 +MISC metadata.xml 268 BLAKE2B a4d67334cdad8626d60e46b677ee1c83f569e5e20b3739a7664bb33be1829f8478af35e135bf734a6ff151b8543ea6c4ecafbf822cee8189f7e7096bd9698711 SHA512 59d3d8213b1a219396b74b6f4188c01e1cb4eb1c63e6792ce1e7fdb8000d1a4625919337ff77288ca7f7e07d9753f481d2381a06f554012633cd678194c980de diff --git a/sci-biology/biosql/metadata.xml b/sci-biology/biosql/metadata.xml index 959160fe46b1..ccdff086e20b 100644 --- a/sci-biology/biosql/metadata.xml +++ b/sci-biology/biosql/metadata.xml @@ -1,5 +1,5 @@ <?xml version="1.0" encoding="UTF-8"?> -<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<!DOCTYPE pkgmetadata SYSTEM "https://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <maintainer type="project"> <email>sci-biology@gentoo.org</email> diff --git a/sci-biology/blat/Manifest b/sci-biology/blat/Manifest index b4ae775226b6..671ce095ca34 100644 --- a/sci-biology/blat/Manifest +++ b/sci-biology/blat/Manifest @@ -2,4 +2,4 @@ AUX blat-34-fix-build-system.patch 5249 BLAKE2B d32fcb326cd204c847a678cabd3fc666 AUX blat-34-fno-common.patch 466 BLAKE2B 51dd1778f09e51ce1e345ae9474d3aaeb8535b739bc6d46e5d9271204b7043e1c5da0865ed3392b62d85b75c4d6c6611015042d359a113a9b0540c9ae1f6e448 SHA512 fa0b327f212137afa41d8d21717b02c77cf7e8228fe6b104af4a9a430fb0ed11a49be1ae38e8b51016ed5b6c43073c6cbbf27cd8b6f8396d39e623039d700abf DIST blatSrc34.zip 2142975 BLAKE2B 88a2da3b1551d5d50aaa507978c17cbe34de5a27efee9405829aea51b0950b748775f21e8d806470ba5ee7831fe71d6d87cd126c38727f25306a0f793543912e SHA512 67a1dc9a93d8ddee0fca7ce94096ecfffc71d4e0697afb285f4b64205e9eb62150a145375c29dd1ccb3cea8e8a7a71a817c8e73d7aba3e97616f1606b751afe8 EBUILD blat-34-r2.ebuild 841 BLAKE2B b85ced6d272519445d60bb5846a6fa135a214aaa4b5ffed12f77b5beef8be5f3f48ffe0e4835ecc8cbf937f233c0d18a15a7168149d31fb5d2eea508ac915431 SHA512 3b34227db3d38640ba5affe00c43c0512091e007dc21625310c169e9f44a412d47039160d952c873c0afb6f5b062e1186ea5eaacf71086093807b3169ba7b956 -MISC metadata.xml 267 BLAKE2B 7cf386952842945148119de3263231db4d1046d5f54811f7e303ed8ec4d27cbc1960b99c92daf6f32e5b981c2fb9f50ec666be6193865d6e18541b7427a152a9 SHA512 91ab266d9ab24401bc0fec759c5b6cfcf44a3c5669fc31c7301d79770839bb5dfa0e155d949392ef06176b4a0b2c32b91b1b54b0027f972db61f0a5e54644403 +MISC metadata.xml 268 BLAKE2B a4d67334cdad8626d60e46b677ee1c83f569e5e20b3739a7664bb33be1829f8478af35e135bf734a6ff151b8543ea6c4ecafbf822cee8189f7e7096bd9698711 SHA512 59d3d8213b1a219396b74b6f4188c01e1cb4eb1c63e6792ce1e7fdb8000d1a4625919337ff77288ca7f7e07d9753f481d2381a06f554012633cd678194c980de diff --git a/sci-biology/blat/metadata.xml b/sci-biology/blat/metadata.xml index 959160fe46b1..ccdff086e20b 100644 --- a/sci-biology/blat/metadata.xml +++ b/sci-biology/blat/metadata.xml @@ -1,5 +1,5 @@ <?xml version="1.0" encoding="UTF-8"?> -<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<!DOCTYPE pkgmetadata SYSTEM "https://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <maintainer type="project"> <email>sci-biology@gentoo.org</email> diff --git a/sci-biology/bowtie/Manifest b/sci-biology/bowtie/Manifest index c2958853f2a0..124a1a60c6c1 100644 --- a/sci-biology/bowtie/Manifest +++ b/sci-biology/bowtie/Manifest @@ -1,3 +1,3 @@ DIST bowtie2-2.4.4-source.zip 10515984 BLAKE2B be4ceb9d3155d2a9a1f580e5032251b04b89ce0c8c9c89fc3551b34fe3bd71a683362488be7aad6daef24734c6f95c19223f20e67f198f745c4432381243039c SHA512 1b5dadd7e41b90bb9b05f50bfa171fe219cfd03aa8bb6f800de4baaffeb975eef6efc4fb8b49cb0d18833f74a1741cbe1556b87388f59188e04a55dcee6a02da EBUILD bowtie-2.4.4.ebuild 1202 BLAKE2B 4ba725c1a324fcff1444451c51b0f5f3d031dc6bb1c0e20eef82de155c19d2bff504531fc8ce2821f6955cc97b0ab162ff8c28c8b651629bf2127c90e972ab96 SHA512 c3fd41634d8b32b389a196b6443d8768541afceb67ca404ade678be166af4624733fa4c2ee5ce5683db415a9fb1e70a7edeeadeee3e9d3905c09f70e512b4ffe -MISC metadata.xml 341 BLAKE2B 6128267ebf9a8b0b4b6abf9da19a57f9a1da5492a6c878a531e7c43dc139c614793c4919d1a4a99739dfee4a3e6861554b9155f46d7af60a2f998811890bb70a SHA512 02b50e247581f0454829e2aaca768cc8719ee181db276feb20c5b4ed3ab3ba820af8db491075906eeb7bb4e0941940e98c5ee81a8efae0b633881e8f14cbcd74 +MISC metadata.xml 342 BLAKE2B 7f98f1707e3f53e7c2e532427d6935c692cdcf45304701d28d245ba13b62e752d14d5c3a96925fdf5bceb87a9c291edad0ce715339a5bf92ca6de7ee839adced SHA512 b7f0359b22f70ab25737565bda08e500f6a79bf33052d39fe2013b085c3f636122d0f373430ce3f0b56f95051db9571cb6c79b6f58e30658f45ef752ec708df6 diff --git a/sci-biology/bowtie/metadata.xml b/sci-biology/bowtie/metadata.xml index f570878c86e5..c48ae535cfaf 100644 --- a/sci-biology/bowtie/metadata.xml +++ b/sci-biology/bowtie/metadata.xml @@ -1,5 +1,5 @@ <?xml version="1.0" encoding="UTF-8"?> -<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<!DOCTYPE pkgmetadata SYSTEM "https://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <maintainer type="project"> <email>sci-biology@gentoo.org</email> diff --git a/sci-biology/bwa/Manifest b/sci-biology/bwa/Manifest index 251ea4a9b645..59f332918207 100644 --- a/sci-biology/bwa/Manifest +++ b/sci-biology/bwa/Manifest @@ -2,4 +2,4 @@ AUX bwa-0.7.17-Makefile.patch 1341 BLAKE2B 21b566233ab5838174648a5316bc0c05ede4e AUX bwa-0.7.17-gcc-10.patch 228 BLAKE2B c80d2fb9f1414705881178983227d762920051597edc99cca194a041b7d4dfec4d925b872448478804fbefa6881b58851e8d1a35a24b0efbc405b72f5f31cd62 SHA512 32bb9732ab9971bf26ecdaec9d512470bc970c26d1a928edb88957a4216cad1e650f0df2b69ab0214392503bbd483eade1212ed3e799393fa076b3ecdc5d5427 DIST bwa-0.7.17.tar.gz 232593 BLAKE2B fa48aad72a47547d66c767e2e2a5aadfcfc7c77c517410812230f51a2222ee66bb04383b068036b696af0a57b04b35e97bed11e3c44793aa899a8c0807f3df5e SHA512 114e61b7cc5edcb67172d1eca7be1fa670ea33dd48b5c02c98318e254871363775c0dab327fd7ee7023200a5fedc745fa01cbe0fd9550d783f091d4df6926f48 EBUILD bwa-0.7.17.ebuild 751 BLAKE2B b46e83d917a259affadb85c333c69821af7d54070409c5119e0d10c1a3e6136fd8fb8118f18b0e1525985b21d5d61fa00ecb3988403c42a4fd02eea5513eb5f7 SHA512 fb8c1d63bcb526c37795fa315dd4bbb8ffeb2bd6634f43ac82e1352416ffddddd44e38fcd7ec0a0608fd33143176618a418cbeb5b346f12e64172f071cf00d0d -MISC metadata.xml 348 BLAKE2B f6e4a9e3beee19fa7b231fdf89cbed2f0bcb96eddb8e7be4d47b0f6f78253ad747e89f803edc5b929536c02993b654af5933c1d4470284484d83c6724b38656e SHA512 512439b23a870d55169998b035a6f9d8a10c0746c7e20d1f969a11a7b98eef297e71fc8fdf600a20f321e1f95a2c763d3e98ff4f089952eec38138ebf0291c6a +MISC metadata.xml 349 BLAKE2B e88f66d1760cab9a5dd5d12800f2f42059dc3f6b2600d2a515946d6ff02e4e64e1f07eaf82d4cf8d4aeb5cbadf10963cee55cb00a1c19295d54e1e26cb0984a0 SHA512 8a474fe6c949982b0695f5727fd9b172e2709411663bb5c8cc7171265a3ce505d8c0837bd1bc75d3a2815f754697affb7fa668bb528e491de290dd95f87a3536 diff --git a/sci-biology/bwa/metadata.xml b/sci-biology/bwa/metadata.xml index ceb43ead2a3f..d55fb9717ad3 100644 --- a/sci-biology/bwa/metadata.xml +++ b/sci-biology/bwa/metadata.xml @@ -1,5 +1,5 @@ <?xml version="1.0" encoding="UTF-8"?> -<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<!DOCTYPE pkgmetadata SYSTEM "https://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <maintainer type="project"> <email>sci-biology@gentoo.org</email> diff --git a/sci-biology/cd-hit/Manifest b/sci-biology/cd-hit/Manifest index d244031790d6..d061ecefb980 100644 --- a/sci-biology/cd-hit/Manifest +++ b/sci-biology/cd-hit/Manifest @@ -2,4 +2,4 @@ AUX cd-hit-4.6.6-fix-build-system.patch 4006 BLAKE2B 28e19d8dbcf2072c1e348c0f4d1 AUX cd-hit-4.6.6-fix-perl-shebangs.patch 4909 BLAKE2B 2bf82ee2713206d4782143fc04f2a924b742cb50ee9b1c99aab3a3f6d1265dee78009106970329146f068544caa4edf5878bd9ee3aaaf69ea8e418702ef1e069 SHA512 3ded78d991ee922761a3a7395b4d422ff29c6fe1c0657b61ad74bc6f9253c7dc82414f8d71cfffae37cac192e96ab03f711257d3091cdd0c9444202bdf5967f5 DIST cd-hit-4.6.6.tar.gz 1152570 BLAKE2B 6a7cf99be947376af19172739626b571e06936b7b0bc8c5cb52069c63e98f0949a44edf7560fa50810d2d96e310df87dcf2e3ebf5a3856ada46dcdcd3595b6c0 SHA512 8241d6674fb041559792dbbb58c12b41302d2275d3bacb1362946094b48a0b8e1236e71b5dc77d13405220b60f8253e6f996753a8b051995a72c8353d4333c51 EBUILD cd-hit-4.6.6.ebuild 997 BLAKE2B 1305388e83140df2e024bc64546b96e849a9f70095dabc29c79ab0a078dff9fd33a091d05df3f07323391e627f28877ad77f52fdf890d20cef5832df0e3053a9 SHA512 fe17e01fc04944df9b86b98dc73a4be2f14300938e3e926f56c952eddad62caf846f0051a7c3a66dbca3132f3a79a8bc21d7a43206bd6d9d784b24c94c3204b8 -MISC metadata.xml 1351 BLAKE2B e06e3ea1665bc79924542dd596c3bcbdbd4cfba8be622a8b1f9f4689fc615ca5ded5b40305f296137743ff92f44db5b0ad5aa51218ed2d93902bf12909b5e0c7 SHA512 e43009446e7dc81bd0362ceac2a7c709e24be974344ae009bead94ea8533099ebfacb10a5b3f3d5b93c241c03bbf835b0fb11d1af172eb5a18ca30436adc3cfb +MISC metadata.xml 1352 BLAKE2B e0549ee891c9d8fb014740930ac5b45817aa5b77cf5d46d48ea7e4992d9c9185b1789afc1b0cb3af66307ef4b183897c707bbc2287f1e1ccdbff0090dd06dd1f SHA512 4bd77a842ab77168c35c5d9a58452e6d1fae5d03cfc0c900ce3b3d5cc1accd2d2dd90924a495b493c69282af455d28dcd97c050fb334c5646b611ff0d63307bf diff --git a/sci-biology/cd-hit/metadata.xml b/sci-biology/cd-hit/metadata.xml index e4906ff94e3e..3bb799e0ba9e 100644 --- a/sci-biology/cd-hit/metadata.xml +++ b/sci-biology/cd-hit/metadata.xml @@ -1,5 +1,5 @@ <?xml version="1.0" encoding="UTF-8"?> -<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<!DOCTYPE pkgmetadata SYSTEM "https://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <maintainer type="project"> <email>sci-biology@gentoo.org</email> diff --git a/sci-biology/clustal-omega/Manifest b/sci-biology/clustal-omega/Manifest index e28a437f78e3..fde021267efa 100644 --- a/sci-biology/clustal-omega/Manifest +++ b/sci-biology/clustal-omega/Manifest @@ -1,3 +1,3 @@ DIST clustal-omega-1.2.4.tar.gz 1170516 BLAKE2B 0751a30a8d7bab2bac01980b84a28720e127dfeeec5b72f1826c8d9da4e84d5d9434b0f138b600155cc76f4385320913edb9bbdeb463ed757364feb3538f325b SHA512 b31514c30b412d731ee22c9020156b65a6a6cbc6fd51edc195d17b560935184bc070feeb58964c54df9eecdefb00e5a21ce859cb0ea69d92917f6bd8e93b819e EBUILD clustal-omega-1.2.4.ebuild 649 BLAKE2B c3cf4ed978a758f0f274fff4469c8ea51567f51619121b00bcaca3777ee6f7e3ca67d117437e99f839fb68aa4be6b98383a5a883ffd854f7525586017e787cde SHA512 61ce83c18a97f09dc0750a2da7179aece9c788eb2792fac799a343e219d11f11d7a60980f791313b0963a7aed720d076e55e05c6134155be07e61e18b382c6d8 -MISC metadata.xml 267 BLAKE2B 7cf386952842945148119de3263231db4d1046d5f54811f7e303ed8ec4d27cbc1960b99c92daf6f32e5b981c2fb9f50ec666be6193865d6e18541b7427a152a9 SHA512 91ab266d9ab24401bc0fec759c5b6cfcf44a3c5669fc31c7301d79770839bb5dfa0e155d949392ef06176b4a0b2c32b91b1b54b0027f972db61f0a5e54644403 +MISC metadata.xml 268 BLAKE2B a4d67334cdad8626d60e46b677ee1c83f569e5e20b3739a7664bb33be1829f8478af35e135bf734a6ff151b8543ea6c4ecafbf822cee8189f7e7096bd9698711 SHA512 59d3d8213b1a219396b74b6f4188c01e1cb4eb1c63e6792ce1e7fdb8000d1a4625919337ff77288ca7f7e07d9753f481d2381a06f554012633cd678194c980de diff --git a/sci-biology/clustal-omega/metadata.xml b/sci-biology/clustal-omega/metadata.xml index 959160fe46b1..ccdff086e20b 100644 --- a/sci-biology/clustal-omega/metadata.xml +++ b/sci-biology/clustal-omega/metadata.xml @@ -1,5 +1,5 @@ <?xml version="1.0" encoding="UTF-8"?> -<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<!DOCTYPE pkgmetadata SYSTEM "https://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <maintainer type="project"> <email>sci-biology@gentoo.org</email> diff --git a/sci-biology/clustalw-mpi/Manifest b/sci-biology/clustalw-mpi/Manifest index 23d86f7036f9..ceb17d798526 100644 --- a/sci-biology/clustalw-mpi/Manifest +++ b/sci-biology/clustalw-mpi/Manifest @@ -2,4 +2,4 @@ AUX clustalw-mpi-0.13-fno-common.patch 449 BLAKE2B e1d8e7cd34e5fea17fb883861e2cb AUX clustalw-mpi-0.13-makefile.patch 596 BLAKE2B 3d302656dfd4a4ecae645753643a9bf93c9643818e61f8ebda910eeea668bf5c5458f670e84243cb044cdad1add35a26b365f3478eb6f7ef7f98b8bc6bbf6f55 SHA512 4b0350f9ca8ce0d6e098faae5749bdc120b853dec745a07899e81bb195623affe46560d28a3c79db7af57551c9c873d91e693ee30a5c185ac4d2adb26a9d27c8 DIST clustalw-mpi-0.13.tar.gz 154911 BLAKE2B 705f62263340b0ac13895657c97e185f395910f25653bdcc20cf867732c270c65eebebe5b914367a534a5d058909d0baf307c0a3727a2095d4f21c313e83b94d SHA512 e0008accb6c07584dc5ad1b953e0c668fad43ca3a86d88dbcf50fbfa858870131e4db005cc87b46f5268cd0795e9a2ce01326d8318d66b694a92b85e6f9635df EBUILD clustalw-mpi-0.13-r3.ebuild 1012 BLAKE2B e1ae0c2237433f8826bcc66b6c3b11e8313a41ddb8201a6ffbb1300b7f9bfbb45c568e9903f9296ca97f54a9aec98199c2c9e4f942b43e89cfaff4fe982d7472 SHA512 9b5af106fa5daed7ff7c6ab49037ca82b42ce781138fa076efaf43f70b09ebfdcd45dc5e63d53a95a9414ca273260ebe5971664559001499cba8eefb80e26694 -MISC metadata.xml 487 BLAKE2B 7ca9b9cccd9bf7468703e755d4090e077a975c6463d97c612be7508ec38497d391e10fa5a50d5e76fc1f94f735b4062a4ea894d588706092166339c2046410f3 SHA512 4b7038b53d689f5a2e0f6a0b121235efb6d5c6fa9b8586107071f7820b0c2d9274a3b8b533afc84709df408751addf2b2408850542ed0083f47c7220d4bc61f5 +MISC metadata.xml 488 BLAKE2B 9a01c23476ea3e2f2ed529c74b103a96363e86e640f514f3874d68d510cff040c90bb16fa4fc3c615b3c880854c389330cb76c3732ea09dc59f79ba02fd96d90 SHA512 cdd87e3d6565f9c1bc34204a4d63aec3819564242adbfce1b55f400879514c55e69b7954f704bc30a9528542d95c6f7a901cfdf7aec686e4ff9cd36cd4442d7a diff --git a/sci-biology/clustalw-mpi/metadata.xml b/sci-biology/clustalw-mpi/metadata.xml index ffe2c4efec87..bda43acf10c1 100644 --- a/sci-biology/clustalw-mpi/metadata.xml +++ b/sci-biology/clustalw-mpi/metadata.xml @@ -1,5 +1,5 @@ <?xml version="1.0" encoding="UTF-8"?> -<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<!DOCTYPE pkgmetadata SYSTEM "https://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <maintainer type="project"> <email>sci-biology@gentoo.org</email> diff --git a/sci-biology/clustalw/Manifest b/sci-biology/clustalw/Manifest index 70b96c98971e..7972dc360812 100644 --- a/sci-biology/clustalw/Manifest +++ b/sci-biology/clustalw/Manifest @@ -3,4 +3,4 @@ DIST clustalw-2.1.tar.gz 350761 BLAKE2B 479acb42ec0b0adee8e04e99132a782c947a1261 DIST clustalw1.83.UNIX.tar.gz 166863 BLAKE2B a3b1eabad8bc736cde4655f13fa8544759b7b5c50ea97fd45ee0be45ac6c361db5ced8ad21622ac2530b57c37c77dfd67657afd2c411acbfb7ff2a3ba014637e SHA512 c0cc9ebf4c8869be819065546b499b547990342c87425fae8f921a141704343f2a518ecfc2b8bfd527061902825fc5befcb2cd080c83ba887390e48338c9dc1a EBUILD clustalw-1.83-r4.ebuild 815 BLAKE2B 9a887de5a2a1e96652d260963e13c9aca786b684ee2a9b0c02adba0b2fbfcf0f500f5edabaf4469b2e5ff13b3cf445245d59010b5f8a50e9d830d636f0f76699 SHA512 c884a8fb3029e7834299217c6db91da4f3430c738ba346dc7c3431695c235852c830151452ec534f1c1e59aaff5fbd4bb2d1030ed7779f30a675cbb30d76c218 EBUILD clustalw-2.1-r1.ebuild 489 BLAKE2B af8ab15dcb6e2fb20199c7054940eaf53bbbcc72ec1fd7c37fc0aa3f3c28e7a23c640e70eb33956367a12ecc04990a3d6b63ad2b3d8bdf35396debff35dc6da6 SHA512 ad9b200b16d55df114440a44f8d771a406e518a49ca140de106ee38b4e8afc7f0acc7ccb18d81ea90f541637013915c6e793832d26a8b4465925fa101747498c -MISC metadata.xml 267 BLAKE2B 7cf386952842945148119de3263231db4d1046d5f54811f7e303ed8ec4d27cbc1960b99c92daf6f32e5b981c2fb9f50ec666be6193865d6e18541b7427a152a9 SHA512 91ab266d9ab24401bc0fec759c5b6cfcf44a3c5669fc31c7301d79770839bb5dfa0e155d949392ef06176b4a0b2c32b91b1b54b0027f972db61f0a5e54644403 +MISC metadata.xml 268 BLAKE2B a4d67334cdad8626d60e46b677ee1c83f569e5e20b3739a7664bb33be1829f8478af35e135bf734a6ff151b8543ea6c4ecafbf822cee8189f7e7096bd9698711 SHA512 59d3d8213b1a219396b74b6f4188c01e1cb4eb1c63e6792ce1e7fdb8000d1a4625919337ff77288ca7f7e07d9753f481d2381a06f554012633cd678194c980de diff --git a/sci-biology/clustalw/metadata.xml b/sci-biology/clustalw/metadata.xml index 959160fe46b1..ccdff086e20b 100644 --- a/sci-biology/clustalw/metadata.xml +++ b/sci-biology/clustalw/metadata.xml @@ -1,5 +1,5 @@ <?xml version="1.0" encoding="UTF-8"?> -<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<!DOCTYPE pkgmetadata SYSTEM "https://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <maintainer type="project"> <email>sci-biology@gentoo.org</email> diff --git a/sci-biology/clustalx/Manifest b/sci-biology/clustalx/Manifest index 506adc0651d3..b6075e6ac694 100644 --- a/sci-biology/clustalx/Manifest +++ b/sci-biology/clustalx/Manifest @@ -2,4 +2,4 @@ AUX clustalx-2.1-qt5.patch 8173 BLAKE2B dca2d4f7531ac38510cc9c2aa788244293c43694 DIST clustalx-2.1.tar.gz 341649 BLAKE2B 43a740b278127d4745699a75479e422cc95a864bd55a9fe37eb68c0b36ae89e07848e8fdae2207ff9b3850eebc273b803df0261eefd3e7d96d8fa58c75af3adc SHA512 e8cbad783722161de6999ab01a91d555fc10db609197a8d2878f91e9d7dc998784c02d2ccb54c4936ee27b41321db6f4f37021221662f483b8b6d945b6e1c026 DIST clustalx.png.xz 74808 BLAKE2B 3e0b7ba5d0c4e1013a1ea0146460384279e7116cccde1abdd2e34de16867d83b88c0a04fbc64524e340611fdc5a5df4dbc73f10af610a43fae65c0907b7ac25d SHA512 0907710c944fc1b883c58501cd7bc2abbc5bf171495b58dbe9829d60d7c3530c210f89a5bfafc3cec03808ae50f5c9a78ce37b9175c2e37590494e115e8e343a EBUILD clustalx-2.1-r3.ebuild 1335 BLAKE2B 699de7fc342e8446cc26d4df33f4160f12a8db5296a3c7da5dbfd925d574888e9b29d6ebafa2ffe01b3f226d76294dc0757409b342bccfe03d85dbbb3e47409d SHA512 089251d547375351d37d244d52dd98b649f6e19cf985fa4f631c68aa8e59f760537d6209c84eac1a5bb2d6381931c21993dce8fd4a812efcbe80a04b3e8b4163 -MISC metadata.xml 267 BLAKE2B 7cf386952842945148119de3263231db4d1046d5f54811f7e303ed8ec4d27cbc1960b99c92daf6f32e5b981c2fb9f50ec666be6193865d6e18541b7427a152a9 SHA512 91ab266d9ab24401bc0fec759c5b6cfcf44a3c5669fc31c7301d79770839bb5dfa0e155d949392ef06176b4a0b2c32b91b1b54b0027f972db61f0a5e54644403 +MISC metadata.xml 268 BLAKE2B a4d67334cdad8626d60e46b677ee1c83f569e5e20b3739a7664bb33be1829f8478af35e135bf734a6ff151b8543ea6c4ecafbf822cee8189f7e7096bd9698711 SHA512 59d3d8213b1a219396b74b6f4188c01e1cb4eb1c63e6792ce1e7fdb8000d1a4625919337ff77288ca7f7e07d9753f481d2381a06f554012633cd678194c980de diff --git a/sci-biology/clustalx/metadata.xml b/sci-biology/clustalx/metadata.xml index 959160fe46b1..ccdff086e20b 100644 --- a/sci-biology/clustalx/metadata.xml +++ b/sci-biology/clustalx/metadata.xml @@ -1,5 +1,5 @@ <?xml version="1.0" encoding="UTF-8"?> -<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<!DOCTYPE pkgmetadata SYSTEM "https://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <maintainer type="project"> <email>sci-biology@gentoo.org</email> diff --git a/sci-biology/consed/Manifest b/sci-biology/consed/Manifest index 07e6a1839807..c13741cade0d 100644 --- a/sci-biology/consed/Manifest +++ b/sci-biology/consed/Manifest @@ -5,4 +5,4 @@ AUX consed-29-fix-qa.patch 11639 BLAKE2B 3b80fd91b60c09e69cb9fa9b8deb88393fd89f0 DIST consed-29-linux.tar.gz 36172715 BLAKE2B 6706576b404c0bccb7ed28ab6fe2dec86fdac6f7651406d3f30e35caac3e49a66b4762edace2133d2dfb776bbeb730b74797c7323deb950f2648a46c4594fe98 SHA512 63a95d84cb58009045a9d898c8b1a94f98516bed9189f624a5930338cc8f51562504257f309d945fafcc07e0811ffeea122b640789f75fbd6c94535178dab4dd DIST consed-29-sources.tar.gz 3258845 BLAKE2B 508763ff2a240047cff0a43ba4b9b9a7f9302c0a023478c6b08f86bb77fb2c12a62a9b16165fe6257fe6c86af853dabe279bd9e05632c3e112e3fb7fad2c6bd3 SHA512 fd711a65a02ef1238cca12b90fe7fa9b67da6c37d43cd105f38c7b6475fbc073c1f4d7f99703dec9d3a0a7a2a9317cb14999a114bb6f52589cb9b6e34700eb93 EBUILD consed-29.ebuild 2727 BLAKE2B 09c3d1619c7c751c1b084bcf1bc25bd87cfa23f4d83b0b6432b9229f7ecbd05c4a424522f6cc4117d571fa2ce34dbde805b4d0224a95db5af0f200e21688b1f3 SHA512 86160fe6b03dcfddc756c3f6a5c15bcbfe6a94b3002fe4deb39157adfc445a52ee557fa7732f07711a6859357c475bc31cfa535563cb91efee4511281fdef854 -MISC metadata.xml 267 BLAKE2B 7cf386952842945148119de3263231db4d1046d5f54811f7e303ed8ec4d27cbc1960b99c92daf6f32e5b981c2fb9f50ec666be6193865d6e18541b7427a152a9 SHA512 91ab266d9ab24401bc0fec759c5b6cfcf44a3c5669fc31c7301d79770839bb5dfa0e155d949392ef06176b4a0b2c32b91b1b54b0027f972db61f0a5e54644403 +MISC metadata.xml 268 BLAKE2B a4d67334cdad8626d60e46b677ee1c83f569e5e20b3739a7664bb33be1829f8478af35e135bf734a6ff151b8543ea6c4ecafbf822cee8189f7e7096bd9698711 SHA512 59d3d8213b1a219396b74b6f4188c01e1cb4eb1c63e6792ce1e7fdb8000d1a4625919337ff77288ca7f7e07d9753f481d2381a06f554012633cd678194c980de diff --git a/sci-biology/consed/metadata.xml b/sci-biology/consed/metadata.xml index 959160fe46b1..ccdff086e20b 100644 --- a/sci-biology/consed/metadata.xml +++ b/sci-biology/consed/metadata.xml @@ -1,5 +1,5 @@ <?xml version="1.0" encoding="UTF-8"?> -<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<!DOCTYPE pkgmetadata SYSTEM "https://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <maintainer type="project"> <email>sci-biology@gentoo.org</email> diff --git a/sci-biology/cutg/Manifest b/sci-biology/cutg/Manifest index dad1300c3563..3a9c7ef277ba 100644 --- a/sci-biology/cutg/Manifest +++ b/sci-biology/cutg/Manifest @@ -1,3 +1,3 @@ DIST cutg-160.tar.xz 178015420 BLAKE2B acfc65f4f152b7293cb8ec8e2bfa3c2c33c5da7bcdcae5349d13122e36c4061931195034548963cb78f6350bce88f72e4fc764f119e181f1f6278ee837b65b6e SHA512 9b72283f311fb805b7b22f59f3ca8fed2ab0af72b82247900922999792c1b112dcaca9b29b265a1e0e7b9eaf9ff846a1dc4c196fb95ddbfb3ee5175755ffb8e7 EBUILD cutg-160-r1.ebuild 1013 BLAKE2B b60896afcc643f6c0d79361839b004e641f648fdbd48ee1e697a4f6a2b4197f7dd3e752561c7e050bbfc4bd0e7577b1af04c1518bf70015e25a4b502845f602f SHA512 38fc329c36da76f23593ab61bb5a0d09d7018044d398cc014462a63e333b8437e447988acbc091afedea50386f70c9b6948deff1090855c7be74bd97c8956dff -MISC metadata.xml 601 BLAKE2B 57d7aecf5afa8d6254de9ac825e0792bcefea19b962204c62c98938d60e2aec4045dcf289b0eebfb36d8a97ddbc91f80e3329a4a87edd0659cd6afc3c976318a SHA512 ed9ad9f404db1bf7e0a1550c139f9486135313a21796d52fb468dc00557228de9433eb1bedc363e5e932eb460be696a22e4ac6fbbed0c877094ebebe13b294c0 +MISC metadata.xml 602 BLAKE2B fa4e2a4934efb0b72ffa489d8bd39b55b9fb4aa69b518a5cb8234dbaefb6ca9d5131645a508e23f97457564044e3a63d3a418f510e4dc2a3bd72bc623315d7f0 SHA512 baa307664c0b34158d243b6387ab1d2f377dca143ec5a87b6c074e5c40588c7e8f76779dde3deeb4fa920426c8754e60b23a04f3952690fa34fe3a402c6c69dd diff --git a/sci-biology/cutg/metadata.xml b/sci-biology/cutg/metadata.xml index 0f8a9b77b269..aa55dcc37fe9 100644 --- a/sci-biology/cutg/metadata.xml +++ b/sci-biology/cutg/metadata.xml @@ -1,5 +1,5 @@ <?xml version="1.0" encoding="UTF-8"?> -<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<!DOCTYPE pkgmetadata SYSTEM "https://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <maintainer type="project"> <email>sci-biology@gentoo.org</email> diff --git a/sci-biology/dialign-tx/Manifest b/sci-biology/dialign-tx/Manifest index ec6b81e67ea3..4dea0364c5c9 100644 --- a/sci-biology/dialign-tx/Manifest +++ b/sci-biology/dialign-tx/Manifest @@ -5,4 +5,4 @@ AUX dialign-tx-1.0.2-implicits.patch 780 BLAKE2B b6eb50c7eaecf6439a1d27a0173661e AUX dialign-tx-1.0.2-modernize.patch 6149 BLAKE2B f6f3044b38d4652c2bc3aa63714beb42220ac00d0ecfe68b692b7af0f6dc1d29a8d053962d324e33bf32df2b92bd0fad40b5ec352ae837f6eaba1920f73d8d90 SHA512 cf1c1200500eb3e5f159468fe52536e8ffff60de21e09bb81e585270224ac4ce93d59fe80bd5a8212a4154ad90b23ec415be11b42792440c7fd53f75762d047a DIST DIALIGN-TX_1.0.2.tar.gz 1765296 BLAKE2B 3cce811a58fcf210f42c4a783e8ebb56c66436912ff04bce270058193f0d7b21114d75e2d67829c7abfbb35814e5a16f7f952611729ab211d066403a411db94a SHA512 ff43f1f2900bdd12b7a8ba382a4d6ad68e6c2e6d7ceb1a65f0e571bb891cc2dc2661fb6ce698aaabf0e20c14565b5927ae0076a7170c8611679f936851a00c43 EBUILD dialign-tx-1.0.2-r2.ebuild 999 BLAKE2B 4fe11a5ee9d9fbb624911096f9a326dd0431bcf9f5e314ec9b551dbd1772284527e5f6ea4344a3698e337c4fbd75f631c72fb8c248d451902f9cb68b0d7d55fd SHA512 d8df0ccec568af8b0671101af9a7a88b7f52bcbe7095700fbc4e32c238bb464a9d213c90ab162195685361fb60f035ac7f8fbdf580633a32315005fd7378ab4d -MISC metadata.xml 267 BLAKE2B 7cf386952842945148119de3263231db4d1046d5f54811f7e303ed8ec4d27cbc1960b99c92daf6f32e5b981c2fb9f50ec666be6193865d6e18541b7427a152a9 SHA512 91ab266d9ab24401bc0fec759c5b6cfcf44a3c5669fc31c7301d79770839bb5dfa0e155d949392ef06176b4a0b2c32b91b1b54b0027f972db61f0a5e54644403 +MISC metadata.xml 268 BLAKE2B a4d67334cdad8626d60e46b677ee1c83f569e5e20b3739a7664bb33be1829f8478af35e135bf734a6ff151b8543ea6c4ecafbf822cee8189f7e7096bd9698711 SHA512 59d3d8213b1a219396b74b6f4188c01e1cb4eb1c63e6792ce1e7fdb8000d1a4625919337ff77288ca7f7e07d9753f481d2381a06f554012633cd678194c980de diff --git a/sci-biology/dialign-tx/metadata.xml b/sci-biology/dialign-tx/metadata.xml index 959160fe46b1..ccdff086e20b 100644 --- a/sci-biology/dialign-tx/metadata.xml +++ b/sci-biology/dialign-tx/metadata.xml @@ -1,5 +1,5 @@ <?xml version="1.0" encoding="UTF-8"?> -<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<!DOCTYPE pkgmetadata SYSTEM "https://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <maintainer type="project"> <email>sci-biology@gentoo.org</email> diff --git a/sci-biology/dialign2/Manifest b/sci-biology/dialign2/Manifest index 4b256f8e8838..137467c1ad2b 100644 --- a/sci-biology/dialign2/Manifest +++ b/sci-biology/dialign2/Manifest @@ -1,4 +1,4 @@ AUX dialign2-2.2.1-fix-build-system.patch 819 BLAKE2B c639532a8bc95744c91f07f0e672255110b31e2964bb8bfbacaa6b401dcee6a10e29199d9a19614f690a610109c2a5f0ab785b66c144373ceb4724112182cab2 SHA512 8a85911d1743c186f3dea402333e502cfd4f7807065277a2657d790ab9cf1c8d535fbb25abf994f83cdab9849d4ec203d8db8198cf10fa91996d61b63d98f807 DIST dialign-2.2.1-src.tar.gz 209015 BLAKE2B daf903b735e164879a8ceb998ca5ea0c5243927d9b88b4041633af06da7d1f608d58933ee098393e99093b7d11587a59277d9d0927214df0341a8a623b0d5608 SHA512 eb51fbc8d81e384ac19e9cc957be233287a1d81a7f020d77ab16ee6943382bd4e81099c0c9028fcff130def62cdf19de59e9a9c08ea4cb67b9d8f1939eb3bc45 EBUILD dialign2-2.2.1.ebuild 836 BLAKE2B abb98cbbfcfe09ead711558bb07b41dcd79aa706793d1aadff9eb258daac8bd42ccbef2fbb74602b0e71bc99aa863a749b0239d63c23edc78982116e4febcf0e SHA512 6714a835544683e1b135ee65aa0728e1f2943349358b4d1505c583f1beba3b4210f3fdec01625ef8bf7a92605274f47233e7ce630cd9a2996e77a098d1990e51 -MISC metadata.xml 267 BLAKE2B 7cf386952842945148119de3263231db4d1046d5f54811f7e303ed8ec4d27cbc1960b99c92daf6f32e5b981c2fb9f50ec666be6193865d6e18541b7427a152a9 SHA512 91ab266d9ab24401bc0fec759c5b6cfcf44a3c5669fc31c7301d79770839bb5dfa0e155d949392ef06176b4a0b2c32b91b1b54b0027f972db61f0a5e54644403 +MISC metadata.xml 268 BLAKE2B a4d67334cdad8626d60e46b677ee1c83f569e5e20b3739a7664bb33be1829f8478af35e135bf734a6ff151b8543ea6c4ecafbf822cee8189f7e7096bd9698711 SHA512 59d3d8213b1a219396b74b6f4188c01e1cb4eb1c63e6792ce1e7fdb8000d1a4625919337ff77288ca7f7e07d9753f481d2381a06f554012633cd678194c980de diff --git a/sci-biology/dialign2/metadata.xml b/sci-biology/dialign2/metadata.xml index 959160fe46b1..ccdff086e20b 100644 --- a/sci-biology/dialign2/metadata.xml +++ b/sci-biology/dialign2/metadata.xml @@ -1,5 +1,5 @@ <?xml version="1.0" encoding="UTF-8"?> -<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<!DOCTYPE pkgmetadata SYSTEM "https://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <maintainer type="project"> <email>sci-biology@gentoo.org</email> diff --git a/sci-biology/elph/Manifest b/sci-biology/elph/Manifest index 57245a1f486e..8ae7c859a192 100644 --- a/sci-biology/elph/Manifest +++ b/sci-biology/elph/Manifest @@ -1,4 +1,4 @@ AUX elph-1.0.1-fix-build-system.patch 1303 BLAKE2B 66103bd295fddd45f90734a49a8b673efcd91234abb4355408bca284d1d498bb98a9392b8467117e4ae034780579573a2cf26c78bef245cea8d0dac01c759322 SHA512 d39611f80cd2e67e94f3d1dd7eb1dfe59ac3b221956ab72f3951b5716825387e7d3ed04608e75abfc43ae2cbc53ace474e602ddbd93441c2da74f04516ba2ba5 DIST ELPH-1.0.1.tar.gz 113476 BLAKE2B 7c34e9f847560bf46d1bc6bbb720a0cd0afd91b29c23dac98056d2b9eea39146dda72468cad96892eb551cdfb03b224ea22b8e4cee40f19774e24fa843f55192 SHA512 a76cdcdaa1dc406fb0f1204b6a40ffc9f4c0840611b960a3d4299d447446e5bbf941abe7f70cee38f69a64862e186133fd60c1aac18b4b58d86f2ed5c4dd7d72 EBUILD elph-1.0.1-r1.ebuild 658 BLAKE2B 420e613f10a35ff0b4963488dff3bfa14a5e352d14ad8be580f1079fd986fa0bc23f5eb41d6b7eab4f25674d2893bce2bde2c26cf886883be2f6fa53c07354a6 SHA512 ae25927fb71058c7543083735082e025defb746ea89f633e0bfa99291507e3a59ccdb05f51924b62a393dbaa40e727e83e83dc6e88b3acbe8e368cd856bd4121 -MISC metadata.xml 617 BLAKE2B 6fcacf692f6d9df71fbf8437b5b700d75021ce0d9349745c95e84f971815b5fe89894bc3de8b683363e8fddff08ceaabeac517602e4e8dff6f61bbd7e00f67a9 SHA512 d1998f0590fd4c555dcea00c1865da9258ba2a98bf7a1779703aca47ae01523cad74866e90fa612d16193c3974226519d4f5768180a3ae0646af2eb9fcbd1c2c +MISC metadata.xml 618 BLAKE2B 4c12f3466489b131857dca3df864faa163d047d038aee453a02a4ab436c742e6df4f93b437643f6b4f449fcbc657dfd0d8a12b3e7ec7f90faa50ffd745dfe7bb SHA512 a19d27931ae95a971d786ff739807ce36f40a05122b1cd454f46a75f3a506b17206bf90516f9eda3aef4c1820026413aef88c3fa9bfc15516ec9c859c8b6bce7 diff --git a/sci-biology/elph/metadata.xml b/sci-biology/elph/metadata.xml index 979dde87e15d..3be54ddaef3c 100644 --- a/sci-biology/elph/metadata.xml +++ b/sci-biology/elph/metadata.xml @@ -1,5 +1,5 @@ <?xml version="1.0" encoding="UTF-8"?> -<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<!DOCTYPE pkgmetadata SYSTEM "https://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <maintainer type="project"> <email>sci-biology@gentoo.org</email> diff --git a/sci-biology/embassy-cbstools/Manifest b/sci-biology/embassy-cbstools/Manifest index a15852d6da70..562e4108ead2 100644 --- a/sci-biology/embassy-cbstools/Manifest +++ b/sci-biology/embassy-cbstools/Manifest @@ -1,4 +1,4 @@ AUX embassy-cbstools-1.0.0.650_fix-build-system.patch 2944 BLAKE2B f33ea2bc9579a7a233064e562ae76ede11fa81d9c6c972338e944028192390e797deb13514b1d02a32b1b6b55925a8eeef15f8ed11598ab487e9deb3e7a6a14d SHA512 913542383cf0dcacdf7c18ee258b6bf37fcde77b41a548089e239c9e20e2087cbec0e5244eb946b511bb76ec5930a6a44142ea172d894061bfca5e1228e29047 DIST embassy-cbstools-1.0.0.660.tar.gz 452594 BLAKE2B 68d13e14b4805af7ba1742537e6ebd621553ba6c895cd4bb13a5c1e93e72e03916ba62833f31ec35e69fa9a4ab15d9348dbfe19eb55a82f3ecd86141726e6c01 SHA512 8f16f726220a36f998d8a0f1d8aec9ec6b2db8160b15bed7bafc5a65d57a937bd91ee831ecabe2e9aaa8cecaa18d050f16439a276a882730fde3fa4937bec384 EBUILD embassy-cbstools-1.0.0.660.ebuild 349 BLAKE2B 3930b547938c8e72d8e058684c8808385c7dff42b3d6796e854da4f2401be95d652eba027c7c17e715e3a670eb4d8b31837a65d0d0dd285374ef169a8b87852f SHA512 c3354cf9907079e2870e1acf7c8ccfed1225da5c1eff6f97f144373b80ebdfdbb6d4b0fd95632e341e51edd42b15bce88bf7a10ed78a328a4907f86ba24a843d -MISC metadata.xml 347 BLAKE2B 2368d452e759747738601ae0e5e5e7181167badeaa28ed89aa8e07b55ebc9d2f1dbcd351cd5569a4548c307cfaa23b26756d88778c078685848db72dd9b094e7 SHA512 d6ddcfb5e3234d23f3c500a7234b0bc77ecdb0cf52f35f041ffdd444b8b3fefe7d0b3e89e5f7fb86da375647b7436ab1766b5bff186206e189045e38ade2056e +MISC metadata.xml 348 BLAKE2B d71aba38f248b80e63e5805f1c0f710815220774a8a514f69a708666c647f061a3f295196da119cec9b5681648a54a1915073039302586d17540296855a255df SHA512 4f8c9238704b81e38abad62bc92e67ad08fe30907277794ee5a4265f4dd8e69fb1b4cabead1fc45c48888c3dbe30496b2c7df3b1c8fa2662f87a4deef32661cd diff --git a/sci-biology/embassy-cbstools/metadata.xml b/sci-biology/embassy-cbstools/metadata.xml index d1b9a7602ec2..55784cd1ea18 100644 --- a/sci-biology/embassy-cbstools/metadata.xml +++ b/sci-biology/embassy-cbstools/metadata.xml @@ -1,5 +1,5 @@ <?xml version="1.0" encoding="UTF-8"?> -<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<!DOCTYPE pkgmetadata SYSTEM "https://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <maintainer type="project"> <email>sci-biology@gentoo.org</email> diff --git a/sci-biology/embassy-clustalomega/Manifest b/sci-biology/embassy-clustalomega/Manifest index 1ef5f7347551..b91cfce1661d 100644 --- a/sci-biology/embassy-clustalomega/Manifest +++ b/sci-biology/embassy-clustalomega/Manifest @@ -1,4 +1,4 @@ AUX embassy-clustalomega-1.1.0_fix-build-system.patch 2775 BLAKE2B 03c93a180b5bd19d74196a17e093df54a82ad70378222c04041274477f16a94bff901ff4d31b36df3597d6bb6a2e96750688a5e279d2f83b2e745cb82cd18549 SHA512 bbdf887e87e00c5f82f964ffda547ce0437795d13ecb73255901028c1e45def1a5a02decf5cd7be045985cf125669cafb00617def6cc2b5ec543aadae1dfb547 DIST embassy-clustalomega-1.1.0.660.tar.gz 618177 BLAKE2B 5d3f300a0dd825c92c3f953219b2ae8be271a7d89a1237980571b3f9a9027d6a0191ad9e61be87d1ad3334ddd56f9ff11c05d3e277683dc8cdfe511ef3739877 SHA512 fc16f9505e0300ae184e292fb1d96ce6b90eaf80298f847769466a84726d10ea58e3f4c14ed21a9e2c36d7fa533c7ad248b4995bf41c8abbd0fed1faf1fd4801 EBUILD embassy-clustalomega-1.1.0.660.ebuild 381 BLAKE2B 35ffd764e71b73b85110065818095193d822955fa9890e5e9076e09cade350980d1bcf41ee38b56b363c6dea6ca081dbf0f55ae75c474e08c7ef5555d5a330a0 SHA512 58e8112f9d645a058bc40523b6690673dfc0c0870b8b5495dd8121acd5209896a5ee3ac8c89799188635366df4a50631baeffc2d29ab5278c2e52c46e5736bfa -MISC metadata.xml 347 BLAKE2B 2368d452e759747738601ae0e5e5e7181167badeaa28ed89aa8e07b55ebc9d2f1dbcd351cd5569a4548c307cfaa23b26756d88778c078685848db72dd9b094e7 SHA512 d6ddcfb5e3234d23f3c500a7234b0bc77ecdb0cf52f35f041ffdd444b8b3fefe7d0b3e89e5f7fb86da375647b7436ab1766b5bff186206e189045e38ade2056e +MISC metadata.xml 348 BLAKE2B d71aba38f248b80e63e5805f1c0f710815220774a8a514f69a708666c647f061a3f295196da119cec9b5681648a54a1915073039302586d17540296855a255df SHA512 4f8c9238704b81e38abad62bc92e67ad08fe30907277794ee5a4265f4dd8e69fb1b4cabead1fc45c48888c3dbe30496b2c7df3b1c8fa2662f87a4deef32661cd diff --git a/sci-biology/embassy-clustalomega/metadata.xml b/sci-biology/embassy-clustalomega/metadata.xml index d1b9a7602ec2..55784cd1ea18 100644 --- a/sci-biology/embassy-clustalomega/metadata.xml +++ b/sci-biology/embassy-clustalomega/metadata.xml @@ -1,5 +1,5 @@ <?xml version="1.0" encoding="UTF-8"?> -<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<!DOCTYPE pkgmetadata SYSTEM "https://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <maintainer type="project"> <email>sci-biology@gentoo.org</email> diff --git a/sci-biology/embassy-domainatrix/Manifest b/sci-biology/embassy-domainatrix/Manifest index ebe05ee85f34..1c63220b2918 100644 --- a/sci-biology/embassy-domainatrix/Manifest +++ b/sci-biology/embassy-domainatrix/Manifest @@ -1,4 +1,4 @@ AUX embassy-domainatrix-0.1.650_fix-build-system.patch 2775 BLAKE2B cfe8ec8c3bd62ebaa789d1f3ee63b961f0ab7c41ef44c78faa7b4913945d84da1fa082dc31ebeb92b105762a25992e2d68b56988177aed9ff444743942687d43 SHA512 505a92947e8f50a2a22ea8888a326723fe47584cab4f2414d703753201daecd0e8030cfe41ff53274a0ca08a6cf9c110557e902d7a038ef7f2baffe046093e2a DIST embassy-domainatrix-0.1.660.tar.gz 474066 BLAKE2B ac5e081ac1a18d8abfbcdf687a43d4a09436c83fd54bed8c75487f8ed74852979adc96fa592df9f86c161fc8b398f1225ec44e565b470c59a5c2268898943270 SHA512 151e026445abb171a9141ae5576442307121646c66dc811320a6f73be1103203bf04d37b813e5c95ef0873be261cd474835f4dffd042f33f99d7dd4fda19be7b EBUILD embassy-domainatrix-0.1.660.ebuild 342 BLAKE2B f4c97aaa3fa9fb33a060b7973d64308bd90caa10e57497d31d3401e5d87d737a353ee5665ae0ee563f994d972e402090ef2bdbf333b4696886aadaa69136cf88 SHA512 178adf2159cc20c5e23a13b4420bf7ecd77a7b82b1047f4f499abbc9e93b1c6cce1acc6e6e27719bf767077c407de314f0d0c9e8ea93ad985944e7c3eedb452e -MISC metadata.xml 347 BLAKE2B 2368d452e759747738601ae0e5e5e7181167badeaa28ed89aa8e07b55ebc9d2f1dbcd351cd5569a4548c307cfaa23b26756d88778c078685848db72dd9b094e7 SHA512 d6ddcfb5e3234d23f3c500a7234b0bc77ecdb0cf52f35f041ffdd444b8b3fefe7d0b3e89e5f7fb86da375647b7436ab1766b5bff186206e189045e38ade2056e +MISC metadata.xml 348 BLAKE2B d71aba38f248b80e63e5805f1c0f710815220774a8a514f69a708666c647f061a3f295196da119cec9b5681648a54a1915073039302586d17540296855a255df SHA512 4f8c9238704b81e38abad62bc92e67ad08fe30907277794ee5a4265f4dd8e69fb1b4cabead1fc45c48888c3dbe30496b2c7df3b1c8fa2662f87a4deef32661cd diff --git a/sci-biology/embassy-domainatrix/metadata.xml b/sci-biology/embassy-domainatrix/metadata.xml index d1b9a7602ec2..55784cd1ea18 100644 --- a/sci-biology/embassy-domainatrix/metadata.xml +++ b/sci-biology/embassy-domainatrix/metadata.xml @@ -1,5 +1,5 @@ <?xml version="1.0" encoding="UTF-8"?> -<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<!DOCTYPE pkgmetadata SYSTEM "https://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <maintainer type="project"> <email>sci-biology@gentoo.org</email> diff --git a/sci-biology/embassy-domalign/Manifest b/sci-biology/embassy-domalign/Manifest index deb0216a9f19..cd83b75904c8 100644 --- a/sci-biology/embassy-domalign/Manifest +++ b/sci-biology/embassy-domalign/Manifest @@ -1,4 +1,4 @@ AUX embassy-domalign-0.1.650_fix-build-system.patch 2809 BLAKE2B 01ae7488b764f3d3853d8f6e4fc2f2115d381decbac3d20922d26c079d0242622f553359dab2401481be3cdf28f25495c567682c1b9d2140f3686f312cbc20f5 SHA512 09444e7ee2b263b56177275c4fe9452344720e641acb721e1630696941a3f077c9790357f9d8b775bff4f5df595973f59d1e9f4c3f66b54fa31f53db4e32ce58 DIST embassy-domalign-0.1.660.tar.gz 498669 BLAKE2B d21352b28ca046c1bfe8600a7eba641d670e232571f95f9c75b47486a63f2a2b02516191706c0688e81bc33cda90ebf88a9ce800535dce9a955ccc15e25dd20a SHA512 14e86664e9038acc60fbec92fa218e218921fb1e51cc2e482fb1760ccd9ea16041dc8a2a9f5f320fca3340b7efdc48ea9d753b048a43966fc3431acdaddc7846 EBUILD embassy-domalign-0.1.660.ebuild 340 BLAKE2B 8e42cd3a864fe7b85628901b37eba3e72b2d7efcf48ac3b7b48c65735b0983a68d47dd525ed7972e2be9c9b15723c6409de10017718e5945cd7c231153be022a SHA512 236b004af2c4a2e84eebc72f8363af05c757e0251417c8f2971ec4902a067669754980cc65f358a3295a05ea0e3c4a43a9e2b2a7e9e6010632c73ac06c281ed6 -MISC metadata.xml 347 BLAKE2B 2368d452e759747738601ae0e5e5e7181167badeaa28ed89aa8e07b55ebc9d2f1dbcd351cd5569a4548c307cfaa23b26756d88778c078685848db72dd9b094e7 SHA512 d6ddcfb5e3234d23f3c500a7234b0bc77ecdb0cf52f35f041ffdd444b8b3fefe7d0b3e89e5f7fb86da375647b7436ab1766b5bff186206e189045e38ade2056e +MISC metadata.xml 348 BLAKE2B d71aba38f248b80e63e5805f1c0f710815220774a8a514f69a708666c647f061a3f295196da119cec9b5681648a54a1915073039302586d17540296855a255df SHA512 4f8c9238704b81e38abad62bc92e67ad08fe30907277794ee5a4265f4dd8e69fb1b4cabead1fc45c48888c3dbe30496b2c7df3b1c8fa2662f87a4deef32661cd diff --git a/sci-biology/embassy-domalign/metadata.xml b/sci-biology/embassy-domalign/metadata.xml index d1b9a7602ec2..55784cd1ea18 100644 --- a/sci-biology/embassy-domalign/metadata.xml +++ b/sci-biology/embassy-domalign/metadata.xml @@ -1,5 +1,5 @@ <?xml version="1.0" encoding="UTF-8"?> -<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<!DOCTYPE pkgmetadata SYSTEM "https://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <maintainer type="project"> <email>sci-biology@gentoo.org</email> diff --git a/sci-biology/embassy-domsearch/Manifest b/sci-biology/embassy-domsearch/Manifest index a2b6ac07a746..3d8c2451a9bc 100644 --- a/sci-biology/embassy-domsearch/Manifest +++ b/sci-biology/embassy-domsearch/Manifest @@ -1,4 +1,4 @@ AUX embassy-domsearch-0.1.650_fix-build-system.patch 2806 BLAKE2B 44cfc67f34b7d4112cf0247231eb82db7433a1aecfffaf1723b4fcd5e186c0d7dd683db52bbc006027b305c2551b760c98116e5fab3eb874bd1a843f38ef2e71 SHA512 73bc497c5e7974d50a1ecd1ea537b923e5670ac1abafe9877b8fb98e4e94688fe7c77d233e4df45952da6f39013f0fa87d80791cdc79d3ed005e3f8070484144 DIST embassy-domsearch-0.1.660.tar.gz 504183 BLAKE2B 598ba359558519967d0e8d895bca453aaeffef3d8a62c3d77b6b2f321118e890ec70c3baa3dd3acc03fc9a19cc380909cf3f14e5569c4ae90d3d5e88817d6e6d SHA512 a242100dc7b4b1f4a838dbf65dffb0475b6b890c7d68efae6a74beb3d4784d031f92365a50a41c0d7ea7d1b4be5e65a298626a798970c74df0d5f85427a51589 EBUILD embassy-domsearch-0.1.660.ebuild 338 BLAKE2B 90d616ea192ce84a7cd8806425ecddbb8cb1c475900616c0aeb7f629ceb9294a05620a23df512a694c606af4e90f4968ddf0643a9800c13adde6556d6382a268 SHA512 64cb26ac31b6dee716132a3ec575e8c19d703e8ba023db382e1ade34ecda2227d2663fc18aa7ef5b5de9bedbb6ff103d2f6ac1a33c1c50e60e18523d54132351 -MISC metadata.xml 347 BLAKE2B 2368d452e759747738601ae0e5e5e7181167badeaa28ed89aa8e07b55ebc9d2f1dbcd351cd5569a4548c307cfaa23b26756d88778c078685848db72dd9b094e7 SHA512 d6ddcfb5e3234d23f3c500a7234b0bc77ecdb0cf52f35f041ffdd444b8b3fefe7d0b3e89e5f7fb86da375647b7436ab1766b5bff186206e189045e38ade2056e +MISC metadata.xml 348 BLAKE2B d71aba38f248b80e63e5805f1c0f710815220774a8a514f69a708666c647f061a3f295196da119cec9b5681648a54a1915073039302586d17540296855a255df SHA512 4f8c9238704b81e38abad62bc92e67ad08fe30907277794ee5a4265f4dd8e69fb1b4cabead1fc45c48888c3dbe30496b2c7df3b1c8fa2662f87a4deef32661cd diff --git a/sci-biology/embassy-domsearch/metadata.xml b/sci-biology/embassy-domsearch/metadata.xml index d1b9a7602ec2..55784cd1ea18 100644 --- a/sci-biology/embassy-domsearch/metadata.xml +++ b/sci-biology/embassy-domsearch/metadata.xml @@ -1,5 +1,5 @@ <?xml version="1.0" encoding="UTF-8"?> -<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<!DOCTYPE pkgmetadata SYSTEM "https://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <maintainer type="project"> <email>sci-biology@gentoo.org</email> diff --git a/sci-biology/embassy-emnu/Manifest b/sci-biology/embassy-emnu/Manifest index 9b2791335e9d..91a18d61b862 100644 --- a/sci-biology/embassy-emnu/Manifest +++ b/sci-biology/embassy-emnu/Manifest @@ -1,4 +1,4 @@ AUX embassy-emnu-1.05.650_fix-build-system.patch 3844 BLAKE2B b77be3d3917db4cdfcfce201089595a80b970575f77dffbc366c77ae27010b9a78582b035728008b20ae11b0c7c18b7b20a5fdfcd59b840f85f54a1db2fc5496 SHA512 1836ba79762f62f9e27a770a35b89ae5f2821c4d23dc93b1ab3505404105280256f1c43287471385a5be71659fbe614f5f7f97d78a4743b3b1b90b303a25f674 DIST embassy-emnu-1.05.660.tar.gz 425595 BLAKE2B ed6ab4a0572ac4b57cf0f0b75a3894b1f950f7f373a7c6797ea0c34ba1b0d0e044f2c6951aec7c084340c6b207aa4c8b386055e92ceb9fc83c920fc70e83e665 SHA512 0cb0dafd53c4fd410409430dc12353989d2c226191acace26e81b457602b6b6c60f8eb1d0d9b36ea90b2420010c1a3e887a2458e8487008a36775961e378d0dd EBUILD embassy-emnu-1.05.660.ebuild 530 BLAKE2B 063882fbbb297ea4bf5b70dd82cc7d4625f027fd87ecf3ff28e34a5d20834e20db39a8750bd3e6738e829f8c727211c1d3d47c47f2a77ffa436f925dcc8f08c0 SHA512 d4caec2280558dcbdbf7e2a5a2d3d658845781d8f05588fcedb7f7ab33fda937f1aac4e97627ae7a6744258d2384d9859a7dc0ea7af968f60f5f8739f070c296 -MISC metadata.xml 347 BLAKE2B 2368d452e759747738601ae0e5e5e7181167badeaa28ed89aa8e07b55ebc9d2f1dbcd351cd5569a4548c307cfaa23b26756d88778c078685848db72dd9b094e7 SHA512 d6ddcfb5e3234d23f3c500a7234b0bc77ecdb0cf52f35f041ffdd444b8b3fefe7d0b3e89e5f7fb86da375647b7436ab1766b5bff186206e189045e38ade2056e +MISC metadata.xml 348 BLAKE2B d71aba38f248b80e63e5805f1c0f710815220774a8a514f69a708666c647f061a3f295196da119cec9b5681648a54a1915073039302586d17540296855a255df SHA512 4f8c9238704b81e38abad62bc92e67ad08fe30907277794ee5a4265f4dd8e69fb1b4cabead1fc45c48888c3dbe30496b2c7df3b1c8fa2662f87a4deef32661cd diff --git a/sci-biology/embassy-emnu/metadata.xml b/sci-biology/embassy-emnu/metadata.xml index d1b9a7602ec2..55784cd1ea18 100644 --- a/sci-biology/embassy-emnu/metadata.xml +++ b/sci-biology/embassy-emnu/metadata.xml @@ -1,5 +1,5 @@ <?xml version="1.0" encoding="UTF-8"?> -<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<!DOCTYPE pkgmetadata SYSTEM "https://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <maintainer type="project"> <email>sci-biology@gentoo.org</email> diff --git a/sci-biology/embassy-esim4/Manifest b/sci-biology/embassy-esim4/Manifest index 0fae9cd83198..c2bff794bc86 100644 --- a/sci-biology/embassy-esim4/Manifest +++ b/sci-biology/embassy-esim4/Manifest @@ -1,4 +1,4 @@ AUX embassy-esim4-1.0.0.650_fix-build-system.patch 2944 BLAKE2B 19712a0b6fb79a37e990bfbf91471c7a08e1e22c01ae97850ed6c09f7c81272ddf841bd834b88f798598297c4df526f4cb12cb29d6db28f0d0ae1db6d05ce116 SHA512 846197536cf1f308f51ae96bb8186198f1c720ad05fb16c94e36b1aadbc3dbf50b21ddecdb2a52acc0444e0c0db980653f3d90f01b43d334d1cd995868888da8 DIST embassy-esim4-1.0.0.660.tar.gz 473261 BLAKE2B d15029b0723dd739fa9208f9b0ffd7814cbddc630ca2ff15955412f493f7983753acf82bcc8a3fc6ddfd49abe630982ead377e6941dcbff44ddc5d8ab4e7d6e5 SHA512 623b241915217ffb314e3fc4ca6aed5e1683b78b6c76f899b67c4e5d48ce83c9920d79b1c5a1508d61856c332e614020d0804b7252c535d9622f9623f29cd152 EBUILD embassy-esim4-1.0.0.660.ebuild 342 BLAKE2B 2e9c56d305a5e31d2376695e89236d7f64751a9bb922dae565e457fc44230e199e767c12208da0bae8f40be23957fcc788139a1d2e25d499e3da1ad0820e7a78 SHA512 082006d670e565b734711759cedc3ea84229c7b13ccf48a1dd823fc8918ea4e2f1d1568b1599ea2587ae0c5a4eb6e6753311df68d8a82b5b55e77dbf5733fa4c -MISC metadata.xml 347 BLAKE2B 2368d452e759747738601ae0e5e5e7181167badeaa28ed89aa8e07b55ebc9d2f1dbcd351cd5569a4548c307cfaa23b26756d88778c078685848db72dd9b094e7 SHA512 d6ddcfb5e3234d23f3c500a7234b0bc77ecdb0cf52f35f041ffdd444b8b3fefe7d0b3e89e5f7fb86da375647b7436ab1766b5bff186206e189045e38ade2056e +MISC metadata.xml 348 BLAKE2B d71aba38f248b80e63e5805f1c0f710815220774a8a514f69a708666c647f061a3f295196da119cec9b5681648a54a1915073039302586d17540296855a255df SHA512 4f8c9238704b81e38abad62bc92e67ad08fe30907277794ee5a4265f4dd8e69fb1b4cabead1fc45c48888c3dbe30496b2c7df3b1c8fa2662f87a4deef32661cd diff --git a/sci-biology/embassy-esim4/metadata.xml b/sci-biology/embassy-esim4/metadata.xml index d1b9a7602ec2..55784cd1ea18 100644 --- a/sci-biology/embassy-esim4/metadata.xml +++ b/sci-biology/embassy-esim4/metadata.xml @@ -1,5 +1,5 @@ <?xml version="1.0" encoding="UTF-8"?> -<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<!DOCTYPE pkgmetadata SYSTEM "https://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <maintainer type="project"> <email>sci-biology@gentoo.org</email> diff --git a/sci-biology/embassy-hmmer/Manifest b/sci-biology/embassy-hmmer/Manifest index 5d34609a139f..1fd74b1d1e06 100644 --- a/sci-biology/embassy-hmmer/Manifest +++ b/sci-biology/embassy-hmmer/Manifest @@ -2,4 +2,4 @@ AUX embassy-hmmer-2.3.2.650_fix-build-system.patch 2775 BLAKE2B 70ac87074b81a15a AUX embassy-hmmer-2.3.2.660-slotted-hmmer2.patch 3392 BLAKE2B 56da7becf8da8195016cb98518a19fc34394d98400dca6bb499d43c57172ed76ec81d5a9216b4a1b5e67b33520431ce87ed1327db99f3f924a36d80ff8c9e0c3 SHA512 18d1595b7cd6091917f9657310b286d2f0d1f6a61c045840b1c551b66162142997b837cc50b47a3a5fa7efec4ffa78e5b9b52804e3c4d41efeed9b4edb6e5507 DIST embassy-hmmer-2.3.2.660.tar.gz 587775 BLAKE2B ae7f7c8722bb06d4e28333837b082045e48179a596026a76c2a42f7905c7ebc42f98dd4f36915e4603322bb6d976ac4fa4e8ce6246cdee025b39ecfcb250bd10 SHA512 eb2c037fec70f4113b9ab59cc4eca9a608e8d0971a7bcc4612d60b1e28556444dd3ecdea4ff7b8f8b34711ad9f655334857e7510e89060459c81994a3abcc02a EBUILD embassy-hmmer-2.3.2.660.ebuild 498 BLAKE2B 7f319b02c38423cd0bcb6fa7f5833ec4c781c04ce52cf18db847406d5934ffb8957cb1a39e712fd3314bb78e08823b8442809c45b4c8b5d5e0c6e638451fadf7 SHA512 cff995afdb31de78ec2feb8e8b0fcc3f4e51f5214b3fd443c5b24a2f4a7dd3ac9e0a712f400734128bce52d7cc80b2fd71882716d7d1ed9007ccaa6a31710ee2 -MISC metadata.xml 347 BLAKE2B 2368d452e759747738601ae0e5e5e7181167badeaa28ed89aa8e07b55ebc9d2f1dbcd351cd5569a4548c307cfaa23b26756d88778c078685848db72dd9b094e7 SHA512 d6ddcfb5e3234d23f3c500a7234b0bc77ecdb0cf52f35f041ffdd444b8b3fefe7d0b3e89e5f7fb86da375647b7436ab1766b5bff186206e189045e38ade2056e +MISC metadata.xml 348 BLAKE2B d71aba38f248b80e63e5805f1c0f710815220774a8a514f69a708666c647f061a3f295196da119cec9b5681648a54a1915073039302586d17540296855a255df SHA512 4f8c9238704b81e38abad62bc92e67ad08fe30907277794ee5a4265f4dd8e69fb1b4cabead1fc45c48888c3dbe30496b2c7df3b1c8fa2662f87a4deef32661cd diff --git a/sci-biology/embassy-hmmer/metadata.xml b/sci-biology/embassy-hmmer/metadata.xml index d1b9a7602ec2..55784cd1ea18 100644 --- a/sci-biology/embassy-hmmer/metadata.xml +++ b/sci-biology/embassy-hmmer/metadata.xml @@ -1,5 +1,5 @@ <?xml version="1.0" encoding="UTF-8"?> -<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<!DOCTYPE pkgmetadata SYSTEM "https://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <maintainer type="project"> <email>sci-biology@gentoo.org</email> diff --git a/sci-biology/embassy-iprscan/Manifest b/sci-biology/embassy-iprscan/Manifest index 6e6ae833c3fb..bd85e005f1fc 100644 --- a/sci-biology/embassy-iprscan/Manifest +++ b/sci-biology/embassy-iprscan/Manifest @@ -1,4 +1,4 @@ AUX embassy-iprscan-4.3.1.650_fix-build-system.patch 2944 BLAKE2B 0342606ad758dc533186f455062b7019a04a0b7e8d49ca61214de09caf0518bec6b63f0dcc69652eb24bbb8704047cf0f8739cb9c8b8f2883e525176b389aa1a SHA512 98431bf56317a987083fe936f6b5d0d00c5f773bbdab5e3ee4dab6d1d6b6edb5448c4602c11f79aeed05a5642838cae7c3ab692661b18d1d15fdc9793604c856 DIST embassy-iprscan-4.3.1.660.tar.gz 406720 BLAKE2B a7e5a20b8fd1eb1ba562b5db6643542d5062b270d69a2c53aa66f5cb58f48f1d3a480ae062e53341a884eb497fff22d546df42256cdc131afb183067166fa8b6 SHA512 eed75693557f141331dfb6bec6961a8f6eab93780cad3b629d547b8635be2df6ec85e5ae0e9646d174a562a0f6d31c3c487a4dacac9efdd393a7144cd5716878 EBUILD embassy-iprscan-4.3.1.660.ebuild 360 BLAKE2B c4cc140e02c9eced5cff9976734fcbccde4a61d259cf1787a0a744f0639ea12c27d173e8badfc649f7779dd18978523dc1acf86174e1eccf697351c839fa4c9e SHA512 5e4a54bd7fb3d0522bee736678a7e8e590b07635137089487412c23c2717c6fe9b6aa1075fcf2b8c94656388fe2594c78f5c0f7c9eef91807c355809d82ca527 -MISC metadata.xml 347 BLAKE2B 2368d452e759747738601ae0e5e5e7181167badeaa28ed89aa8e07b55ebc9d2f1dbcd351cd5569a4548c307cfaa23b26756d88778c078685848db72dd9b094e7 SHA512 d6ddcfb5e3234d23f3c500a7234b0bc77ecdb0cf52f35f041ffdd444b8b3fefe7d0b3e89e5f7fb86da375647b7436ab1766b5bff186206e189045e38ade2056e +MISC metadata.xml 348 BLAKE2B d71aba38f248b80e63e5805f1c0f710815220774a8a514f69a708666c647f061a3f295196da119cec9b5681648a54a1915073039302586d17540296855a255df SHA512 4f8c9238704b81e38abad62bc92e67ad08fe30907277794ee5a4265f4dd8e69fb1b4cabead1fc45c48888c3dbe30496b2c7df3b1c8fa2662f87a4deef32661cd diff --git a/sci-biology/embassy-iprscan/metadata.xml b/sci-biology/embassy-iprscan/metadata.xml index d1b9a7602ec2..55784cd1ea18 100644 --- a/sci-biology/embassy-iprscan/metadata.xml +++ b/sci-biology/embassy-iprscan/metadata.xml @@ -1,5 +1,5 @@ <?xml version="1.0" encoding="UTF-8"?> -<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<!DOCTYPE pkgmetadata SYSTEM "https://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <maintainer type="project"> <email>sci-biology@gentoo.org</email> diff --git a/sci-biology/embassy-mse/Manifest b/sci-biology/embassy-mse/Manifest index cbb5d6766e6f..0bebb593f522 100644 --- a/sci-biology/embassy-mse/Manifest +++ b/sci-biology/embassy-mse/Manifest @@ -1,4 +1,4 @@ AUX embassy-mse-3.0.0.650_fix-build-system.patch 3968 BLAKE2B 97999702bc800bb02c0c77969e17f4ab36e6491d494ff09c3fbb20624f75db7392a5c1dbe91d977e3596855a89ccb70525c01cf7952364fb4bac4a8f403ea5d0 SHA512 8abaabce2566d42209e6863c30c6cbb392afc900d52f819e975662699651b7114257a372a50657419355d0af69f1dea80501fe2b3cf57ce1c8ca731d1b7557e4 DIST embassy-mse-3.0.0.660.tar.gz 491747 BLAKE2B 7d072458577a90fc367c5b6ed72d1d36592e42b83b3a4e31126b925ddc76f1946fba14e22b7410f66eb837f686f848bdb1033f3b62084f1423543d7605c4f6b9 SHA512 4ae34de71566464e4352ff7b3bbd19b8bf0571013f34253495cf5cc57240bac9c75192c302eb0231763db1745a7e3e79ebcdcb006e36ea4621a886b213eb96d3 EBUILD embassy-mse-3.0.0.660.ebuild 539 BLAKE2B 91a33c56fb6a4d36f5d4ea39d0c2da09790e4020113c08ee9b4f994882ae20ffae9aa2a5c02d016c5fd01dbc1c389417cc7be138404c71118ce26b8868c2501b SHA512 471381ef53268938a0b166904e070ca12ef4c541900f62205300531c70b67c419fba6b312649b25c3b7a68b493ba84eb0c9b05239b927ff029bc8e7156f92388 -MISC metadata.xml 337 BLAKE2B afa7663960962613bc67d5cedc6b06afc3722c3c04abe717c668cc25353ff799806a062ba2b051be875ea3532e7eef5ad7df74178cad2fe07123f114f140f546 SHA512 ac0a67680b4558c001eff032a46434411850c09b09ee9622d4fc3de93a45c3b382fdfec936feb58196903bf685a7000060e7d4be9c452d3806467c2eeb8b18d6 +MISC metadata.xml 338 BLAKE2B acd164074e32c1d0d2b3806e491017e350b45603515e368127fe6c1d9aefd305873d9dda8ed181da325f975043411aee91bebd2d8554c31976f618f6324e9456 SHA512 8cf0ad2755a86551c8bfdde159e2c25a1048a04f0f32c37b29a526ca29233d7eb76ad1704c70194745cf167b359f23529cbba5bfeb8003b833e6f22e0d4a333e diff --git a/sci-biology/embassy-mse/metadata.xml b/sci-biology/embassy-mse/metadata.xml index 8a0ec21fe3df..a956caede067 100644 --- a/sci-biology/embassy-mse/metadata.xml +++ b/sci-biology/embassy-mse/metadata.xml @@ -1,5 +1,5 @@ <?xml version="1.0" encoding="UTF-8"?> -<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<!DOCTYPE pkgmetadata SYSTEM "https://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <maintainer type="project"> <email>sci-biology@gentoo.org</email> diff --git a/sci-biology/embassy-phylipnew/Manifest b/sci-biology/embassy-phylipnew/Manifest index df1af5230960..f750851e5b3e 100644 --- a/sci-biology/embassy-phylipnew/Manifest +++ b/sci-biology/embassy-phylipnew/Manifest @@ -2,4 +2,4 @@ AUX embassy-phylipnew-3.69.650-fno-common.patch 16289 BLAKE2B 346f5d704be918503a AUX embassy-phylipnew-3.69.650_fix-build-system.patch 3019 BLAKE2B 39c2d7843ffac8c0a04c70d307d5651f2e53cc386c3a9b1f312d4fd53a9b9ba235a02931c4812a750da8711988e262b1c9a51a7152da20f61cd56c0d21607a89 SHA512 7d46280ffadcbc07e01d09a49a7896539a5c0c271979fcb3e1ffdf385051812adeaabec186c73e2105a710eee2fd340d89bbcbd4ecfa112879fb00cbc58c2dfe DIST embassy-phylipnew-3.69.660.tar.gz 1741298 BLAKE2B 58a2c66ffb9c447fa17462bf54d7b8e65702701d74c1f16ec6906a3acaf076ebcab30982befe6334101bc483901132069a71ffa0e2334aaee0da02a30276b7f2 SHA512 b41a31285e05a418e4fbfae7241c3658fe458e3d5d84bff472d98b7c145340a55bee1d744b5c056d0e88407074947b5f37b2182c9cb800c8a8d43dfa76d026d5 EBUILD embassy-phylipnew-3.69.660.ebuild 409 BLAKE2B 52d2e35042acda08f96cab28de1d0dd2c31c6824df7541b195644f67a8325b35b4ce34d8eab9710f0239466feeaa4c0f5f20017891812e702671710797fd0315 SHA512 7511f44570ab985948b8daf6b9267235a930d0c70fc17cff754393e3c2d9028db5360dc60642398a5fd951ae412a70d6d5610a0008137ef646040ccd1904ba27 -MISC metadata.xml 347 BLAKE2B 2368d452e759747738601ae0e5e5e7181167badeaa28ed89aa8e07b55ebc9d2f1dbcd351cd5569a4548c307cfaa23b26756d88778c078685848db72dd9b094e7 SHA512 d6ddcfb5e3234d23f3c500a7234b0bc77ecdb0cf52f35f041ffdd444b8b3fefe7d0b3e89e5f7fb86da375647b7436ab1766b5bff186206e189045e38ade2056e +MISC metadata.xml 348 BLAKE2B d71aba38f248b80e63e5805f1c0f710815220774a8a514f69a708666c647f061a3f295196da119cec9b5681648a54a1915073039302586d17540296855a255df SHA512 4f8c9238704b81e38abad62bc92e67ad08fe30907277794ee5a4265f4dd8e69fb1b4cabead1fc45c48888c3dbe30496b2c7df3b1c8fa2662f87a4deef32661cd diff --git a/sci-biology/embassy-phylipnew/metadata.xml b/sci-biology/embassy-phylipnew/metadata.xml index d1b9a7602ec2..55784cd1ea18 100644 --- a/sci-biology/embassy-phylipnew/metadata.xml +++ b/sci-biology/embassy-phylipnew/metadata.xml @@ -1,5 +1,5 @@ <?xml version="1.0" encoding="UTF-8"?> -<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<!DOCTYPE pkgmetadata SYSTEM "https://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <maintainer type="project"> <email>sci-biology@gentoo.org</email> diff --git a/sci-biology/embassy-signature/Manifest b/sci-biology/embassy-signature/Manifest index e450e4a537da..168fa527c1c5 100644 --- a/sci-biology/embassy-signature/Manifest +++ b/sci-biology/embassy-signature/Manifest @@ -1,4 +1,4 @@ AUX embassy-signature-0.1.650_fix-build-system.patch 2775 BLAKE2B ca267498e98a294546429cac0c4276fe7c3dbdfc199d151bb7fc758e805a0f7b6de25094a2f9ec00e21b52a617176a8d45d20424cfbb37276bdc4a0000fb8ed8 SHA512 5e4f72d2960f17a2c758f6bee15f9ddd317e55ae338c46f2b915beba334729d837f573833b54310284db59fa1f1b397d8981ab4b91671cc95bcea7d441820911 DIST embassy-signature-0.1.660.tar.gz 622294 BLAKE2B 8d495b164d7aa18b4bc2db14d12e3f3ef46f2d9c6d9f98e46bebd888781ee71e7ddf88dbdb37c7be52fdd1182337ea7c70cca1247489a14f652b86918e58c46a SHA512 4989693b17c29ece16f94934e1b2f5e62f31c345bc8cbac938450db0d8f5d56ae37be6090c46e96725e63621c5951f8a65461cd36d4aafb1b509f3f554b4e952 EBUILD embassy-signature-0.1.660.ebuild 334 BLAKE2B 3102c22d5f604cb3241730df137049d99fda38cd1f02a4120c58669c388c2881c6ecc9b9abbe47be05f58a8b6fe0c0fee9fc210eaaf73044aa7987de26cd609c SHA512 d1414951385d7301aa45881866f55433a37f9938e5be14de9d2056a8b87e16767c45421a0e0462c8609806afb379114578b0b3d4908008ca16a780638d8ab9e1 -MISC metadata.xml 347 BLAKE2B 2368d452e759747738601ae0e5e5e7181167badeaa28ed89aa8e07b55ebc9d2f1dbcd351cd5569a4548c307cfaa23b26756d88778c078685848db72dd9b094e7 SHA512 d6ddcfb5e3234d23f3c500a7234b0bc77ecdb0cf52f35f041ffdd444b8b3fefe7d0b3e89e5f7fb86da375647b7436ab1766b5bff186206e189045e38ade2056e +MISC metadata.xml 348 BLAKE2B d71aba38f248b80e63e5805f1c0f710815220774a8a514f69a708666c647f061a3f295196da119cec9b5681648a54a1915073039302586d17540296855a255df SHA512 4f8c9238704b81e38abad62bc92e67ad08fe30907277794ee5a4265f4dd8e69fb1b4cabead1fc45c48888c3dbe30496b2c7df3b1c8fa2662f87a4deef32661cd diff --git a/sci-biology/embassy-signature/metadata.xml b/sci-biology/embassy-signature/metadata.xml index d1b9a7602ec2..55784cd1ea18 100644 --- a/sci-biology/embassy-signature/metadata.xml +++ b/sci-biology/embassy-signature/metadata.xml @@ -1,5 +1,5 @@ <?xml version="1.0" encoding="UTF-8"?> -<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<!DOCTYPE pkgmetadata SYSTEM "https://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <maintainer type="project"> <email>sci-biology@gentoo.org</email> diff --git a/sci-biology/embassy-structure/Manifest b/sci-biology/embassy-structure/Manifest index 593fda83a0a3..05300119825b 100644 --- a/sci-biology/embassy-structure/Manifest +++ b/sci-biology/embassy-structure/Manifest @@ -1,4 +1,4 @@ AUX embassy-structure-0.1.650_fix-build-system.patch 2775 BLAKE2B 2ef40db164efb8fa5dc3bbe06f5edbd7b2dcc9249e5a58ad3ec21feca8fcabbc78e317a1ea9a7939a4947088abe315c1cc6714fda0c20449a4cd527c1c112cff SHA512 19f51e9f1bc69f0807ee7f3d6bf8d2d21563c0a21eb08bee38cc0d9e68fb0cc1b8035402933cb8e5c12626d5b6a0b7e470518c503eaa5b1d34cc7548bccd6b21 DIST embassy-structure-0.1.660.tar.gz 588118 BLAKE2B 2723eebc309c81cc94fea687819de2c76d30ce87bb7c6dac12e9964c73fd18b497a31db07d12803d87799e42063b73d406520434482bcdb29f23a14756d11750 SHA512 56fb0ed975bfd95b1fbbccaf694e0617ec23971d53bdc230eeb6ca177907e784805697193e7630e4a513f1b4ee7a1a7974136520963557c452185be4ed22b641 EBUILD embassy-structure-0.1.660.ebuild 334 BLAKE2B 53e652e9d8c396dc29f76a4142c64488918d01b73d94af8d06356440d1b1e99641941c7d6771b1d53f42448802f56592ad20f0ce8d50be32c1feafdbae1cb31f SHA512 9001c1dd9cc59c5d266b7945153b9cb0092a30654ca42d32e7ba0712231d44fa96c1d74f639f61c360a2576d224fc601ab4714c665d860f4c053b6a2dc36a978 -MISC metadata.xml 347 BLAKE2B 2368d452e759747738601ae0e5e5e7181167badeaa28ed89aa8e07b55ebc9d2f1dbcd351cd5569a4548c307cfaa23b26756d88778c078685848db72dd9b094e7 SHA512 d6ddcfb5e3234d23f3c500a7234b0bc77ecdb0cf52f35f041ffdd444b8b3fefe7d0b3e89e5f7fb86da375647b7436ab1766b5bff186206e189045e38ade2056e +MISC metadata.xml 348 BLAKE2B d71aba38f248b80e63e5805f1c0f710815220774a8a514f69a708666c647f061a3f295196da119cec9b5681648a54a1915073039302586d17540296855a255df SHA512 4f8c9238704b81e38abad62bc92e67ad08fe30907277794ee5a4265f4dd8e69fb1b4cabead1fc45c48888c3dbe30496b2c7df3b1c8fa2662f87a4deef32661cd diff --git a/sci-biology/embassy-structure/metadata.xml b/sci-biology/embassy-structure/metadata.xml index d1b9a7602ec2..55784cd1ea18 100644 --- a/sci-biology/embassy-structure/metadata.xml +++ b/sci-biology/embassy-structure/metadata.xml @@ -1,5 +1,5 @@ <?xml version="1.0" encoding="UTF-8"?> -<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<!DOCTYPE pkgmetadata SYSTEM "https://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <maintainer type="project"> <email>sci-biology@gentoo.org</email> diff --git a/sci-biology/embassy-topo/Manifest b/sci-biology/embassy-topo/Manifest index e1c6e4c988fd..20e01db138f3 100644 --- a/sci-biology/embassy-topo/Manifest +++ b/sci-biology/embassy-topo/Manifest @@ -1,4 +1,4 @@ AUX embassy-topo-2.0.650_fix-build-system.patch 2944 BLAKE2B c9535f630899346a43a993c3563e202792610c751940a2aed3d41fc633fcffb53c372c702c19104fd709dda6b6093c4897d19336028312757135ccacec3cd8af SHA512 981326c4b27a0db091494da5a2d6215dbdac31544b33601765329c7b4e817ccdcc39e795cdc14719211a8726cb7761d070e83e234e878ac7f82bd226851ad1be DIST embassy-topo-2.0.660.tar.gz 443510 BLAKE2B ba49debdfb9f13051bd32d0d14de3b446a8fde83923e6927df52fd989460c60b5d3023aeaa84d3ab920533c40607f7ba274f64827cefa611a1513f203e08316c SHA512 8ef157a61ac47680734bed3d07cfe2bcd86730998453daa704b74aad667944ad6b0cc6f7fce36be4566cb19a626f1648d5f6793ce227cf57939fcfd0d10690a8 EBUILD embassy-topo-2.0.660.ebuild 339 BLAKE2B 97a0643d61e7dd61025ee0ea1b2b0429bc843737dbed7e53ac955c60c2540a0372b1ad15f8a00d884943e7b791c4e98eb5c04a4fcb1992f031c9a40d1011860c SHA512 50f5b9a761e053206a6a3d1021e5cdbf9f1d557c300185e3d42353f593c2e653263f4a640c536fee938c74ac4924ef54eae9a9df233b32900f544f3512ce46e5 -MISC metadata.xml 347 BLAKE2B 2368d452e759747738601ae0e5e5e7181167badeaa28ed89aa8e07b55ebc9d2f1dbcd351cd5569a4548c307cfaa23b26756d88778c078685848db72dd9b094e7 SHA512 d6ddcfb5e3234d23f3c500a7234b0bc77ecdb0cf52f35f041ffdd444b8b3fefe7d0b3e89e5f7fb86da375647b7436ab1766b5bff186206e189045e38ade2056e +MISC metadata.xml 348 BLAKE2B d71aba38f248b80e63e5805f1c0f710815220774a8a514f69a708666c647f061a3f295196da119cec9b5681648a54a1915073039302586d17540296855a255df SHA512 4f8c9238704b81e38abad62bc92e67ad08fe30907277794ee5a4265f4dd8e69fb1b4cabead1fc45c48888c3dbe30496b2c7df3b1c8fa2662f87a4deef32661cd diff --git a/sci-biology/embassy-topo/metadata.xml b/sci-biology/embassy-topo/metadata.xml index d1b9a7602ec2..55784cd1ea18 100644 --- a/sci-biology/embassy-topo/metadata.xml +++ b/sci-biology/embassy-topo/metadata.xml @@ -1,5 +1,5 @@ <?xml version="1.0" encoding="UTF-8"?> -<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<!DOCTYPE pkgmetadata SYSTEM "https://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <maintainer type="project"> <email>sci-biology@gentoo.org</email> diff --git a/sci-biology/embassy-vienna/Manifest b/sci-biology/embassy-vienna/Manifest index d3e38a4ed499..a79bc4c310b6 100644 --- a/sci-biology/embassy-vienna/Manifest +++ b/sci-biology/embassy-vienna/Manifest @@ -2,4 +2,4 @@ AUX embassy-vienna-1.7.2.650-C99-inline.patch 1457 BLAKE2B 0911b395427e1564d8955 AUX embassy-vienna-1.7.2.650_fix-build-system.patch 3349 BLAKE2B c6d12bee84b5bc5bb987929a1d606c28cab1d5bb318fdf294f01569d90ae4736c818ddf3d5d2fd506fe3d012c35d320c74c0b3185540e19a03b0e7dbcac9e0d6 SHA512 4da6e09711974bf10259558f78208d207f3e07b0156488acfce788d83f05a6872246d6acf3c318195285e1d84b3788aec65d82f989c682b56129c4dfb6df8eae DIST embassy-vienna-1.7.2.660.tar.gz 873165 BLAKE2B 46e976e52ad65490237563af09e483c212a6170c8c79fac8a2f2609040ee6a4cf60c04b00159c4c33d8c2a10f6e457e412287409fc0ea5724c5687dbd65ff06c SHA512 1484ca419ebcb7776d8f92dd633d4fda1a752a73ccb5189b58f7417a5611e015e9b42cbb37b51f4d5c7a27df0d5cab2cdf1e95ebd70a8359ffc8fa1633d28103 EBUILD embassy-vienna-1.7.2.660.ebuild 397 BLAKE2B 9f190749fed69294abeec16e993515ade0b94d5c99b00a47775ac702cedb1c01d789dc9b34e54dd64ae0e3b692e7d36a267b6e3a801de64b4dd77479ed2fd1e0 SHA512 b27a9747ec96c704ad6eebf9a122dc97f9d2995f97a44195641573fabd0cd69c6ca9e5dca58a77cc525e8175230a8e86898bcc328089fc04f3cb97cc5516e8c7 -MISC metadata.xml 347 BLAKE2B 2368d452e759747738601ae0e5e5e7181167badeaa28ed89aa8e07b55ebc9d2f1dbcd351cd5569a4548c307cfaa23b26756d88778c078685848db72dd9b094e7 SHA512 d6ddcfb5e3234d23f3c500a7234b0bc77ecdb0cf52f35f041ffdd444b8b3fefe7d0b3e89e5f7fb86da375647b7436ab1766b5bff186206e189045e38ade2056e +MISC metadata.xml 348 BLAKE2B d71aba38f248b80e63e5805f1c0f710815220774a8a514f69a708666c647f061a3f295196da119cec9b5681648a54a1915073039302586d17540296855a255df SHA512 4f8c9238704b81e38abad62bc92e67ad08fe30907277794ee5a4265f4dd8e69fb1b4cabead1fc45c48888c3dbe30496b2c7df3b1c8fa2662f87a4deef32661cd diff --git a/sci-biology/embassy-vienna/metadata.xml b/sci-biology/embassy-vienna/metadata.xml index d1b9a7602ec2..55784cd1ea18 100644 --- a/sci-biology/embassy-vienna/metadata.xml +++ b/sci-biology/embassy-vienna/metadata.xml @@ -1,5 +1,5 @@ <?xml version="1.0" encoding="UTF-8"?> -<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<!DOCTYPE pkgmetadata SYSTEM "https://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <maintainer type="project"> <email>sci-biology@gentoo.org</email> diff --git a/sci-biology/embassy/Manifest b/sci-biology/embassy/Manifest index 742fc01f8c04..e3671c22a4f9 100644 --- a/sci-biology/embassy/Manifest +++ b/sci-biology/embassy/Manifest @@ -1,2 +1,2 @@ EBUILD embassy-6.6.0-r2.ebuild 929 BLAKE2B 378e0757280f2e0bc04d673892f79ce0139100790e84618697c4e55d23f4bcb193c075cca1a5ca9aa67eacb0412250be1186e3b32eeff28306358b753852e32d SHA512 1f17adca5f631bea36776135ae545411a35f3d575eb4e059bde004fa3616447ee3eb5f1b867c5c4debfc95a5d6d476b3d2c1a80b2a8bb429c3ce4db83b0f1e4d -MISC metadata.xml 347 BLAKE2B 2368d452e759747738601ae0e5e5e7181167badeaa28ed89aa8e07b55ebc9d2f1dbcd351cd5569a4548c307cfaa23b26756d88778c078685848db72dd9b094e7 SHA512 d6ddcfb5e3234d23f3c500a7234b0bc77ecdb0cf52f35f041ffdd444b8b3fefe7d0b3e89e5f7fb86da375647b7436ab1766b5bff186206e189045e38ade2056e +MISC metadata.xml 348 BLAKE2B d71aba38f248b80e63e5805f1c0f710815220774a8a514f69a708666c647f061a3f295196da119cec9b5681648a54a1915073039302586d17540296855a255df SHA512 4f8c9238704b81e38abad62bc92e67ad08fe30907277794ee5a4265f4dd8e69fb1b4cabead1fc45c48888c3dbe30496b2c7df3b1c8fa2662f87a4deef32661cd diff --git a/sci-biology/embassy/metadata.xml b/sci-biology/embassy/metadata.xml index d1b9a7602ec2..55784cd1ea18 100644 --- a/sci-biology/embassy/metadata.xml +++ b/sci-biology/embassy/metadata.xml @@ -1,5 +1,5 @@ <?xml version="1.0" encoding="UTF-8"?> -<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<!DOCTYPE pkgmetadata SYSTEM "https://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <maintainer type="project"> <email>sci-biology@gentoo.org</email> diff --git a/sci-biology/emboss/Manifest b/sci-biology/emboss/Manifest index 192e7507fed5..5ba17fa64771 100644 --- a/sci-biology/emboss/Manifest +++ b/sci-biology/emboss/Manifest @@ -2,4 +2,4 @@ AUX README.gentoo 1522 BLAKE2B 566213e78e6c74fc6c8745391fbdbc477c9d1793f74e68fb0 DIST EMBOSS-6.6.0.tar.gz 117962028 BLAKE2B 91bf3c680290bd975d2ddb5251089d7f75f8a44a26e1247e93d2c9cf2f23e6b89c4218022ba1af0c940136ff56782f40d2c4604dc756b400ae23f223da7f3cca SHA512 2d28a03381f7dc98d205aa50202fbbac02ad218fc775d86579d310296be124403623484b1907154d915f15cd32a9f8cf16ecfaa6c4a28b362e24dc8e6380b75a DIST emboss-6.6.0-patches.tar.xz 5408 BLAKE2B ec1c55c90a64b1c27645804411b44e413ae881b1637ad2b8dfcff172e15b841cc3d2807039761f8307b0b5a29ab5b1a2c840e189f326091aa9ce25317ec9cda6 SHA512 942681df428f6254c1711902f667c6e8c71babf3e9b0c73b8b7d2fbfa5e8856ce5817560280948e588f6037011ad7055a3af5b88a58fc2b14349869927c889eb EBUILD emboss-6.6.0-r1.ebuild 1827 BLAKE2B 4e8b0902b12d390abadbf5c9a9e2824a94bc5513aadb87959eb2faf245ad75246ee3080f75e2ebfb34792471e65350a3cee2a7f08837402b43d7e5608eb181d7 SHA512 e5297ce7678262a91c8749217f094a944b87eb157893542fe89fa6ffb770726959dfe8fd1a1f84aa349432a636419cf2cba6950e83bcc1a6c0156c97144b075e -MISC metadata.xml 1096 BLAKE2B 704b6e7e0e9cb07a4cb184813ede8d7410d6612b2c8626838383a383dbd44f85b7f1dbcc988634f22d06ad76fbac927b4fd8a8836191be702c4f99a26343c6ac SHA512 4964b7e46d9fc16fcc44aaf83d0bb21a5ae860300764ca50e25f51ee0affc55fd863027747eb8e0eeca3578eefecbe23cba5ce68d518960e1721047cbefa9a3d +MISC metadata.xml 1097 BLAKE2B 76363bb35212d819328fc6ef0fe303ed3819ebd3c1742039af2863ffc1fd4c7c5cff20b6451aa92b8718487ec1a7d2a2fff8236088b8bd945b1c439a4de09115 SHA512 4b1afa15e346442138361754f9ec176a36194c6b77d002f26cadf16f1ba0f57219274144e41125ef37668f5d9e892ae370cc98e6b6ee0ded83a233ace417a0ee diff --git a/sci-biology/emboss/metadata.xml b/sci-biology/emboss/metadata.xml index 7443e66b770f..e08634d4ff12 100644 --- a/sci-biology/emboss/metadata.xml +++ b/sci-biology/emboss/metadata.xml @@ -1,5 +1,5 @@ <?xml version="1.0" encoding="UTF-8"?> -<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<!DOCTYPE pkgmetadata SYSTEM "https://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <maintainer type="project"> <email>sci-biology@gentoo.org</email> diff --git a/sci-biology/eugene/Manifest b/sci-biology/eugene/Manifest index 20228b960445..ad0cf62db829 100644 --- a/sci-biology/eugene/Manifest +++ b/sci-biology/eugene/Manifest @@ -5,4 +5,4 @@ AUX eugene-4.1d-Wformat.patch 2719 BLAKE2B 6dbdcb4e9946d0245eeeca1ff23b5d52ff3b3 AUX eugene-4.1d-fix-c++14.patch 635 BLAKE2B d6e72bd7e4b80f21ebbc78cfc5f791fa23b0c22cd3414a5ecaaf50c54e1789625901bd0f9a5357f523de5dbca02d75229557d8a032f2e7cdd345e7dae3dbe19d SHA512 8ff6a8a2ee4b70b14d0fa9984c057307fe5b7d22e8a26969d82fb1ab7ee30a90cb3520ea8d3e16a59f09dfc46a3310cb43c621fabb31a39216209a4c3523e718 DIST eugene-4.1d.tar.gz 7473965 BLAKE2B 537ba871b701a5c199791809f76ea883ff77fe768e27a69b95186ef82ab32cab9b5761405a9fadfeea9f58fe88cadce83bba4b1fa6cba5f4ede2347a516d1df0 SHA512 dab37930e211b3783954f6e4a762450760201b77e0b4214f16724516d9be583d0a7ec44a2f510e73f4370e9c2dc67a425456a057fdba8f51cb72386e16a26ef5 EBUILD eugene-4.1d.ebuild 893 BLAKE2B 5aec582935c0e5e2c6ea9a14ed06a14d65c2759a3bfa1fda5fa940f1f700fc0bcf198bb65d47996afa4adc719bf9d40613bb635089e59cddea566518702d4f77 SHA512 9db8db10b469392a9a124f02dcf1272307c6c44b9734d5f101dd13092701a16f64394408200731a63a14d5ff9e2f3ca83b2391b762b312f1a4d163dffa0b0822 -MISC metadata.xml 267 BLAKE2B 7cf386952842945148119de3263231db4d1046d5f54811f7e303ed8ec4d27cbc1960b99c92daf6f32e5b981c2fb9f50ec666be6193865d6e18541b7427a152a9 SHA512 91ab266d9ab24401bc0fec759c5b6cfcf44a3c5669fc31c7301d79770839bb5dfa0e155d949392ef06176b4a0b2c32b91b1b54b0027f972db61f0a5e54644403 +MISC metadata.xml 268 BLAKE2B a4d67334cdad8626d60e46b677ee1c83f569e5e20b3739a7664bb33be1829f8478af35e135bf734a6ff151b8543ea6c4ecafbf822cee8189f7e7096bd9698711 SHA512 59d3d8213b1a219396b74b6f4188c01e1cb4eb1c63e6792ce1e7fdb8000d1a4625919337ff77288ca7f7e07d9753f481d2381a06f554012633cd678194c980de diff --git a/sci-biology/eugene/metadata.xml b/sci-biology/eugene/metadata.xml index 959160fe46b1..ccdff086e20b 100644 --- a/sci-biology/eugene/metadata.xml +++ b/sci-biology/eugene/metadata.xml @@ -1,5 +1,5 @@ <?xml version="1.0" encoding="UTF-8"?> -<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<!DOCTYPE pkgmetadata SYSTEM "https://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <maintainer type="project"> <email>sci-biology@gentoo.org</email> diff --git a/sci-biology/exonerate/Manifest b/sci-biology/exonerate/Manifest index 1ffc0cd9c93a..a265c7bd94a4 100644 --- a/sci-biology/exonerate/Manifest +++ b/sci-biology/exonerate/Manifest @@ -1,4 +1,4 @@ AUX exonerate-2.2.0-asneeded.patch 362 BLAKE2B 57bb7d7d57bf2347fc0cb20f650cd0a452bd70ed8ed46a87d132cf8d68e152438ec2c4e877129feb91748f5ca43021cc0010cf2f50b3bdb8eed60218d904eb27 SHA512 7c08fe7ee520ab7198557f5ac7f99f0bae53da77d46949d6bac78a3330fc9023a4aece085e060ad6a40303475999654dcfe5311d3a78f1d1be0d461cefbfcfb0 DIST exonerate-2.2.0.tar.gz 509870 BLAKE2B 58b12338ef7d819a8e33ab87d72afe807ca219581a8f35ae38951860915a676bb9ba34a481f685e970948d9272be3e5f28d6b63c14f4d5facf35c4be52530d3b SHA512 c0aec4df83fbf6bcd1b27242397349769211ab88d71e2d081e20cb5453a03acd805807535a69841e991cf543d99fcd458cbd22d60b21f0fc6ce813eac45b838c EBUILD exonerate-2.2.0-r2.ebuild 967 BLAKE2B 27a48f5dc4e1040f4296152ae445ba6bb2dc29132605b6cce240c40d2719d16c0c7d80103d2b9f8440fb7d5bb8fec3e8ba0385f6f87b9196b443dd14ae1a6310 SHA512 1d5be70396afabf08489501cba460bb47a7bfe9efead75226b07707ed00813f0dcd69611b75e3135444ee100ceeaf2cd492cd79ffc5f3d01e6f5d808ce84f2e1 -MISC metadata.xml 326 BLAKE2B 51316d3ba2a93eeda2dc044ff76245b49ab71781bd822dbd52e790c738e866c899b4efd47daf298a6cad7258091ee1163778fae39c7cd27cf5a64408dc559d39 SHA512 226349d3fc3368937b974630a4251d2f6ac067a92325a376c278570beca0d316c8749e7026bd6d337f7c1cf9abd9d760499e6a7d8d85f00822a10575978e8973 +MISC metadata.xml 327 BLAKE2B 6aaa3e563d3d8f980c3f42b7e5aa1f8cd5e67e5dcea0f467e6698731480ae7cb587b75516931c351f0e562ddebc4811f359f9ec9fb9c16cb93bc0842bd24d2d7 SHA512 82cd2f3b95540ef6132985b835bf482498f60495c7e4718aaae3bfb500a017bc367cd844992b6b3a3f68be276183f62c91ee517f6a72a19d058775f40a95eb0f diff --git a/sci-biology/exonerate/metadata.xml b/sci-biology/exonerate/metadata.xml index b64950792715..110611751dc3 100644 --- a/sci-biology/exonerate/metadata.xml +++ b/sci-biology/exonerate/metadata.xml @@ -1,5 +1,5 @@ <?xml version="1.0" encoding="UTF-8"?> -<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<!DOCTYPE pkgmetadata SYSTEM "https://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <maintainer type="project"> <email>sci-biology@gentoo.org</email> diff --git a/sci-biology/express/Manifest b/sci-biology/express/Manifest index 5c4f2edd0ec3..188b64bb76a6 100644 --- a/sci-biology/express/Manifest +++ b/sci-biology/express/Manifest @@ -2,4 +2,4 @@ AUX express-1.5.1-buildsystem.patch 1956 BLAKE2B 3cc9bc2a3fb8bc55444ed17984645bf AUX express-1.5.1-gcc6.patch 722 BLAKE2B d4c5972d7f3714e33ca85258a32101cd8975527aaf52846b116b75d0cfba94af9173d338d3de0e9051e844f23d6cf2e578340e0986afa9e5ee1ccc29b0781db3 SHA512 bbc7d7980bc88e241a76ad2b8a661ac8232f2cbc1a8cbf526b43905f9cdc52b57aadf8fb6bb03181b51893ac4e9d384ababb6d34582f7e24e6ef2ecc8fbfd73f DIST express-1.5.1-src.tgz 931166 BLAKE2B 5eb185e4b001f26f0dd32885b256b9fa48c89f546d67d7f8472cade69dde25375a5fc8efed5f01b615d63b641b674f7034a13f9483eb7967a6fd784a55c8878e SHA512 59cf6511a879311247c65334285ea056d571d4fd950aa6243041fa10075ff0d1ddd2afbcfe12e5f7f3e7cdd22fe37fd7f6b43ed4a8eb28d7a33d72366dc549ee EBUILD express-1.5.1.ebuild 723 BLAKE2B 2a8a1963c9604badcca713f60c14e4567f63852271bd0e3dc6eadfdf03fb33b3c4b0697d0b4d2954801a4ed589baca38308256b4ad010d575cfff3c0590d4598 SHA512 2a237c62c543634d73b8e4f9468f510635da3db8705aeb5988daeee4d2208a303787763d6691773268a95cd82a7ebce0fe625b335d789b62b9feb7077ec06177 -MISC metadata.xml 267 BLAKE2B 7cf386952842945148119de3263231db4d1046d5f54811f7e303ed8ec4d27cbc1960b99c92daf6f32e5b981c2fb9f50ec666be6193865d6e18541b7427a152a9 SHA512 91ab266d9ab24401bc0fec759c5b6cfcf44a3c5669fc31c7301d79770839bb5dfa0e155d949392ef06176b4a0b2c32b91b1b54b0027f972db61f0a5e54644403 +MISC metadata.xml 268 BLAKE2B a4d67334cdad8626d60e46b677ee1c83f569e5e20b3739a7664bb33be1829f8478af35e135bf734a6ff151b8543ea6c4ecafbf822cee8189f7e7096bd9698711 SHA512 59d3d8213b1a219396b74b6f4188c01e1cb4eb1c63e6792ce1e7fdb8000d1a4625919337ff77288ca7f7e07d9753f481d2381a06f554012633cd678194c980de diff --git a/sci-biology/express/metadata.xml b/sci-biology/express/metadata.xml index 959160fe46b1..ccdff086e20b 100644 --- a/sci-biology/express/metadata.xml +++ b/sci-biology/express/metadata.xml @@ -1,5 +1,5 @@ <?xml version="1.0" encoding="UTF-8"?> -<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<!DOCTYPE pkgmetadata SYSTEM "https://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <maintainer type="project"> <email>sci-biology@gentoo.org</email> diff --git a/sci-biology/fasta/Manifest b/sci-biology/fasta/Manifest index 9ad838facfac..a9a197a0cebd 100644 --- a/sci-biology/fasta/Manifest +++ b/sci-biology/fasta/Manifest @@ -1,4 +1,4 @@ AUX fasta-36.3.5e-ldflags.patch 2781 BLAKE2B e6d4e0984b4dadfc9d38504ab215d769084edc6c79cfe641b6b3fba8264a40add1665027295ec4afa19d26277036bfe1a5103ecdf72ef91a1139542ac8272954 SHA512 5424bb8385def72ff75701c2da153f697520cbec82f36cbed8de0e98f93d399de660e79da7700ab0ff688fd5388cf9f42a30ccc4359335ae02042bf8cbb3aae7 DIST fasta-36.3.5e.tar.gz 943763 BLAKE2B 6234d0aee76af6614e6d25ebcfbdfae080db5bc5adf611aeb6edc53ed7c6cb6cef257bf852ed39bc286527cec4175c251765ce23ea5ff39d12ff8947dba97ac6 SHA512 ddfcae36dadd7e2ed5c8c8c0bda2eed077e9f6cd55e4ebf507690671af156358e9da4e7cb1406d2b8713c326c54a9d829fc25e668b16dfa6df48d18e3a009812 EBUILD fasta-36.3.5e.ebuild 1632 BLAKE2B 6165b7f1fc3440d94b337c13c0d520e5848d14b95720a27d941594355d70233af1c9db75e30603e4ae817ba2d2f3b1f5f7711dbcf37a2881effaade2608bc175 SHA512 f4c5cf2cb35e653d14c6afc8fd56743c8f7afb6302dd6227aec04bd8cb3efa9846fe32b6078b1b3dda94359857a214ec1580a2905aacb4ea9ed5234e2667b51c -MISC metadata.xml 267 BLAKE2B 7cf386952842945148119de3263231db4d1046d5f54811f7e303ed8ec4d27cbc1960b99c92daf6f32e5b981c2fb9f50ec666be6193865d6e18541b7427a152a9 SHA512 91ab266d9ab24401bc0fec759c5b6cfcf44a3c5669fc31c7301d79770839bb5dfa0e155d949392ef06176b4a0b2c32b91b1b54b0027f972db61f0a5e54644403 +MISC metadata.xml 268 BLAKE2B a4d67334cdad8626d60e46b677ee1c83f569e5e20b3739a7664bb33be1829f8478af35e135bf734a6ff151b8543ea6c4ecafbf822cee8189f7e7096bd9698711 SHA512 59d3d8213b1a219396b74b6f4188c01e1cb4eb1c63e6792ce1e7fdb8000d1a4625919337ff77288ca7f7e07d9753f481d2381a06f554012633cd678194c980de diff --git a/sci-biology/fasta/metadata.xml b/sci-biology/fasta/metadata.xml index 959160fe46b1..ccdff086e20b 100644 --- a/sci-biology/fasta/metadata.xml +++ b/sci-biology/fasta/metadata.xml @@ -1,5 +1,5 @@ <?xml version="1.0" encoding="UTF-8"?> -<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<!DOCTYPE pkgmetadata SYSTEM "https://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <maintainer type="project"> <email>sci-biology@gentoo.org</email> diff --git a/sci-biology/fasttree/Manifest b/sci-biology/fasttree/Manifest index ebc955155315..c0f1b206ca2d 100644 --- a/sci-biology/fasttree/Manifest +++ b/sci-biology/fasttree/Manifest @@ -4,4 +4,4 @@ DIST FastTree-2.1.11.c 395543 BLAKE2B 5bea3fba66ddf077ce42c3e1791505a9fa909bb619 DIST FastTreeUPGMA-2.1.11.c 95271 BLAKE2B 1de328881f6452b9c7423c9ed381ab2eb31c4f3ee6426481a6b1089c1359627d4cbbfbea868ebeab9538f82e17f45f1bff8ec07c7370e6432bef6bae449798a8 SHA512 4d6a8e2cb28b8ee201091172a3baa59d432420839c6d2244b5fb8230ed9daa626b6bed22cb692393ca3d78b8f2d071fe18fbb4f9bdcdc47ef149c31e3f45546c DIST MOTreeComparison-2.1.11.tar.gz 13523 BLAKE2B 97638edd945412ff00e3dfcfc89ec6ea52ae8c43531d5cb680d97e9c62fcad80e861f58ec987abcd2282166dd7886101edba4875531bd9d6ac23df242e0dbd5b SHA512 24d2247650d7728942bd1d987b548cefd65a16b433a3810876613e9fd1cff223d4349ee720b3d8d10a73af220c2c9f59a24d77ad34ff009325fe9f22aa35c72b EBUILD fasttree-2.1.11.ebuild 1114 BLAKE2B 72e5dd6d6165167cb7df943d31790cfc3a2742db788665efadeb00e55a71fd2ed2367088ef520875f4aab1cae81fde9614e8f7dda405598d1016cb27666438d9 SHA512 8003b7317d8d25ff703e2cb172e49bf3d8c50228d57417813f7917225ac655845c42c4edcd6b5fb15a354992590abdbb471ef10013dd56dc40e1a04e18f41518 -MISC metadata.xml 410 BLAKE2B 92ee74c67cebb5ac4db5217355e6f01f893387d7fe0da1dd5048207149e385927f05c324d8299682b42bc7ba895e1f42a0ee5d7e9442d03d33ea3511dc704ffd SHA512 6f380e2353b1a0ff33c75cd593d2cf3e12d56c99478e7a5bdb37459b10449ae88065d265820f2a9c6d61d53a295ed1a4e18b8595e23c137c9788c658080caff0 +MISC metadata.xml 411 BLAKE2B 58fc9f12bede9ab3c412a42949c1cc601e78f148efb7db5c0bdcb765cef52e8f1f8e20e5caa95e4150166e8e2bc8a64ee5b2cdd97fa478e74feadf68ccde93a1 SHA512 8ecbfb41a74ded2a951dfded7392835232870c12bf661cc47b1749208f80bcb2bf4ed17040d37a039ec71f0ffaaeae936c7f4462c06b046e11b10c0a7d0e06ae diff --git a/sci-biology/fasttree/metadata.xml b/sci-biology/fasttree/metadata.xml index 674816fe4822..23e67193e363 100644 --- a/sci-biology/fasttree/metadata.xml +++ b/sci-biology/fasttree/metadata.xml @@ -1,5 +1,5 @@ <?xml version="1.0" encoding="UTF-8"?> -<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<!DOCTYPE pkgmetadata SYSTEM "https://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <maintainer type="project"> <email>sci-biology@gentoo.org</email> diff --git a/sci-biology/fastx_toolkit/Manifest b/sci-biology/fastx_toolkit/Manifest index 033337cdcfdd..7d285c45f56e 100644 --- a/sci-biology/fastx_toolkit/Manifest +++ b/sci-biology/fastx_toolkit/Manifest @@ -2,4 +2,4 @@ AUX fastx_toolkit-0.0.14-fix-build-system.patch 1885 BLAKE2B f97c5e847be5e746df5 AUX fastx_toolkit-0.0.14-gcc7.patch 225 BLAKE2B 72f7b80d0cdd3ade66ae3a83340e8b31d6f8f3b71901953ae8f56e856787b546700036c1331aad884175e2a4d659588ab80097244970b764092f87ffb08d1f44 SHA512 b0e679d367f50b8f29aa759c55e2d31e859b84e53da32ef92263b258bd6163d19c44b1ed68085b1a3600e8fb19cddee9cbb5019d6050da6c028cfc291ade504c DIST fastx_toolkit-0.0.14.tar.bz2 543018 BLAKE2B d61456252ada507efd4cc45ff2f0d54f7a6c55b185d41eb5f5accd7e73184b8b80b2c415b38f8e4ccd687ae715191785a89e64f790fe598ba477901c12d514a1 SHA512 e1df1486e853b3ecee71e677cd6e86246a3993174016111eb84910625dc7ec11d37aff75de7ccefad1e019e75fe72050d6529add2116b759d5056b8096286c05 EBUILD fastx_toolkit-0.0.14.ebuild 687 BLAKE2B db00581b41017886ce6c560788cb6efb3f0a45663f3cb215dfba85267c276354d418a2d036ca757f1d675af7503430b0c39fa39f9593524c7120495f432c2c38 SHA512 0254e55a40f055eb18a31a0bd0bae97e1e6c190bf73094f591cdaea15ba413d00f2f9589369eaeaa60f93f135889a1da79ae81ae32fdb765ed162bbbce152f86 -MISC metadata.xml 339 BLAKE2B 5f3ac1398bae32aa61a3024e52c0e35065f9554d4a40830c5d694594df49f395c16614848b435e3bc5b33ad7443f6076cc1953c94add034911b1f13473be1002 SHA512 a6d032fe81daa4726fcde93dc62aac141d8f0a8bae090cd3bef43c837fddc8de10ba81870c30a0e34fec0f663f8d985dd56a451ffc9fbdcfcd05c2a318221e0b +MISC metadata.xml 340 BLAKE2B 96ca4df8a89f9f978a7e0babedc427c3374f336eb145f6f89bab8469488b3b5955898eb881b311aefe640fd8148c6136e723259963a62c4eb0ad0f445c3c8650 SHA512 dacca026042185296c0069b5e249b277e21843a5d5c32bfb1c5cefcdc5aa4aa5ddd7cd4f0fdf3e65230d7c76d405bfee5831fc24df2684849424bf93ec3f16f0 diff --git a/sci-biology/fastx_toolkit/metadata.xml b/sci-biology/fastx_toolkit/metadata.xml index 880cea0165ff..85393fae8f0d 100644 --- a/sci-biology/fastx_toolkit/metadata.xml +++ b/sci-biology/fastx_toolkit/metadata.xml @@ -1,5 +1,5 @@ <?xml version="1.0" encoding="UTF-8"?> -<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<!DOCTYPE pkgmetadata SYSTEM "https://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <maintainer type="project"> <email>sci@gentoo.org</email> diff --git a/sci-biology/finchtv/Manifest b/sci-biology/finchtv/Manifest index b8708a0f2395..9fda9c5c6d0e 100644 --- a/sci-biology/finchtv/Manifest +++ b/sci-biology/finchtv/Manifest @@ -1,3 +1,3 @@ DIST finchtv_1_3_1.tar.gz 6706911 BLAKE2B 5aea60c2a107dc0d1d878b0416011f57bfcdb73b6e7c0da80be5b485ec5824aae7c610235057b74002765f5ab5e7bd250efec2a04a471b55abd046afc560ea38 SHA512 813217a6d44cbd60fff061da94f70adadcc803b77352b278246711bf1b952b592a0fdb6bfc9d74264d896cb816078e809bdc633981d4009c422f59f74aca5bc8 EBUILD finchtv-1.3.1-r3.ebuild 718 BLAKE2B 565eac2d89a9cf378309957a0a10b3aaf5b61311cec1651dd69307541cfcf067433d686fad48c340b47bc609484c475ffff1c5c5dfd6da1f89b61a7f0f4ac130 SHA512 06dd522e0ea7b6f5501b31162022d7eb9e3b75f3b7c1688a6ce5222d1726212e9f6e484a832686c3dce2676a72d20f2446c6c8c953482b63a071309e3d285dae -MISC metadata.xml 267 BLAKE2B 7cf386952842945148119de3263231db4d1046d5f54811f7e303ed8ec4d27cbc1960b99c92daf6f32e5b981c2fb9f50ec666be6193865d6e18541b7427a152a9 SHA512 91ab266d9ab24401bc0fec759c5b6cfcf44a3c5669fc31c7301d79770839bb5dfa0e155d949392ef06176b4a0b2c32b91b1b54b0027f972db61f0a5e54644403 +MISC metadata.xml 268 BLAKE2B a4d67334cdad8626d60e46b677ee1c83f569e5e20b3739a7664bb33be1829f8478af35e135bf734a6ff151b8543ea6c4ecafbf822cee8189f7e7096bd9698711 SHA512 59d3d8213b1a219396b74b6f4188c01e1cb4eb1c63e6792ce1e7fdb8000d1a4625919337ff77288ca7f7e07d9753f481d2381a06f554012633cd678194c980de diff --git a/sci-biology/finchtv/metadata.xml b/sci-biology/finchtv/metadata.xml index 959160fe46b1..ccdff086e20b 100644 --- a/sci-biology/finchtv/metadata.xml +++ b/sci-biology/finchtv/metadata.xml @@ -1,5 +1,5 @@ <?xml version="1.0" encoding="UTF-8"?> -<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<!DOCTYPE pkgmetadata SYSTEM "https://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <maintainer type="project"> <email>sci-biology@gentoo.org</email> diff --git a/sci-biology/foldingathome/Manifest b/sci-biology/foldingathome/Manifest index e31d49a66e57..f05ea2de4408 100644 --- a/sci-biology/foldingathome/Manifest +++ b/sci-biology/foldingathome/Manifest @@ -1,4 +1,4 @@ AUX 7.3/folding-conf.d 339 BLAKE2B 93a0b3672777ad737ce27694aaca547634c375e180ad3c28c3adb9cae2cb1c054ff9458ee1fe04b70fe9841ae67d41198bcecfc4826d05d5de8df2759bd80910 SHA512 6fd10dc938262c05831e68176e93a24869bb6991508bcc48ece487b701788026561d073025bd347cd77ede13ca26f6b284861f30b07becf72ea77e4db22867b3 DIST fahclient_7.6.13-64bit-release.tar.bz2 3951134 BLAKE2B 2748b7c1987d166bdda08caf5ff2f331523ff519e24768cd7e111c6d3a93f54c10c88d8adbf733230b6c51547360135dbcb272e5d43fd06d01918481601382a1 SHA512 f39f2990d78d075e1061ceaff9453b703a000770a3422965b7b8a91d1814f8804837628d8a34be5afd914228ef787f699f2488523baad295a8d9c1e3bb4f35cf EBUILD foldingathome-7.6.13-r1.ebuild 4368 BLAKE2B 987b6022e43c2a39338ec8269e3ac001f9c0667237384814183d100fa2191dd91aaf57cfa86407d3bac0e4cee7bd12e022a967d5045e6888ba57622873500d2d SHA512 5225fcec1fb2e5d29b6628a0b06ec1f9f588f74feee6282ff7ee910fb87fba29512880707219ef77e63d0c7584858f50d0a1262ee88eea624c8dedce7df5d873 -MISC metadata.xml 257 BLAKE2B c0d9bf845137c20d86333bbe5f6f7d27e5ae2edbdd6997f870a6678825b5494b8160a4dc5fba6221f252e1146c57d3237f3d7feb098a9beed9c272f57f30d708 SHA512 5be44a06c71b100dfe66effc1d12a9801f6daf2e252f74b6499528644db9b3dd00d51827a984817b78755e8d544f9c674c27c6a370c4c4414ce26a09b478b69b +MISC metadata.xml 258 BLAKE2B 51009df26b3682090e316b4cf4a3afad84001705063be6c74a28fb11bacde48b758dc280bf9d4d049c69e728d9660e737072674ad5ff8068da4f6a49f1f4e203 SHA512 05153e39b77e8b1437a0ba80b66b6bb1b4837d719765cb157b23d5425a625ddb4056422dcbf28d182e039583a0b3863e8429efe80da85a035c96f4c4788ced6d diff --git a/sci-biology/foldingathome/metadata.xml b/sci-biology/foldingathome/metadata.xml index e051c9b41035..b5b66eeee084 100644 --- a/sci-biology/foldingathome/metadata.xml +++ b/sci-biology/foldingathome/metadata.xml @@ -1,5 +1,5 @@ <?xml version="1.0" encoding="UTF-8"?> -<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<!DOCTYPE pkgmetadata SYSTEM "https://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <maintainer type="project"> <email>sci-biology@gentoo.org</email> diff --git a/sci-biology/gibbs/Manifest b/sci-biology/gibbs/Manifest index e806435c017b..2475c8e59888 100644 --- a/sci-biology/gibbs/Manifest +++ b/sci-biology/gibbs/Manifest @@ -1,4 +1,4 @@ AUX gibbs-3.1-fix-CFLAGS.patch 213 BLAKE2B 9a0f7f0412569cef1cce984f5087f7b99e16163ac6c6c3e0aad27f14cd2f7ed5bfb22f21f433f1c343a9e73899dedb00ea93467adc4cc42a3dceae41aa1e3f86 SHA512 afd0fffb891eefe8799025a032a802f398ac737900e1fac86f79964bfe493ee906c3e5f42abc5e45d3de5af80887ab25ef207a885a6ddb8b6fe0d0ab1f906046 DIST gibbs-3.1.tar.gz 563300 BLAKE2B 74b97407ccdac49d19dd2fa5fe3a5384b52a3ae871f197c1212e818fb7ce2307f2d04a91cf8a1d14c82d57b6f7266bbae849091bec9e580b8d473b595a836212 SHA512 b1ffc0d0c7debaced3c3d850eb7d2c42e13358d1e7c6ff5e6be0273446edc50bd655c52c5ae904a9054d47d7a48abd54a7684534ba7681375b657ad77fb8cb52 EBUILD gibbs-3.1.ebuild 912 BLAKE2B 29d51a769e6a477bb81da6d467a1b2befbfd2f83282184a1087de0a4a5d736a5df01f3767663141bd6282826bd4fcad5ca0ddaea916fc93e582ccd8b4a8e98b8 SHA512 975c0bd3c57a8db25324636ce8f2fd9ef9bde1de4a980ba93fbe3e7bf8362a51f06ae5b1687570d81012ef6eed6536bfde418327a045bcf54a1e1517d85d989f -MISC metadata.xml 483 BLAKE2B e5a503d65b225af960b42424b1e2e451ed0596240e15868f04c429920a7818333819abbb21b0340cd4ec9ddbcc23cc272663bc8451fd1ab11bf6d6f17e4eae2f SHA512 3f86f0f0f673f78c65187f282c0346fccab1102a01869811afd73a6070a3efa032ff9d427a57a9e8a9922cdc055a33d6bccb771eda1196d6667b3076035fd077 +MISC metadata.xml 484 BLAKE2B d9cd3734d282126d0c50a2b4ac64e5f7dc584150e47a02fad550b3b4e3102018d95c0d226967dae006523ed37da4f3b33a89e6911d237aed54af8a923c7d5f45 SHA512 9a540d968cae036719647f394219ec70184bf956d1c6e6b86e32218426800bad998619e11094ca0d80714b6bbf5b9f37c3edc1397755e0c34bc8b63a16a43655 diff --git a/sci-biology/gibbs/metadata.xml b/sci-biology/gibbs/metadata.xml index fc9e1d2b4594..a0cd7b42b3ab 100644 --- a/sci-biology/gibbs/metadata.xml +++ b/sci-biology/gibbs/metadata.xml @@ -1,5 +1,5 @@ <?xml version="1.0" encoding="UTF-8"?> -<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<!DOCTYPE pkgmetadata SYSTEM "https://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <maintainer type="project"> <email>sci-biology@gentoo.org</email> diff --git a/sci-biology/glimmer/Manifest b/sci-biology/glimmer/Manifest index ff6038c01462..2bd20ad84d7e 100644 --- a/sci-biology/glimmer/Manifest +++ b/sci-biology/glimmer/Manifest @@ -3,4 +3,4 @@ AUX glimmer-3.02b-ldflags.patch 2091 BLAKE2B f4ff77a5b16896b349dfc7dd916b350b11a AUX glimmer-3.02b-rename_extract.patch 9286 BLAKE2B ce955f8f721f8043fe2beed82b7676e6503da20bd9a4cc556e1e29fcfcd9ffdfab1a430a98ece99f13a03241771f7b393d7c7290bf1d5c6652e67bdc5905950c SHA512 b5c08ba7ac973e723aeb8bc8808f69eded90b1e59c9d14804519d1d689e820193bf71860026642b3aed049881289c651f9cfd45bc05d53d73a2e9ab891f9b342 DIST glimmer302b.tar.gz 5637975 BLAKE2B 76c0b19fe08e9ece3e930fe3e53444a2b620e565ac3c83db484294627403e34c3ab77165e4b82176282df340fe47672bf28e5694edbcea9e17a57b61a502ae11 SHA512 00d44a02a8099ceac4b4d2a1cd5d69cc2b787942bb87f612cd63edacf7e502bc9a65cdf9b9270ad789981a84c940cc01e187882d21d2c9de4dcc12b492b041a6 EBUILD glimmer-3.02b.ebuild 1676 BLAKE2B 3e81fee625fb53db07ddb9c782e0d6a73878592b276a51f741f7f46f15f0213cfccb2592a9e82b5735a4ef9a83a791d0a268de197cf9c1760d1b6f04b6bfbafe SHA512 880de5402658689993b818391a769b1f592febf98e5ba84be9fc9fc97c286287afbbae29133bb2e6c3badaac7874a0fca8f666be49f3a2e874cdf4c93c4fde05 -MISC metadata.xml 267 BLAKE2B 7cf386952842945148119de3263231db4d1046d5f54811f7e303ed8ec4d27cbc1960b99c92daf6f32e5b981c2fb9f50ec666be6193865d6e18541b7427a152a9 SHA512 91ab266d9ab24401bc0fec759c5b6cfcf44a3c5669fc31c7301d79770839bb5dfa0e155d949392ef06176b4a0b2c32b91b1b54b0027f972db61f0a5e54644403 +MISC metadata.xml 268 BLAKE2B a4d67334cdad8626d60e46b677ee1c83f569e5e20b3739a7664bb33be1829f8478af35e135bf734a6ff151b8543ea6c4ecafbf822cee8189f7e7096bd9698711 SHA512 59d3d8213b1a219396b74b6f4188c01e1cb4eb1c63e6792ce1e7fdb8000d1a4625919337ff77288ca7f7e07d9753f481d2381a06f554012633cd678194c980de diff --git a/sci-biology/glimmer/metadata.xml b/sci-biology/glimmer/metadata.xml index 959160fe46b1..ccdff086e20b 100644 --- a/sci-biology/glimmer/metadata.xml +++ b/sci-biology/glimmer/metadata.xml @@ -1,5 +1,5 @@ <?xml version="1.0" encoding="UTF-8"?> -<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<!DOCTYPE pkgmetadata SYSTEM "https://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <maintainer type="project"> <email>sci-biology@gentoo.org</email> diff --git a/sci-biology/glimmerhmm/Manifest b/sci-biology/glimmerhmm/Manifest index 4de35b164fb1..ed259a54d26d 100644 --- a/sci-biology/glimmerhmm/Manifest +++ b/sci-biology/glimmerhmm/Manifest @@ -2,4 +2,4 @@ AUX 3.0.1-gentoo.patch 4235 BLAKE2B 8263516018df83c39da08e906bcdbfb8445ef26c064a AUX glimmerhmm-3.0.1-fix-data-path.patch 512 BLAKE2B fc37954be58eaaec074fbb3ff9a8109907fc71be39365aa07e62c884a78c910d0ffcceaee907736107b56d97f0e7c9baf30f9fd71f239ede6cebe4bc9bcfb59e SHA512 0e1b65887a7a27c8d9adbf88a904ddbb4afc56e5052a6693ca57ae160bc9c6dab8589b633d364aead873fc1aaa671580bfc0deed9bde153f5069a0351244ef51 DIST GlimmerHMM-3.0.1.tar.gz 45475952 BLAKE2B 355f4e9f26c31167e0935de8012fa99a243838d0dd47e0e46ae4cb1df4eaf188a13fb365025bc4be82805c89f36f534a9907030515f96b9422340e9e966f4ea6 SHA512 15307d1982527bd83433882552cd3e12c76a65a2a119b6911a748dc801f80b1fc5732cb769a52e5c6281bdd48cf619a02edbd1b96ee40319fc620a3a7cdd82b7 EBUILD glimmerhmm-3.0.1-r1.ebuild 989 BLAKE2B 7b411464fe1fd149ee78db9f067ff9c549854cf0ee8d572df30d0d03c3081bfe66c7ad26ad3051313909a51fc0ef0ac7e6e13f0ec378bf23929d2d4267d3b764 SHA512 1a55d81a6294016b4c90c952f49810ddf0a34f5b6b299f0040775a6a7cebe94aad5730d864143d4f09457b6616032fae2da3c893f47501d7c7effe60616a7196 -MISC metadata.xml 267 BLAKE2B 7cf386952842945148119de3263231db4d1046d5f54811f7e303ed8ec4d27cbc1960b99c92daf6f32e5b981c2fb9f50ec666be6193865d6e18541b7427a152a9 SHA512 91ab266d9ab24401bc0fec759c5b6cfcf44a3c5669fc31c7301d79770839bb5dfa0e155d949392ef06176b4a0b2c32b91b1b54b0027f972db61f0a5e54644403 +MISC metadata.xml 268 BLAKE2B a4d67334cdad8626d60e46b677ee1c83f569e5e20b3739a7664bb33be1829f8478af35e135bf734a6ff151b8543ea6c4ecafbf822cee8189f7e7096bd9698711 SHA512 59d3d8213b1a219396b74b6f4188c01e1cb4eb1c63e6792ce1e7fdb8000d1a4625919337ff77288ca7f7e07d9753f481d2381a06f554012633cd678194c980de diff --git a/sci-biology/glimmerhmm/metadata.xml b/sci-biology/glimmerhmm/metadata.xml index 959160fe46b1..ccdff086e20b 100644 --- a/sci-biology/glimmerhmm/metadata.xml +++ b/sci-biology/glimmerhmm/metadata.xml @@ -1,5 +1,5 @@ <?xml version="1.0" encoding="UTF-8"?> -<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<!DOCTYPE pkgmetadata SYSTEM "https://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <maintainer type="project"> <email>sci-biology@gentoo.org</email> diff --git a/sci-biology/gmap/Manifest b/sci-biology/gmap/Manifest index 389c55c2b131..456544f259b6 100644 --- a/sci-biology/gmap/Manifest +++ b/sci-biology/gmap/Manifest @@ -1,4 +1,4 @@ AUX gmap-2020.10.27-fno-common.patch 483 BLAKE2B 61055eccbfddd694128288594056d880beaab5f8cf61774c7f745a948fff15ff7e5261c333a0f26152e6f23d8546958e497b7975c9d8150b5279076be05dd4b0 SHA512 ea3de0c56db2c4683cad8471e5f772670288d003e7be8404b8c7528af5d4624c40f390c77b35c3f435ce8459e629783b1d26e8a76f2a479aed3c22feaa78a1a0 DIST gmap-gsnap-2020-10-27.tar.gz 4480720 BLAKE2B 9f8e8bfab19c079111d42ec466dd145385d35e3fde0a809e46776ed1b62b599664f12618803ea4475b6961a053423a8794d0b77eb0b308bdfa927b5bcaa7d49c SHA512 22e59adf404f5ef524b3cd472fb3124d03c8c55aa7946b9dc3901f5070339dc765f8f1ecc7e394b69a14bf80923f7a9db8d545e45328a346996b3288115a535b EBUILD gmap-2020.10.27.ebuild 479 BLAKE2B f3363283af3980dd1d95f33d66ea0bbe54780e9d4ff0a1b0c601d545592086a27d4af2c446b500a43a20887bb0df9632e6716fccb3e925e786b007b2ddbe5302 SHA512 7db5938e76273af4063b2c84c292ad657f50d40ccff35fe391217fefcc358882d86dbc5db1fee448b7e36b0ca5a3c6aae438691838df61274df6682d1c473671 -MISC metadata.xml 267 BLAKE2B 7cf386952842945148119de3263231db4d1046d5f54811f7e303ed8ec4d27cbc1960b99c92daf6f32e5b981c2fb9f50ec666be6193865d6e18541b7427a152a9 SHA512 91ab266d9ab24401bc0fec759c5b6cfcf44a3c5669fc31c7301d79770839bb5dfa0e155d949392ef06176b4a0b2c32b91b1b54b0027f972db61f0a5e54644403 +MISC metadata.xml 268 BLAKE2B a4d67334cdad8626d60e46b677ee1c83f569e5e20b3739a7664bb33be1829f8478af35e135bf734a6ff151b8543ea6c4ecafbf822cee8189f7e7096bd9698711 SHA512 59d3d8213b1a219396b74b6f4188c01e1cb4eb1c63e6792ce1e7fdb8000d1a4625919337ff77288ca7f7e07d9753f481d2381a06f554012633cd678194c980de diff --git a/sci-biology/gmap/metadata.xml b/sci-biology/gmap/metadata.xml index 959160fe46b1..ccdff086e20b 100644 --- a/sci-biology/gmap/metadata.xml +++ b/sci-biology/gmap/metadata.xml @@ -1,5 +1,5 @@ <?xml version="1.0" encoding="UTF-8"?> -<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<!DOCTYPE pkgmetadata SYSTEM "https://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <maintainer type="project"> <email>sci-biology@gentoo.org</email> diff --git a/sci-biology/hmmer/Manifest b/sci-biology/hmmer/Manifest index 56d3862050f0..e041a677a3af 100644 --- a/sci-biology/hmmer/Manifest +++ b/sci-biology/hmmer/Manifest @@ -6,4 +6,4 @@ DIST hmmer-2.3.2.tar.gz 1024933 BLAKE2B 34fdc7b24b28d653022c80a63b2fd8376c15c961 DIST hmmer-3.1b2.tar.gz 5965253 BLAKE2B 38d1d6fb43aa814c0e3ddc551469ebd6b967f181c45df3802598f31abef10998595218167555a8862c0d2caa9118d9a7f1c22b673b6d596665f797ba903093f5 SHA512 64c8a840cb62160a1c13a20e64f42d297edb7969425d5047eefd8ee9f992d66612d62843523e8f33a2c38568ce1b0a9df23dd1d3ecf6773007f6db12d4cc4771 EBUILD hmmer-2.3.2-r4.ebuild 1655 BLAKE2B ffc67289bc761e07d60df1d87e11abcc311b1fccc1652d542b71e0914660f3ed03e4a6e540d76d2c38e0d5cb43c606496da34fcac48bb84ee08c2a4822f0c562 SHA512 f07e067a72e388ebaff6c4712173bd6e68004a778c36823bcc685c7727a81ca77b448d046f2dec599b9c760b0c45fc379971beef227d2f6d43917a13e75b6abb EBUILD hmmer-3.1_beta2.ebuild 1063 BLAKE2B a3469ebea515d16eb960fb5021ae7374b8736dbc0e0e933146f570478bf24cbfcee2eef59008126315669ab67cd70b569ddf401e07dd78b15a96e8d6b4329296 SHA512 fa75524ced910f633735ab72a1eb8d0ae0fd3ccc88dc12f98995b546fdd5084158509c8c99fe231450f5151dacc2b9477ee35090d9657401e47f8bd1dd0240b6 -MISC metadata.xml 261 BLAKE2B 3768c926bca545090342a947ba83e706a8954c51b99a5e7b3476ba5198cd326fe1c3b8efb51dfd6be1800682556b8ceea065e388981463ab32f3d687951872f3 SHA512 537da0d3aa2741ebe4442d5dd9b53409decfc9d12ca8e5af8e737c4deb2910c884207e2d441025d19469816100889f04c11038bdffd6a1a15c6217495445090a +MISC metadata.xml 262 BLAKE2B adaacf2ac22ce09f8b1b68f538773c1e2101156181ff302eca2ce1280ee5d45db4eb302a8eee1bbead5e55942443dd16ef924cfbfdc95a1658dc6a9f460468a2 SHA512 ac924b6b530d96645f173d40f7a2bf0e3abbf49048ebf7fadcea3dd553cd25504f0e68a103395de1fb59a2e5e11497dcead601be01cc6f0295ccbc4155f67e3f diff --git a/sci-biology/hmmer/metadata.xml b/sci-biology/hmmer/metadata.xml index 8417d1580d40..bdabd1d83788 100644 --- a/sci-biology/hmmer/metadata.xml +++ b/sci-biology/hmmer/metadata.xml @@ -1,5 +1,5 @@ <?xml version="1.0" encoding="UTF-8"?> -<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<!DOCTYPE pkgmetadata SYSTEM "https://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <maintainer type="project"> <email>sci-biology@gentoo.org</email> diff --git a/sci-biology/iedera/Manifest b/sci-biology/iedera/Manifest index a9c9e79f4c5a..b94ed1791e05 100644 --- a/sci-biology/iedera/Manifest +++ b/sci-biology/iedera/Manifest @@ -1,4 +1,4 @@ AUX iedera-1.05-fix-buildsystem.patch 385 BLAKE2B ee7ccb9bd08a8be617e0165a4ee6c6f899ef03e297a9839bfa1982960f0e2f132fb8a444d1bdb74c12b55a66068577dd7be127311b71d21b599a4cabe0b3c79e SHA512 7f20d78fce1ab3a9d30290675a6893a73e2935a8842e8ac8a3d4268a0ccd2a3f165ac0201b6bb13978621230f0042460e704f706d6b3e3ee9457d6a4b6417741 DIST iedera-1.05.tar.gz 129163 BLAKE2B fe499276da7571be83b847ab98bbe4878470b07fb13ee80ffb55bff1b5674b54fd4bf5e21fa34e10b8296d9c6aad298dbde79910cfa45670ea8afe047de1a979 SHA512 60d35227d5479fea693e8a3c0e629aae9e21f3c7e2be7b2f10aaddcade70cc6525fa18dea1851f73d6c1aadbb5e8776dd4a146b1a81ecfe8c910729a2300066f EBUILD iedera-1.05-r1.ebuild 490 BLAKE2B a343877f79ccc0678765b4548add19e02aa13aa8d434933e7f0218896e838c25ca668d47ab5d9fe3966eaf995f05857b8ab7b4a28bdf568fda0cef917bfd6aa1 SHA512 2d30e9a6a88e085fc1acad0d5b56eb3bf590f26208b56dc195dec84bf7c946cc5d9ae0d36c147b43b812f16c71ddccdb11db28e2c1263ee46be6dd5659ef8754 -MISC metadata.xml 267 BLAKE2B 7cf386952842945148119de3263231db4d1046d5f54811f7e303ed8ec4d27cbc1960b99c92daf6f32e5b981c2fb9f50ec666be6193865d6e18541b7427a152a9 SHA512 91ab266d9ab24401bc0fec759c5b6cfcf44a3c5669fc31c7301d79770839bb5dfa0e155d949392ef06176b4a0b2c32b91b1b54b0027f972db61f0a5e54644403 +MISC metadata.xml 268 BLAKE2B a4d67334cdad8626d60e46b677ee1c83f569e5e20b3739a7664bb33be1829f8478af35e135bf734a6ff151b8543ea6c4ecafbf822cee8189f7e7096bd9698711 SHA512 59d3d8213b1a219396b74b6f4188c01e1cb4eb1c63e6792ce1e7fdb8000d1a4625919337ff77288ca7f7e07d9753f481d2381a06f554012633cd678194c980de diff --git a/sci-biology/iedera/metadata.xml b/sci-biology/iedera/metadata.xml index 959160fe46b1..ccdff086e20b 100644 --- a/sci-biology/iedera/metadata.xml +++ b/sci-biology/iedera/metadata.xml @@ -1,5 +1,5 @@ <?xml version="1.0" encoding="UTF-8"?> -<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<!DOCTYPE pkgmetadata SYSTEM "https://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <maintainer type="project"> <email>sci-biology@gentoo.org</email> diff --git a/sci-biology/infernal/Manifest b/sci-biology/infernal/Manifest index 54dff0d8887c..9bd728080ffa 100644 --- a/sci-biology/infernal/Manifest +++ b/sci-biology/infernal/Manifest @@ -3,4 +3,4 @@ AUX infernal-1.0.2-overflows.patch 540 BLAKE2B 1336442c3d1ef8a78d5d7a345bbbc3abf AUX infernal-1.0.2-perl-5.16-2.patch 4206 BLAKE2B eb4309d31e874f395d20bded4c132fb8b811fe17b4af5c95bd56ade05e22e7bf45c08e67884ca339aa7a2e13b2ddc9bb9527cbddef9458ce8fe05b7bd4707e49 SHA512 9784f31c18f6c53b15c0454d3a41db27c3f433ac3d3030bc113e9f9e8194fb51109de5055d038a3c639b1c4142d6fd0010825df484a857c9f072f43d8cadcb44 DIST infernal-1.0.2.tar.gz 15205421 BLAKE2B 3570ae42feb96ead383c2f1c09d34b4719ae0a5ae8fa973fd02f9ea6e8935c81ab49c7db21dad2e20c1ae6ab6fb9514f12704bbf5917f15f6582effae480312f SHA512 0399be14c17f053574e95d8c5b9eaf990545795a9268e20f0940e11a8e78fc49beb4b23994e9ea427764fbb29e9b39f6da9cb1d85eb4b56d354057b48515c4af EBUILD infernal-1.0.2-r1.ebuild 886 BLAKE2B 8f82a57ed31081abb50ee798ad80f3de5b7db8dbc3a3428b150de486834fae52253d9765d27a19276cbd79daf9a522c52733caf7a1ed824064932dbae3ade282 SHA512 af5e2dd5822150faa278e4160e41696a322deec3ac97e3df0cc100a1b8cebc929c747235a051ac86afed0269812f10dfb005160a56b49703aa67376064c49ad1 -MISC metadata.xml 267 BLAKE2B 7cf386952842945148119de3263231db4d1046d5f54811f7e303ed8ec4d27cbc1960b99c92daf6f32e5b981c2fb9f50ec666be6193865d6e18541b7427a152a9 SHA512 91ab266d9ab24401bc0fec759c5b6cfcf44a3c5669fc31c7301d79770839bb5dfa0e155d949392ef06176b4a0b2c32b91b1b54b0027f972db61f0a5e54644403 +MISC metadata.xml 268 BLAKE2B a4d67334cdad8626d60e46b677ee1c83f569e5e20b3739a7664bb33be1829f8478af35e135bf734a6ff151b8543ea6c4ecafbf822cee8189f7e7096bd9698711 SHA512 59d3d8213b1a219396b74b6f4188c01e1cb4eb1c63e6792ce1e7fdb8000d1a4625919337ff77288ca7f7e07d9753f481d2381a06f554012633cd678194c980de diff --git a/sci-biology/infernal/metadata.xml b/sci-biology/infernal/metadata.xml index 959160fe46b1..ccdff086e20b 100644 --- a/sci-biology/infernal/metadata.xml +++ b/sci-biology/infernal/metadata.xml @@ -1,5 +1,5 @@ <?xml version="1.0" encoding="UTF-8"?> -<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<!DOCTYPE pkgmetadata SYSTEM "https://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <maintainer type="project"> <email>sci-biology@gentoo.org</email> diff --git a/sci-biology/iqpnni/Manifest b/sci-biology/iqpnni/Manifest index fecf8b2d25ca..f35d0da4a9a7 100644 --- a/sci-biology/iqpnni/Manifest +++ b/sci-biology/iqpnni/Manifest @@ -1,4 +1,4 @@ AUX iqpnni-3.3.2-cpp14.patch 1240 BLAKE2B e45efc553f7b0779c5b63639363f2040883f9568cc4bb36fcea8945d8d9855fb57801d8244185f9109781187ee2ea3edf111d2e16240c8f1834042e37ba6b150 SHA512 64cba6133a64fdceff3c7c5ae7f2108e7115718609122fa4b647a6b48cd966774c20e2d9cbb4e8c4c1377de94bd57e07ef40b25692c4ee6d2282f8d4e04ddb78 DIST iqpnni-3.3.2.tar.gz 646603 BLAKE2B 9e4b281b148518b367d9aa7f1cfcc76f032657ac8ae480b84276c16d05afe64845ebfcea33d0325cfb1048d06713a5eb7ed4d9993abed4b739a700e57b849d33 SHA512 6e603117b746956ad0c3b140968abf2b3b3065a18dc78cee4975f1d2e7971334fdde15e2e8d2fd7435b9490aaaffaf17a38f72a3897c951f493d866e21d94156 EBUILD iqpnni-3.3.2-r1.ebuild 582 BLAKE2B e25b9846e1402d50670d6d0874dc7fcf38d61a63340924fc0709f1e973dece08908f6de1a5c79e8ade5d9655e397e41bfa2311d5805040eaf89e72aed3bb01e6 SHA512 ffaf3eb0c9384c52859bb598247850fa6b38dff9a1b75220b9596a10c5af1dd506edd66af0051cf7799003569665c7ec7c6dda02554e0757c57961988bf4afc2 -MISC metadata.xml 267 BLAKE2B 7cf386952842945148119de3263231db4d1046d5f54811f7e303ed8ec4d27cbc1960b99c92daf6f32e5b981c2fb9f50ec666be6193865d6e18541b7427a152a9 SHA512 91ab266d9ab24401bc0fec759c5b6cfcf44a3c5669fc31c7301d79770839bb5dfa0e155d949392ef06176b4a0b2c32b91b1b54b0027f972db61f0a5e54644403 +MISC metadata.xml 268 BLAKE2B a4d67334cdad8626d60e46b677ee1c83f569e5e20b3739a7664bb33be1829f8478af35e135bf734a6ff151b8543ea6c4ecafbf822cee8189f7e7096bd9698711 SHA512 59d3d8213b1a219396b74b6f4188c01e1cb4eb1c63e6792ce1e7fdb8000d1a4625919337ff77288ca7f7e07d9753f481d2381a06f554012633cd678194c980de diff --git a/sci-biology/iqpnni/metadata.xml b/sci-biology/iqpnni/metadata.xml index 959160fe46b1..ccdff086e20b 100644 --- a/sci-biology/iqpnni/metadata.xml +++ b/sci-biology/iqpnni/metadata.xml @@ -1,5 +1,5 @@ <?xml version="1.0" encoding="UTF-8"?> -<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<!DOCTYPE pkgmetadata SYSTEM "https://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <maintainer type="project"> <email>sci-biology@gentoo.org</email> diff --git a/sci-biology/kalign/Manifest b/sci-biology/kalign/Manifest index 120a6c59c603..62fab70bdcdb 100644 --- a/sci-biology/kalign/Manifest +++ b/sci-biology/kalign/Manifest @@ -1,3 +1,3 @@ DIST kalign_2.03.orig.tar.gz 114022 BLAKE2B 3637bde4e9b900def668043e75b2a52ed17a8aed6f894e323b1b76f216ad50784fb2ee352389f8888b5365efd5681361af3818ba0ca593721b19c497ffb83930 SHA512 d60152bd7124f77ea972ea7dac19f47eb731646a12ecafbee8a99335c20a36fb3ce2bdc633b346e4da1016d8e56a0f297f9b33c9b6285197946f404dbc390b0a EBUILD kalign-2.03-r2.ebuild 601 BLAKE2B 4d988368b81b04012c426de46f87d8287a685617eee1c727a899a9c1a5165130970d08efb5f48b1afadb947ec4a6a0effabf56de00c9eeeb08ec40cc482e58a2 SHA512 f19df61247a35a5a03164ad1a01968a078be043e53f53ff62ea35ba20787d84067fb4cd9212a9294a26270f95c7702ffdf571691df0311856f1de1973d6012ff -MISC metadata.xml 267 BLAKE2B 7cf386952842945148119de3263231db4d1046d5f54811f7e303ed8ec4d27cbc1960b99c92daf6f32e5b981c2fb9f50ec666be6193865d6e18541b7427a152a9 SHA512 91ab266d9ab24401bc0fec759c5b6cfcf44a3c5669fc31c7301d79770839bb5dfa0e155d949392ef06176b4a0b2c32b91b1b54b0027f972db61f0a5e54644403 +MISC metadata.xml 268 BLAKE2B a4d67334cdad8626d60e46b677ee1c83f569e5e20b3739a7664bb33be1829f8478af35e135bf734a6ff151b8543ea6c4ecafbf822cee8189f7e7096bd9698711 SHA512 59d3d8213b1a219396b74b6f4188c01e1cb4eb1c63e6792ce1e7fdb8000d1a4625919337ff77288ca7f7e07d9753f481d2381a06f554012633cd678194c980de diff --git a/sci-biology/kalign/metadata.xml b/sci-biology/kalign/metadata.xml index 959160fe46b1..ccdff086e20b 100644 --- a/sci-biology/kalign/metadata.xml +++ b/sci-biology/kalign/metadata.xml @@ -1,5 +1,5 @@ <?xml version="1.0" encoding="UTF-8"?> -<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<!DOCTYPE pkgmetadata SYSTEM "https://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <maintainer type="project"> <email>sci-biology@gentoo.org</email> diff --git a/sci-biology/kallisto/Manifest b/sci-biology/kallisto/Manifest index 606b0c386d1e..fa15e14e7cdd 100644 --- a/sci-biology/kallisto/Manifest +++ b/sci-biology/kallisto/Manifest @@ -4,4 +4,4 @@ AUX kallisto-0.46.2-gcc11.patch 556 BLAKE2B 96750a155c248714b254842033a58db7f2ca AUX kallisto-0.46.2-htslib.patch 1082 BLAKE2B d00487073fb0e9fdd6cfe07d14dadc1f23c043a793381969073ef74ea6798d48dad5a3a5d3411271f6fcb02a84c5bdbc4d35d31a916cbea2341137384e3ec16e SHA512 61ddfc3099c70e1bd448c43c1cc490a5d00effe5ccdcc0904c7c3d275282e2c1bb5ed8ed41cadf03c28b36b208db73cfa61ec7883116575e9b64941e1b0ca818 DIST kallisto-0.46.2.tar.gz 2693869 BLAKE2B 73d725e74133d64b9f7910f69a5fff85eac05b93ad6891807a6fd4e16a1fa16a55306058db3fcb4e0fbfeb0719d3a9d3c8da7d2b76b64dde5a2fea51b0254b99 SHA512 6aca29afa0abe1c6896d27745fd2436c9b9aaf298d70276baf877dbf0aaaba94df54b9a42829c8f8f7c02e7262ecd1837b8a021625c3066a10c0cc0551179093 EBUILD kallisto-0.46.2.ebuild 1385 BLAKE2B 0100f200cd014b54aa3b3efe45992f2c1c0a71dec5a3a349e47750b4d9853ebff4a70d6db017c761e64ccb7f73bec5222fbe8f2caea28d1b473e24d5d41fb0c4 SHA512 079559274c42faad8b090dd0d4d71da226a4e161051f9a10af949ea3b2f3aa3631222e31934bc225d7f15536f99ba31ec881296fc5f15324f14a526e5ef8788a -MISC metadata.xml 345 BLAKE2B de5a80ed6236a16fe08fb6a7eb815379edfa12af65db8c96a92b7494e8633661167152e1579fa886a13cc8060f0a68ac2646bc0a2321ce1fb39f9585bdc95511 SHA512 162700e5baed9b4696b90ecd014af596dca15a21bb27ffac4bc945c51701ec18e5cae963341670eb679873dfb54e22bfb9cb39299a5a00639e6afc6fd9f80412 +MISC metadata.xml 346 BLAKE2B bcf0798fe760534c24a61acbc8f7775c1ab8d22abb7da232f1829d609006a435f519f8e4006ee3c0a79677efc39d9747786ebf393a0373e6d53aabe218da9ac9 SHA512 fcc275ff592a083f82eadbbbb2d71085286fba3307d9316ddc87f18994ae652b468b5a4314b763189a0f789d262da31769d21730f80340ace2095a008276993d diff --git a/sci-biology/kallisto/metadata.xml b/sci-biology/kallisto/metadata.xml index 03ad8ef865a9..5d84bfa5c986 100644 --- a/sci-biology/kallisto/metadata.xml +++ b/sci-biology/kallisto/metadata.xml @@ -1,5 +1,5 @@ <?xml version="1.0" encoding="UTF-8"?> -<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<!DOCTYPE pkgmetadata SYSTEM "https://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <maintainer type="project"> <email>sci-biology@gentoo.org</email> diff --git a/sci-biology/lagan/Manifest b/sci-biology/lagan/Manifest index 6b6322158a4d..8d1bb3108683 100644 --- a/sci-biology/lagan/Manifest +++ b/sci-biology/lagan/Manifest @@ -8,4 +8,4 @@ AUX lagan-2.0-makefile.patch 6257 BLAKE2B 284dc6f21dd303f4b10f6e8cb30054c4ddd8df AUX lagan-2.0-qa-implicit-declarations.patch 1396 BLAKE2B 556a43acf76e20a8484fd6ab5d0682b4b29206568b657b8daf09f79577890afd8a594b3897fc2322fffb5e2810a018638af0488c872e9d0794cb685a55b91e79 SHA512 4275aacf1dfa7d712a14ea5d8eafe11045c3b47a02c92915703d095af7b00f2206687eec568d14bfd00718f6b2430bd38cf70ac86cc5d550870d19f5fe6c6d97 DIST lagan20.tar.gz 589115 BLAKE2B 8aaee40b767d7c1828760449e3bf2718210ad345447524ec2c391eb9f2856023f9258618d3d2625b15c42af814615870082bff6320ba0372dff79221798d2618 SHA512 f77217ab534df33834a725eb6e1b716f7bbffa98768a42c2294a6ab62404192e560bb05ffd41e4cdccb5b96ef9efceb8ecdc06472bbc6a301e1d11572ba29b98 EBUILD lagan-2.0-r4.ebuild 1493 BLAKE2B 81a03c4ab005e5190a2275fa160b86fb16bfb3d8ef1dc794363df692cce7eb8389974af99acbaa5677903db2d75e02e63920cae712abcd7aa421fe7326b8afda SHA512 b9b8e5e12a9ea1276f38806f933cbe7e73b63782510f4e66336ab0a5e1ceeb634d46b81eecf953421d5eaf7e1ce42e130df40b66e6137f0aa8af68155e36363f -MISC metadata.xml 267 BLAKE2B 7cf386952842945148119de3263231db4d1046d5f54811f7e303ed8ec4d27cbc1960b99c92daf6f32e5b981c2fb9f50ec666be6193865d6e18541b7427a152a9 SHA512 91ab266d9ab24401bc0fec759c5b6cfcf44a3c5669fc31c7301d79770839bb5dfa0e155d949392ef06176b4a0b2c32b91b1b54b0027f972db61f0a5e54644403 +MISC metadata.xml 268 BLAKE2B a4d67334cdad8626d60e46b677ee1c83f569e5e20b3739a7664bb33be1829f8478af35e135bf734a6ff151b8543ea6c4ecafbf822cee8189f7e7096bd9698711 SHA512 59d3d8213b1a219396b74b6f4188c01e1cb4eb1c63e6792ce1e7fdb8000d1a4625919337ff77288ca7f7e07d9753f481d2381a06f554012633cd678194c980de diff --git a/sci-biology/lagan/metadata.xml b/sci-biology/lagan/metadata.xml index 959160fe46b1..ccdff086e20b 100644 --- a/sci-biology/lagan/metadata.xml +++ b/sci-biology/lagan/metadata.xml @@ -1,5 +1,5 @@ <?xml version="1.0" encoding="UTF-8"?> -<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<!DOCTYPE pkgmetadata SYSTEM "https://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <maintainer type="project"> <email>sci-biology@gentoo.org</email> diff --git a/sci-biology/libgtextutils/Manifest b/sci-biology/libgtextutils/Manifest index cf88825b18da..9f30234d87ca 100644 --- a/sci-biology/libgtextutils/Manifest +++ b/sci-biology/libgtextutils/Manifest @@ -2,4 +2,4 @@ AUX libgtextutils-0.6.1-fix-build-system.patch 1719 BLAKE2B 993f1e68f960853a264d AUX libgtextutils-0.6.1-gcc6.patch 724 BLAKE2B 14ebd0ab5ec4685688caa922dacccdaad9101af0814a93b08f0c9ba5e50ac6a02291528b6ad3d61b48a2f29a25b63e421690f19109351f4472cc118886ca0e10 SHA512 74ec8fafc699cadc5d40f5284cd42cfb8c949744b7a16bbf8142c8db71ad6c921551da03f260e82bfe84b69dd5fbd2261031fe22aee6b3396515b1f66576a530 DIST libgtextutils-0.6.1.tar.bz2 273459 BLAKE2B 81b1e9b467287ed9551fc53abddf5757efb2dd1c98f0388e2128535fbe70b706badd5702a5b5c3cb19a34c26ffa218c9c41caf9f17770a015b09fc13fabe4d53 SHA512 0bc392385f9e6c345dff82b3fb04f322e8aceca769e15a3a87da6c718b6e9a7e1de082940d4bb0339a4c3a86f706fde0de047df459682aa9ea216d6e5c17eab6 EBUILD libgtextutils-0.6.1.ebuild 623 BLAKE2B 5bd2ff34a6898b662e6e624a77682a358b9340c6b94b9dfa40bec0637d4074ec648ca6146ee870f9cf5a8141028d23aedc55407aea04fbf2b69d62699d69d547 SHA512 e72eaddb48422afe71140394825964e6778a339ea182d614178061eb294dada1b81e7b5221a1a19d9d2ac720200f6eb4a7eab09f6ef1b7425ce7dda491add449 -MISC metadata.xml 384 BLAKE2B 5d5964f09ec6c5b7d0e7abba76515794489f29f72f1b0af6783662581a39a8d125f58d4a0138baeeeb503a828ccd4e847ee910b8f455a68ecb6914beb0800e73 SHA512 53a49cfa6f7909adb815de8c83b06caf5cae5b53adc3d7fbcb12b48e02970e00ab34255a5904f35f3f479a9dcc75505bfc7237d1076c3b52540c0802dc65a04a +MISC metadata.xml 385 BLAKE2B 9ea1955bdfe1dfba6a10590f53882a0db769438fd2a9e258e9f30df8a9f4eed827b671b3e8ba51428de37e88e2423d78f82d4e9223605be9de79291f5ea6df7b SHA512 05c7969622e9535b1ec2b791dd4dd8496ea96d51f9ccbd6ba98ca807124e5eb4ddc3fb6104817aaccd50446d990c06e13517a76b1e5192ae5b992f138ecaaa44 diff --git a/sci-biology/libgtextutils/metadata.xml b/sci-biology/libgtextutils/metadata.xml index c8c5adb77c88..2de5d595743e 100644 --- a/sci-biology/libgtextutils/metadata.xml +++ b/sci-biology/libgtextutils/metadata.xml @@ -1,5 +1,5 @@ <?xml version="1.0" encoding="UTF-8"?> -<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<!DOCTYPE pkgmetadata SYSTEM "https://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <maintainer type="person" proxied="yes"> <email>mmokrejs@gmail.com</email> diff --git a/sci-biology/mafft/Manifest b/sci-biology/mafft/Manifest index 3056fbcb330b..4525adca70e4 100644 --- a/sci-biology/mafft/Manifest +++ b/sci-biology/mafft/Manifest @@ -1,4 +1,4 @@ AUX mafft-7.305-fno-common.patch 185 BLAKE2B 1230b838fa93b560fe0b0d9dd124cec2daf92d1dbcd75e371af92cc070bf62cea23c7c9ee3d87798de70911e4c316e444c875e79b3cf93f757b7a6fdfe2e279b SHA512 fe9de41eaea3bf799065fac88b336ec45af3c5b4d7d5272a477d99165b88c27f7e7765908e7955eaa0a74bb59df10a0ab77b822fd29bebca601d124938f3489d DIST mafft-7.305-without-extensions-src.tgz 458448 BLAKE2B 5d5fa86e6faa472182c5c48f42056d81bbf545db56426969ff44a24146d4189a7650e85ea6e9fa8b40bb613392bf53bc5dea26012a86eb873c18bee91e6fdc41 SHA512 2aa351dd9b329024f183642cd98287239d12a00a2a65937e072560cba54925bed1fab19fafc734d9a5048ff85151560193ddb0796e0d7510d921fafc4553ebb9 EBUILD mafft-7.305.ebuild 2056 BLAKE2B 4d6599082401880abfa483f5fc23b9379dfca2fd410d948138b0005fcd43737b0dd92777d19b606a9c9ef77a03fdb667122eb8d56d053753d3e83452d0a24a6d SHA512 a6fc3af370b4e677d49372aa7c3908e33574cf7eeaf7cb02025c89b8654152a8cb622850d0f28f880f27cbb3e4743933798c9d843060383339c56ddb6b7792c5 -MISC metadata.xml 267 BLAKE2B 7cf386952842945148119de3263231db4d1046d5f54811f7e303ed8ec4d27cbc1960b99c92daf6f32e5b981c2fb9f50ec666be6193865d6e18541b7427a152a9 SHA512 91ab266d9ab24401bc0fec759c5b6cfcf44a3c5669fc31c7301d79770839bb5dfa0e155d949392ef06176b4a0b2c32b91b1b54b0027f972db61f0a5e54644403 +MISC metadata.xml 268 BLAKE2B a4d67334cdad8626d60e46b677ee1c83f569e5e20b3739a7664bb33be1829f8478af35e135bf734a6ff151b8543ea6c4ecafbf822cee8189f7e7096bd9698711 SHA512 59d3d8213b1a219396b74b6f4188c01e1cb4eb1c63e6792ce1e7fdb8000d1a4625919337ff77288ca7f7e07d9753f481d2381a06f554012633cd678194c980de diff --git a/sci-biology/mafft/metadata.xml b/sci-biology/mafft/metadata.xml index 959160fe46b1..ccdff086e20b 100644 --- a/sci-biology/mafft/metadata.xml +++ b/sci-biology/mafft/metadata.xml @@ -1,5 +1,5 @@ <?xml version="1.0" encoding="UTF-8"?> -<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<!DOCTYPE pkgmetadata SYSTEM "https://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <maintainer type="project"> <email>sci-biology@gentoo.org</email> diff --git a/sci-biology/maq/Manifest b/sci-biology/maq/Manifest index b118cbce1e10..8119c259e7be 100644 --- a/sci-biology/maq/Manifest +++ b/sci-biology/maq/Manifest @@ -5,4 +5,4 @@ AUX maq-0.7.1-remove-64bit-flag.patch 787 BLAKE2B 2e94066962194133ccdae4095d3d6b DIST calib-36.dat.gz 196371 BLAKE2B e4dab71e0830603a7c25bb4c8e15f92e4a5068eeeece451a3e0a2a9e2c4f65b87325e7ff4e4e5543b79f2c3d9dd43c9398cdb32241535bf44e66705bfdf683f7 SHA512 1033ad47b31882823f71f16054f366a6853b4b5e1fb286ab2c5f62c1409ed20e6dc0faec7e356350e91c71d25a198d8e0d7a521b3662b5e2fae22af44098e8b7 DIST maq-0.7.1.tar.bz2 368645 BLAKE2B a7989ae2348a7332f17a75c6fccba55deb8bd9330863d0c5ab3bf997f2f07abd1ca89ebb41d034902f6571ee36365f63db9c8c84c1e5d3d788236279581b989e SHA512 acaba2d172f8f4ef7a2b1254bd220f134a5eb8e4936af16bf7fa6695d016e6b6fa9a5b00d073ec1ecc0ecc39dfb1c9700c38fd017edb5bd49a83de383cb0d30c EBUILD maq-0.7.1-r2.ebuild 799 BLAKE2B ea3f9417c26dd0926866436bc00e6f071d1c08d121c820affe7d4af42a55b3d2a356949415bd4e8ddc11d4eb3ab1dff330aead0dfa03f3236a93087fa3b666b5 SHA512 5e52158937efbb822f9e521ec19b76a3dab1d6823da94cc154947d1024d2aa59bab00b111eb9d3d3e23a59782f2069ff4aa079133fa4608a4aa37e623e14c265 -MISC metadata.xml 344 BLAKE2B 73666ae14f64c6b26032a175e23428661cfc81a88edafb0afcbd3a1fbb722682b44e3985aca00b1105fa2ba34b819b806a84a7bf4aaba23e9337309f0f3aea33 SHA512 01962a043f6efd23e14570c486b43f89319c47d040fe94324b67e077cbc755435d236eb736e70c5fc582798c8765daa0f85a1f39a3d18ab27bff171fa7765e45 +MISC metadata.xml 345 BLAKE2B 3f590b0bf8c9f9fa9470f6b8ed3b20643c84fc92839740e6aebe720edd0a6e0b8bb5d2b74d4dcd8cf80a89c2769308b89e21f2f386a62fc28686f883eff56bbf SHA512 244600e6c19400a837eb859a09582fa78a670d81a58e6a461689d2695273b450df999334ffc44eecdfbed9232784af84e7cdcabe7ee045ae51a24509f2aabdcc diff --git a/sci-biology/maq/metadata.xml b/sci-biology/maq/metadata.xml index 0b39d2a8530d..c555decd8d6f 100644 --- a/sci-biology/maq/metadata.xml +++ b/sci-biology/maq/metadata.xml @@ -1,5 +1,5 @@ <?xml version="1.0" encoding="UTF-8"?> -<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<!DOCTYPE pkgmetadata SYSTEM "https://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <maintainer type="project"> <email>sci-biology@gentoo.org</email> diff --git a/sci-biology/maqview/Manifest b/sci-biology/maqview/Manifest index 99ef4f17db76..6fbb33162603 100644 --- a/sci-biology/maqview/Manifest +++ b/sci-biology/maqview/Manifest @@ -3,4 +3,4 @@ AUX 0.2.5-zlib.patch 1437 BLAKE2B c8a8908ca6586f3fdff730c2eca39e54b3d08e8fe07fd6 AUX maqview-0.2.5-gcc4.7.patch 575 BLAKE2B 8e461d07e0421e5dc1e209e83ed3fccfdcd541954481bbbb1f478cddb9ff045c3704a086a18d6e7a8b255d226a24eca7d791cde9e59673c842a4094d56f03ba0 SHA512 277086e1d6d536ae368083032421029d64d5173e643edaafbad2833d56e8ec283152a49d9874a7142333e0fee976d3600ed118b6beb0482ec7e0e95f4a36fba4 DIST maqview-0.2.5.tar.gz 383410 BLAKE2B 7058f32e49267dfcc8b25da2ca2bbbd5134f66f0f9cbd10de7e876365d955d2e51cbab342af817f13018b7b1903872033c363fe077f10ce76e5fcc87da568dc1 SHA512 40bed0a1005ca96fdb12773cd9c22ddc926fe722c64652031609a17a50ff725a3dc117d51f4f27eda68b48861da78427469aaedff744f29921236b486396aed6 EBUILD maqview-0.2.5-r3.ebuild 608 BLAKE2B e5ace31c7344228551c0889fd091a78c5d727fb1f3222d5dde51c011fd223741fcbd3954ee92c1b12406a7783bb952c6c49a5fdd154e11e1ecef17058b3983c3 SHA512 71d33765c88d05e9d2c9c24c7d3bed6cefc194bbb4844a274ccb5b16380d8e1608acfb929b9dd8631adf9542ee3af5bcfd1cfed50f420b2d352d9b0d31eaf7bf -MISC metadata.xml 344 BLAKE2B 73666ae14f64c6b26032a175e23428661cfc81a88edafb0afcbd3a1fbb722682b44e3985aca00b1105fa2ba34b819b806a84a7bf4aaba23e9337309f0f3aea33 SHA512 01962a043f6efd23e14570c486b43f89319c47d040fe94324b67e077cbc755435d236eb736e70c5fc582798c8765daa0f85a1f39a3d18ab27bff171fa7765e45 +MISC metadata.xml 345 BLAKE2B 3f590b0bf8c9f9fa9470f6b8ed3b20643c84fc92839740e6aebe720edd0a6e0b8bb5d2b74d4dcd8cf80a89c2769308b89e21f2f386a62fc28686f883eff56bbf SHA512 244600e6c19400a837eb859a09582fa78a670d81a58e6a461689d2695273b450df999334ffc44eecdfbed9232784af84e7cdcabe7ee045ae51a24509f2aabdcc diff --git a/sci-biology/maqview/metadata.xml b/sci-biology/maqview/metadata.xml index 0b39d2a8530d..c555decd8d6f 100644 --- a/sci-biology/maqview/metadata.xml +++ b/sci-biology/maqview/metadata.xml @@ -1,5 +1,5 @@ <?xml version="1.0" encoding="UTF-8"?> -<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<!DOCTYPE pkgmetadata SYSTEM "https://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <maintainer type="project"> <email>sci-biology@gentoo.org</email> diff --git a/sci-biology/mcl/Manifest b/sci-biology/mcl/Manifest index 39003fd43076..e630e14005df 100644 --- a/sci-biology/mcl/Manifest +++ b/sci-biology/mcl/Manifest @@ -2,4 +2,4 @@ AUX mcl-14.137-fix-autotools.patch 1524 BLAKE2B baad5d167379b8f38543159d88f66367 AUX mcl-14.137-fix-declarations.patch 1266 BLAKE2B 2df8acbe98dfbf804b81950e1d60963fea49aeff0b8bce52c75bb757d72cb16adbf13b8567acb8b63ab76af63da3086fdedf25d363f2986881bb70e2b27630b9 SHA512 cce0825fe7d01a3f6c69bf1d1fcac1277b3beef6cca0f3ee729d2c4f60f57ef2a9223b7f3a8f63743011751790c625ec3601cc46fddde236eef37cbce982a9d6 DIST mcl-14-137.tar.gz 3035491 BLAKE2B d6b975841a9094055306056ae0cd646cc92af69018893981d32b0604a583f61d3764bc67c1e21a0861b89a17013c01bcd4c1d7cbb4e0c5856403c2a767121423 SHA512 7e399e571de60da5e1ba9e643b7f0cd98fe484cc8cef517222a57322b5c7a04afa675c7cf0ab88b5801efa9565e5e67a14c4914987964308391d88dd4be1bea2 EBUILD mcl-14.137.ebuild 569 BLAKE2B 0fae322e4911c52407d9b053dfcb1d08dc19624c1b32e68800135338b44e16d82eee4f77f1b11b88f002c5739b2f01c356d21154c48fe305800b88d802febaa0 SHA512 1be49c6038260326f6fe64bf0afba78258d355e8e74f3f3cfc30dd1f0de2971159ac3fb969b09710df8eeb28fa559135516189d9e56544287fd2089a572b68e3 -MISC metadata.xml 336 BLAKE2B 077cf6e56ca5ba6480b00411536b1814f73b8dc93faf9337e0e81f3c47f174172894487ef072637dd396f39a95cd3a6538c2fd3e62328c3659882629c9b96dff SHA512 41ed664e2fdc26c5984fb55d90365cb02fe0de893d74e74935d2a9f6eb17e2e56a33210ed7d03c28375fb27ebbae3dca472de79a2e387ecf769a604aea629da3 +MISC metadata.xml 337 BLAKE2B df0eb3cc8ed7514f8cd0a8436c2fd103208d524dfc5caa260e63126e43554903bdb12e68808e11838852a08b528acf19469fe2e5c095cdcb88df2f2308112c5a SHA512 9482834f284d706bebbcb33b50f01a6aabf800675867666d287b21f2fb0e4400121a87d402250d93f05597073d5211b5b9a40cf875f8eb94199ae0b0558d7669 diff --git a/sci-biology/mcl/metadata.xml b/sci-biology/mcl/metadata.xml index 25048faf1643..ddda352c113d 100644 --- a/sci-biology/mcl/metadata.xml +++ b/sci-biology/mcl/metadata.xml @@ -1,5 +1,5 @@ <?xml version="1.0" encoding="UTF-8"?> -<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<!DOCTYPE pkgmetadata SYSTEM "https://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <maintainer type="project"> <email>sci-biology@gentoo.org</email> diff --git a/sci-biology/metadata.xml b/sci-biology/metadata.xml index fb82178e320b..6b9dcbff3e29 100644 --- a/sci-biology/metadata.xml +++ b/sci-biology/metadata.xml @@ -1,5 +1,5 @@ <?xml version="1.0" encoding="UTF-8"?> -<!DOCTYPE catmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<!DOCTYPE catmetadata SYSTEM "https://www.gentoo.org/dtd/metadata.dtd"> <catmetadata> <longdescription lang="en"> The sci-biology category contains software that can be used diff --git a/sci-biology/mira/Manifest b/sci-biology/mira/Manifest index e26af9ae8615..4f41daaa1741 100644 --- a/sci-biology/mira/Manifest +++ b/sci-biology/mira/Manifest @@ -4,4 +4,4 @@ AUX mira-4.0.2-cout.patch 735 BLAKE2B d386a704829b7f3264ee69d55d7451a5479a9d121e DIST mira-4.0.2.tar.bz2 10368046 BLAKE2B cc84c6c13c8024409634ccafd103be8a4f2a9e27fa7f19d2ef401393db9e8063a6fac2f21cd25dfe58e90aee8cf38983369d928241f9bc65e78da0e95fa41d3b SHA512 a7f9845de207cefb87ffa652f4f6b9b85735ef22eeb29b456e4d946ba1675e7dd2c78abb2da56f11fddcb699f5c0700a08ce298196ce1a8e586a758a8d3bdc7e DIST mira_3rdparty_06-07-2012.tar.bz2 31656 BLAKE2B 7e952d96e9073acd8ab1d1fc7c51c37f6526287d31698c5090500d421147285b535e8cab7e49f4e51a5634c901d1cd969206b1727e683d3fcebdc195399e3589 SHA512 4d4dbdf7ab5126f9d47160bee8bc127b6a225de8087f6b9914c754324a74d966333207c86a3f38cf0ea9f91408707e2a24086dbe1318fdfa2870b0c39bc5033b EBUILD mira-4.0.2-r1.ebuild 2563 BLAKE2B 7cfb5eb182024af1ef2dc73de85909bdfe57cb95bb1af557c64e2f9ee002eb3363360b27283d8cc31105bd97d4b4fca2d70830bcd02c983402773793c0696409 SHA512 a4783d30af6224c0931370e05d932ea0a98a08487b3036d75b43a303063b575772a385b1ea54758a80987cfcff39512bd506b383178413fb8dfe542b87adbfca -MISC metadata.xml 355 BLAKE2B 2557fbd5c3427ccced7fc6d233954a3e9d4297c0bec17158997f4f7fb490b525235ae27fff1ed19113b596de77a23518505e20531c7e40020e3f54932f5d9e6f SHA512 9d9037805b94622cb468553fa27c948de2849ac4c6dc1eafae8c3261554b5e97b631fe77e4e589eff613822d316b2843bcab0c47547b202651c8a804a516554e +MISC metadata.xml 356 BLAKE2B 9a95855c50b94970679770e6359d9fca38b0a239c63eca3483dd36490beef6906b416e684e0da4c7cfb56feebf58273636d4d0eecfd3426ff96eeec655075458 SHA512 1ea0315c25907e0db27cda049b798e749a1543005467a0f4ae23d0d7d51d41312f520d4847e5d8758c839b3074e56cc18b4d1819bac2448cfdddce223fea9dba diff --git a/sci-biology/mira/metadata.xml b/sci-biology/mira/metadata.xml index 0704cef4806d..5ef527dc14ca 100644 --- a/sci-biology/mira/metadata.xml +++ b/sci-biology/mira/metadata.xml @@ -1,5 +1,5 @@ <?xml version="1.0" encoding="UTF-8"?> -<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<!DOCTYPE pkgmetadata SYSTEM "https://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <maintainer type="project"> <email>sci-biology@gentoo.org</email> diff --git a/sci-biology/mosaik/Manifest b/sci-biology/mosaik/Manifest index 1b60b19ffe2c..cbb1a7fc1f4b 100644 --- a/sci-biology/mosaik/Manifest +++ b/sci-biology/mosaik/Manifest @@ -5,4 +5,4 @@ AUX mosaik-2.2.30-gcc7.patch 1252 BLAKE2B 896d662807c223cc69eacfa2e1fcb457c696e0 AUX mosaik-2.2.30-remove-platform-code.patch 399 BLAKE2B ec711a9b112efa87b2811e4545bfc58716393576915f71167ff700ccd809be4fad5e07bac7a5cb7df911615f4c996284cd711c1d1cb62c5a18695e719e6574c6 SHA512 4aec709660b41fb61bb9219a587255a5f416992a4478c2a7eb67374d1425f0a4e0b4d356827a9214e2f2718b635169c95d3288bf10388a74e50d498c39c2f259 DIST mosaik-2.2.30.tar.gz 4387062 BLAKE2B 6f373aeae4f68be2455556e7f79a5850e25d804bd482d85a846b44f8adaabb2513ffc7ced774f5ead6dbc8fc9dca9d64f76f83bc5b55b1be4073a8cf309e121b SHA512 1acf534e6defc927fc22937a7bae6786e85ab7aa234b4209169f1267f1a9bd68415b441c6aed2e7cd667f694a562017ebc9457251958f77386259ffce9812b10 EBUILD mosaik-2.2.30.ebuild 1133 BLAKE2B 118906af7e1c8b68cdc1f6c7fdc300cca132a648d65ff193aa02a7998b6f4a75dc1b7daa0cb5631f291073ca4285722b10295364c324c0d83d842127ed7e0d86 SHA512 12c9439396bdd4fbbeb713accc60b6189c8bff056eb9b44c963abe97d7a9520bc9765e9f8839ac426be25dcbcbc6cc69d287fb4bfef5a9d3340f6c0048f1e06b -MISC metadata.xml 414 BLAKE2B dadc852f08ed1944b4433e741d8f3c9f9296ecae8772df46193a89591fba8f3346b5b10d1a7227ba78071cc6e3639544a9f23ee61f79ee595bd10155bf6dfd0d SHA512 b38d4852ceabaa543c162eb26a54a76ba83b9d8f2e1520ec0ef16a07f49ddce9835caa5e16883f9755c99e3dba75e9ab689d254bafef92a859d251a53ff0d42f +MISC metadata.xml 415 BLAKE2B a1ecb68c52443bc41061019f246474a105586328dec03e3c26ec9f2ad9688a69b1bb7b2de1c9cd4bae1039927e2285c50dc7a0165e2464cfdef86b66e278becb SHA512 117976f4cd570fc0e481aa7419fecc7ddcbf3ac4484efc05bd293db239798e1591e6d775e9290f492b003860d135aa8a0bd08f93e7088410ebaac73b2fa8a37c diff --git a/sci-biology/mosaik/metadata.xml b/sci-biology/mosaik/metadata.xml index f513c94ff2f3..cbe93c59213f 100644 --- a/sci-biology/mosaik/metadata.xml +++ b/sci-biology/mosaik/metadata.xml @@ -1,5 +1,5 @@ <?xml version="1.0" encoding="UTF-8"?> -<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<!DOCTYPE pkgmetadata SYSTEM "https://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <maintainer type="project"> <email>sci-biology@gentoo.org</email> diff --git a/sci-biology/mothur/Manifest b/sci-biology/mothur/Manifest index e673f0859e3c..1fb5b4e2d489 100644 --- a/sci-biology/mothur/Manifest +++ b/sci-biology/mothur/Manifest @@ -2,4 +2,4 @@ AUX mothur-1.27.0-makefile.patch 1196 BLAKE2B dbe053a5f5629eadae57bd09545ef46106 AUX mothur-1.27.0-overflows.patch 4894 BLAKE2B a9de0276a9ccbb5e86d6cf208f86414ea8c0befdf80807e05b40bee0c6f685cb40a608005e69eb3f77b85990424a36cde14971044cb6a1136a50d85078eb9f1f SHA512 aa392b2060cecc38006a7ac50aaa8e4249a020029234ac2abdc33441b12a09faabb0335144ff4d888e55a1da1838a45347981f49f6658f3546a54a30b5e2133a DIST mothur-1.27.0.zip 7095054 BLAKE2B 96a6410d36f64ff50591955aa22bfddf6217c7568022c8c7f70ab70c65d57af2217477de56b6f9ceaf11237cdc5380bd354cf6564002357546539585d0f58221 SHA512 81821ca95d4ce3f0d1e6aa920c4fe3fddd70f716157312ed0590c1c4ad728e6786bfe79f6badddcfb060ed5d1996cc1b5062c320a59209fef35f68e687ba3dd5 EBUILD mothur-1.27.0-r1.ebuild 845 BLAKE2B 52cc28dcfd3df857f51b9c430c1ec5f658562e922f1394f0d79cba4fd6cd33161cb5639e0d7ca95c6b5daeffebe376baa5c2df0c5db6e8c6382fda40a215060d SHA512 6fa585f94e0caf8cbe40a2673d4e5eb49c6c8c9e5cbc279deef1b525d1674ce986068a08a994fecc079b5cee2301cd92fb395d884c4e23c98afe7587a49cabeb -MISC metadata.xml 267 BLAKE2B 7cf386952842945148119de3263231db4d1046d5f54811f7e303ed8ec4d27cbc1960b99c92daf6f32e5b981c2fb9f50ec666be6193865d6e18541b7427a152a9 SHA512 91ab266d9ab24401bc0fec759c5b6cfcf44a3c5669fc31c7301d79770839bb5dfa0e155d949392ef06176b4a0b2c32b91b1b54b0027f972db61f0a5e54644403 +MISC metadata.xml 268 BLAKE2B a4d67334cdad8626d60e46b677ee1c83f569e5e20b3739a7664bb33be1829f8478af35e135bf734a6ff151b8543ea6c4ecafbf822cee8189f7e7096bd9698711 SHA512 59d3d8213b1a219396b74b6f4188c01e1cb4eb1c63e6792ce1e7fdb8000d1a4625919337ff77288ca7f7e07d9753f481d2381a06f554012633cd678194c980de diff --git a/sci-biology/mothur/metadata.xml b/sci-biology/mothur/metadata.xml index 959160fe46b1..ccdff086e20b 100644 --- a/sci-biology/mothur/metadata.xml +++ b/sci-biology/mothur/metadata.xml @@ -1,5 +1,5 @@ <?xml version="1.0" encoding="UTF-8"?> -<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<!DOCTYPE pkgmetadata SYSTEM "https://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <maintainer type="project"> <email>sci-biology@gentoo.org</email> diff --git a/sci-biology/mrbayes/Manifest b/sci-biology/mrbayes/Manifest index 160f7b2aef62..507d61d3e4db 100644 --- a/sci-biology/mrbayes/Manifest +++ b/sci-biology/mrbayes/Manifest @@ -1,4 +1,4 @@ AUX mb_readline_312.patch 586 BLAKE2B 6505a8d9fc40c0470264b6e293f2f4e51a5d6b4a73dfeaff747e2f4acd122369d810cdc86ae0d7cead3a3741cfffc02080c07618c2847985553322a1c9bf79b5 SHA512 8427c83ccb98c0b57274914d8f0d0f539ace7dbc475eb10bd586762efa3465b595b91907b55d6809b94e6b9c4f65aa139bc16a7d81b1c76f7623eae46d495aa8 DIST mrbayes-3.1.2.tar.gz 545968 BLAKE2B f4c5bbdde765fb9e596c17d5fd890b168c22cefb0d24b67c1c68623e1dcfa4df716a896fe120f7a1cac4234125b6ed524973506e47492ba3ec26e389783d618a SHA512 2fb0ee7224cbb69c1acf2ffb0c6c8974f63002cda4f39a626eadf80fad9cfc23861f8c03f5545970f3a81e02093d62b6a0549ab7d7f7080557e91e21b2c3ee14 EBUILD mrbayes-3.1.2-r2.ebuild 1346 BLAKE2B 282f7f2bf6abb8370b5a007a8e680009f3f5e8e839d7817a1cb3b83e515b2909d5a9c7aa3eae6355ab59c4e1e2e4b9a7f8694076d50b019232fa367cd93df231 SHA512 60541b7af0243c4263d302d69ea38c6f1fcee96739eba121a48bf42e2b46f210efa971d65d0d517ed6b383fb6ce337008b13655c4f52e2783d456a04b43b9eb7 -MISC metadata.xml 916 BLAKE2B 511d932eff0de935a1c8634cc6398bfe6cceb7f2766534e5486f5ff2aa4c900b8d48d7dabc5cee2506061c36421f0ef336f43b5df5d23a03ab5911a1fef87b1b SHA512 ab6be2e4111088bc13e6da5f65d11437dc05dbcdeab83e5d3899b913ff9ad3dc1f22ec81f2fe73f60bf991d01f0a8691eaa124ba24bd7ebb17d995fdd271bfef +MISC metadata.xml 917 BLAKE2B b4eb74008ced11d00c41b3262ace2a00439e6b8b91abeeb9539d4237d4cfab92bc07bcf8b979e2407e58714e38004acdc3714ee9c01b849f855a7ad023286521 SHA512 03fec6e855e5d22c653b2f04fb128f0286cafbad83ca3793bf4e7c79df769c7a3234ed964be25e884c5f1a1c278174ce041343c97dd818a650020cc350ee8012 diff --git a/sci-biology/mrbayes/metadata.xml b/sci-biology/mrbayes/metadata.xml index ca6afd95a12e..348542381e73 100644 --- a/sci-biology/mrbayes/metadata.xml +++ b/sci-biology/mrbayes/metadata.xml @@ -1,5 +1,5 @@ <?xml version="1.0" encoding="UTF-8"?> -<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<!DOCTYPE pkgmetadata SYSTEM "https://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <maintainer type="project"> <email>sci-biology@gentoo.org</email> diff --git a/sci-biology/mummer/Manifest b/sci-biology/mummer/Manifest index 74a92f57d995..52c9f3976850 100644 --- a/sci-biology/mummer/Manifest +++ b/sci-biology/mummer/Manifest @@ -3,4 +3,4 @@ AUX mummer-3.23-fix-c++-qa.patch 2615 BLAKE2B c4af27ae72445836a71ef6417f56b2feaf AUX mummer-3.23-fix-shebangs.patch 2357 BLAKE2B 1a244047f55483240bc257892f2a607ab695624152613d665be5abecd85e02484a251e33f411fc67377dad3c49eb5ac32624acefa5cabeaadc8b5e3506dbb21c SHA512 d0ac58170232244385328d3a23e6b8203593d32dda30d75915b4da8ad935fc1dc447b2a7c7d982b0a86c9fe4ca6f8c2031fe7f81af8a72bfba4d56ae6d246235 DIST MUMmer3.23.tar.gz 3160143 BLAKE2B 5be613e0b7bcdbd0c38bb6dd7ff8d5c220ceb596582d89e0c1b62bbb2b289ce3a1842cd7e335a62d612af55388e21b6f780254de06f59e9e49a7eeadd04b6d8e SHA512 f31d36ef3e07fa4ac017c76c1c8d5f53882a59b061742d201f1f7aafb29d16af8268985285398dd90e98d276b2513d2c611f9876069b23fe82b5da1d3ebc04d3 EBUILD mummer-3.23.ebuild 1133 BLAKE2B 9777159545c4cf807670d87fe2b4e2db2fd1fcfd9ac5139dc7cc3314cdeb17b03d505d4e7b3cf0995f082782d1ad1c488536df5e50d377b1c7dd3733e9af781e SHA512 a25b94cb5e7a8261178d0a503c33812f106dde277c94a8525a0a8fcd6c120ec6b0d5cb80f26f0710245f89251ad4ac6e4fe86af42f31b31f37ab9eca6afc3b79 -MISC metadata.xml 347 BLAKE2B e7c4951631c178a9a0b37ef46f4da256f8021c37603c532b6cc2f6257e42e25aa3fdc9ec2c3f0a8666a70966bd60c0c23eaacd1aa2e630247b8077462fa9d724 SHA512 7465b510db1cbf2b5853452e947585e6526068aaa0562b7e3ad415838d97ecf30cf32967997c16bab17ac9c41921c0f92dc2a9647fde402f448d6f6dc1d2244c +MISC metadata.xml 348 BLAKE2B 4f2a263ee7069564001bbbd3d68c710f9bb1dd0f34c2cd9ad2459b483c942bb4cf0785f57c60fa1a27b57a90b5f445fad1422025e424e70b596bb90fe4f64857 SHA512 17850f7126f24e9d1ae26c3034e679881686f775afddf916905da3108bc2d5e3ce0e6b2aa3f63427c62cd76f7cf232c4e9b24077e5341e9f022ebe1c7e6ee1d5 diff --git a/sci-biology/mummer/metadata.xml b/sci-biology/mummer/metadata.xml index 4a3fe8e7bd15..16d1e87a1b24 100644 --- a/sci-biology/mummer/metadata.xml +++ b/sci-biology/mummer/metadata.xml @@ -1,5 +1,5 @@ <?xml version="1.0" encoding="UTF-8"?> -<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<!DOCTYPE pkgmetadata SYSTEM "https://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <maintainer type="project"> <email>sci-biology@gentoo.org</email> diff --git a/sci-biology/muscle/Manifest b/sci-biology/muscle/Manifest index d4178fd5bb6a..16b46d0a21d7 100644 --- a/sci-biology/muscle/Manifest +++ b/sci-biology/muscle/Manifest @@ -1,4 +1,4 @@ AUX 3.8.31-make.patch 922 BLAKE2B 57f112a4538b1b0a791f9e151e0e27ba8c6af2beefb6ce95f064edd183315e17a09d92a9cd0a368907e2b4a1571463669e5ef83e96758603fa4807780ea98bc0 SHA512 c948991ab4f7b7d6e05ab63df00ea6ac576587e63f808c377cc86f4e3863c7cee207569d7f0a8572a8fcf81f2e23d9dd6b1270447a0028910301d74554ab1fac DIST muscle3.8.31_src.tar.gz 515267 BLAKE2B 79a8517f7a14d8ee907104e9035e1284fcabec556544508fd9b712789759448969ce39ecbefcedac62c435dc91e109b3b5b7027120691310ffebda80ca80dd9e SHA512 2baf2aae354ae1e3f529e627be2ace86e89dd15567e1f642a625b63f08ebe3d4bd7315080c7d786d95e3eda8703545ec74af9fe83ad1523d55d00137fb7274ce EBUILD muscle-3.8.31.ebuild 580 BLAKE2B d9ccdea4e8e87b89c107d019c7b1ac87ecadf16a92c093e488e7121f6438de4cf003ffe0114402b3b7c90b08e484216908bb01e950f49f014ac748af259dcf58 SHA512 2295bd95b0388e43d2209d37bc48f69a3937bb1a568003f00a66709bea980bc5598f632bf301852149bba24d1d782e86ffca5cc066367f0a3791cd51a6aef3e5 -MISC metadata.xml 267 BLAKE2B 7cf386952842945148119de3263231db4d1046d5f54811f7e303ed8ec4d27cbc1960b99c92daf6f32e5b981c2fb9f50ec666be6193865d6e18541b7427a152a9 SHA512 91ab266d9ab24401bc0fec759c5b6cfcf44a3c5669fc31c7301d79770839bb5dfa0e155d949392ef06176b4a0b2c32b91b1b54b0027f972db61f0a5e54644403 +MISC metadata.xml 268 BLAKE2B a4d67334cdad8626d60e46b677ee1c83f569e5e20b3739a7664bb33be1829f8478af35e135bf734a6ff151b8543ea6c4ecafbf822cee8189f7e7096bd9698711 SHA512 59d3d8213b1a219396b74b6f4188c01e1cb4eb1c63e6792ce1e7fdb8000d1a4625919337ff77288ca7f7e07d9753f481d2381a06f554012633cd678194c980de diff --git a/sci-biology/muscle/metadata.xml b/sci-biology/muscle/metadata.xml index 959160fe46b1..ccdff086e20b 100644 --- a/sci-biology/muscle/metadata.xml +++ b/sci-biology/muscle/metadata.xml @@ -1,5 +1,5 @@ <?xml version="1.0" encoding="UTF-8"?> -<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<!DOCTYPE pkgmetadata SYSTEM "https://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <maintainer type="project"> <email>sci-biology@gentoo.org</email> diff --git a/sci-biology/newick-utils/Manifest b/sci-biology/newick-utils/Manifest index 53dda9d90de9..30029d8f4384 100644 --- a/sci-biology/newick-utils/Manifest +++ b/sci-biology/newick-utils/Manifest @@ -2,4 +2,4 @@ AUX newick-utils-1.6-deduplicate-libnw.patch 5843 BLAKE2B ce36e9b1160ccd2d41a29c AUX newick-utils-1.6-fno-common.patch 1359 BLAKE2B ccc59ad91d69ac2268d26e6704eeafc15c65e883bf8292ddfa6f1f5e75ef368238cbb38dea7f18fdafbb390d4e916fae1184ff89d8746ae98dfd5d759be69154 SHA512 9f6e53485e5d6872393bbf6404a112a105cde6d2e8993bb0c28b73be0458ce64a438eb574b451eefad28076a63ef82b0d204e3e78e301543d320f0e7b34b7799 DIST newick-utils-1.6.tar.gz 7518535 BLAKE2B 6b5456be6fec4311e40b19972736194a3f2eb51e8efc4a97cdcf027838459a8f22f41d10e49e7ac3e6461aa290aeed1813baeffcb5706749ebf1bf4333e28047 SHA512 1e327f9a32b5b0df097bcb63f933f9073a85f0499a2a48be122f4affca52ae1541e1a6e0cca7420447aa8fe8d10d6e76e8d89933b2f84e023d6c87b50808d96c EBUILD newick-utils-1.6-r1.ebuild 733 BLAKE2B 60cf97660294c13efba331d06d299ed21761446981e62832bf5d9fdb713196fa10f2713f0cd33e89c1dd31e5829decca3ce919806fbf92a5652e30cee4e10c6f SHA512 b6f9daeecf7035a145e53feeb9b70676154412dea04861f1093862fb0f943a2d3f26cb791506918f1f12596abe31680ce0a13081e88494270d295d5d5d70cf74 -MISC metadata.xml 355 BLAKE2B cabdb6f1dd0f44f079f81789daa15b311048672fc5b4a3e50f408a4f0a22abc30f9d20c24c34d8fdf5308ff6c18942438eca19b78540828999b506ac9f710430 SHA512 a9f72bde780552c341f039ac78d91c4958148b135a7944c232e5755edb54c064e8bb5107f54e39be798bedf0601ffaa60a0ff137709bc6b5c3a2fb65e4fe49bc +MISC metadata.xml 356 BLAKE2B 864eae616ffe2ef5a83d224ec5b2f9c05c99ef543cac7632437b9afe6e5f777e64c0efdcdba6732cd2f94beca0d4582d45f2b2e82c517fcf0ec0686373a91bd4 SHA512 4542e9afb6b196f739cbb878bdccc745da58d86d7ad948a1e95bae56e062ad784998c4a4e6ab2f676e085430fd9465f95a2f2ffbd24b611203fc39e87b8c7807 diff --git a/sci-biology/newick-utils/metadata.xml b/sci-biology/newick-utils/metadata.xml index d9bc91509874..5f547d71de93 100644 --- a/sci-biology/newick-utils/metadata.xml +++ b/sci-biology/newick-utils/metadata.xml @@ -1,5 +1,5 @@ <?xml version="1.0" encoding="UTF-8"?> -<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<!DOCTYPE pkgmetadata SYSTEM "https://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <maintainer type="project"> <email>sci-biology@gentoo.org</email> diff --git a/sci-biology/pals/Manifest b/sci-biology/pals/Manifest index aa2ce4eee1f3..744a9e62e165 100644 --- a/sci-biology/pals/Manifest +++ b/sci-biology/pals/Manifest @@ -1,4 +1,4 @@ AUX pals-1.0-fix-build-system.patch 681 BLAKE2B 8460ce718ce1a1a57970ecab525aa798e033c496a0108f44457155312653ce180ee700c76b1cf3a7b9f099a924cd7a8c0f027ba1cd65d96b688a67b97fe247a7 SHA512 bd95517d72cf567a4608878d556919396c9dd1cd77a4e49f2f8604f058c76a1f26c31760ad6ef6048ec12b76de46a6f4c56b5cb27b4aa1f91339c8f14bd963ac DIST pals-1.0.tar.gz 24895 BLAKE2B 09a24b3a2e99471378f33a84c447dea9153ddedd502de4e6b771c85ef99df5ca30f687b58d1d9d4726b29345215b617f1dc93a71b8be417d8c0c03e8ecd71015 SHA512 655e3311c63709dab1f8a13b193ed30a5ee97c04757a1e8408a74f6110ff3bdd96ba9eb07f4987ed5b83790ffa8cec67f722fee783c4ab4120483a683ebb9b8f EBUILD pals-1.0-r1.ebuild 537 BLAKE2B fd3a09ff6d4e619fd902a67504a5130656412ad9bc8201c549a5b98f8eb7711816b18b72414aeb89a4f24926db8d41457061b045aaa3bdba0cdac1bf3ce1e633 SHA512 666542e4faefb47a94ab6f7cc3be531f39e2ca3f68324a80bafbccc6c0de162d2a20dbda507709cfd2f207b61734aa21211a93bd597b02599d9648ca557d4b4e -MISC metadata.xml 267 BLAKE2B 7cf386952842945148119de3263231db4d1046d5f54811f7e303ed8ec4d27cbc1960b99c92daf6f32e5b981c2fb9f50ec666be6193865d6e18541b7427a152a9 SHA512 91ab266d9ab24401bc0fec759c5b6cfcf44a3c5669fc31c7301d79770839bb5dfa0e155d949392ef06176b4a0b2c32b91b1b54b0027f972db61f0a5e54644403 +MISC metadata.xml 268 BLAKE2B a4d67334cdad8626d60e46b677ee1c83f569e5e20b3739a7664bb33be1829f8478af35e135bf734a6ff151b8543ea6c4ecafbf822cee8189f7e7096bd9698711 SHA512 59d3d8213b1a219396b74b6f4188c01e1cb4eb1c63e6792ce1e7fdb8000d1a4625919337ff77288ca7f7e07d9753f481d2381a06f554012633cd678194c980de diff --git a/sci-biology/pals/metadata.xml b/sci-biology/pals/metadata.xml index 959160fe46b1..ccdff086e20b 100644 --- a/sci-biology/pals/metadata.xml +++ b/sci-biology/pals/metadata.xml @@ -1,5 +1,5 @@ <?xml version="1.0" encoding="UTF-8"?> -<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<!DOCTYPE pkgmetadata SYSTEM "https://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <maintainer type="project"> <email>sci-biology@gentoo.org</email> diff --git a/sci-biology/paml/Manifest b/sci-biology/paml/Manifest index e0f9ddd35a94..a1e5c6c96c0a 100644 --- a/sci-biology/paml/Manifest +++ b/sci-biology/paml/Manifest @@ -2,4 +2,4 @@ AUX paml-4.9j-fno-common.patch 521 BLAKE2B 93dda51495e65cde9b3e92379e43756c5efe7 AUX paml-4.9j-makefile.patch 1540 BLAKE2B 9ffa0f8fab089d26e325688596975944a10e9e62ba1554b532b3f31c7f508b5b1001f5481ad9b8ae7fa97ffd8bcdffda3c285935c8efa3442175f4686e0a44ad SHA512 51b05e865ff68d58cf0f8cc2bc23e8e90e5d12ac8daceb96ac9cc64fdf75c704b5b16b6b8248a0e3cd03c1b18e5bbb61727c281ad46b4988a197f695b464c80d DIST paml4.9j.tgz 6380272 BLAKE2B 58fc40904aff6ae539613e772fc0525b557c1e72c1a7a1d95176987bafed8771624ae6c53803bc71c5821a52de8212a49ad99c02c408870ec929c15b6bf217e0 SHA512 c5f3c42409bbaf5ac67c816a245f1d3175ee449dcf10232d9de539130341f80f85ae53518cbca549b1f42ddf64a6e8140a22b9da091d458b425512f11f8c1758 EBUILD paml-4.9j.ebuild 843 BLAKE2B 8f92ab034a78571de1bccecc21d04fc9eef7414d98c5a3f4a6d4a96f59ddcd32e0c0c1c82928ed3949f7c64a493fbf5c3962016425ab8bcef6b3718cf50e49ba SHA512 74100d6e6a0913c0c1a56039468b5a78c86fc13fab054a0dc6fe307ba975f84865c999f5472c1e18a5bf28c7f0fe37359f3c557965b251968eba692bec49e607 -MISC metadata.xml 267 BLAKE2B 7cf386952842945148119de3263231db4d1046d5f54811f7e303ed8ec4d27cbc1960b99c92daf6f32e5b981c2fb9f50ec666be6193865d6e18541b7427a152a9 SHA512 91ab266d9ab24401bc0fec759c5b6cfcf44a3c5669fc31c7301d79770839bb5dfa0e155d949392ef06176b4a0b2c32b91b1b54b0027f972db61f0a5e54644403 +MISC metadata.xml 268 BLAKE2B a4d67334cdad8626d60e46b677ee1c83f569e5e20b3739a7664bb33be1829f8478af35e135bf734a6ff151b8543ea6c4ecafbf822cee8189f7e7096bd9698711 SHA512 59d3d8213b1a219396b74b6f4188c01e1cb4eb1c63e6792ce1e7fdb8000d1a4625919337ff77288ca7f7e07d9753f481d2381a06f554012633cd678194c980de diff --git a/sci-biology/paml/metadata.xml b/sci-biology/paml/metadata.xml index 959160fe46b1..ccdff086e20b 100644 --- a/sci-biology/paml/metadata.xml +++ b/sci-biology/paml/metadata.xml @@ -1,5 +1,5 @@ <?xml version="1.0" encoding="UTF-8"?> -<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<!DOCTYPE pkgmetadata SYSTEM "https://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <maintainer type="project"> <email>sci-biology@gentoo.org</email> diff --git a/sci-biology/phrap/Manifest b/sci-biology/phrap/Manifest index b0ce2473c1f3..4fe85ddfb7b0 100644 --- a/sci-biology/phrap/Manifest +++ b/sci-biology/phrap/Manifest @@ -1,4 +1,4 @@ AUX phrap-1.080812-fix-build-system.patch 3600 BLAKE2B 29a7846cd6394d17b35e525220b8ead461a22ab0f1301ae5668da36605649c07f23040c4c134424802d4da6e0c3b48fbbb05ec5708de50b33f024e4ba702ac49 SHA512 536ad862b9b8ce0fbc7ab67bc48db597e7d4b8c66018a5abefe5a59f4fbc30a4a76c94f4c13f5af7d42a422a22f5181d8f015b797d37f175238c3d4170adf21c DIST phrap-1.080812-distrib.tar.gz 317350 BLAKE2B 9cc53d05184b4a55a9a80e6112498f91a622b98a853b255daedd57c892b7c2bb8ef3091ed3d141e297864c158b7e03d02313a272448d2e0fb80e1c51a906e00a SHA512 6b125b9a99b6180eb5de16bccfe068abefdb59237fd3295924c418749f2f2d6e39cdbcecc6786e42738846975334c4d8a645eae8fd0fcbda6b0e99241deb15ca EBUILD phrap-1.080812-r2.ebuild 962 BLAKE2B 42c56565cc83f792878f8dac26badf57a7307d63dae27684a7799c6607521b5e564d0b21f49a7669ed291e0facd502b9745aec1a643226e9ac9ec8e0031d9d76 SHA512 abbc494349976d3a6371a424b4a6bce60e30f7963db4d05976a59c88cf0def994b690f8746d34db683629eb171322ebbcb2aa9325e746adeec9afd575468bc92 -MISC metadata.xml 267 BLAKE2B 7cf386952842945148119de3263231db4d1046d5f54811f7e303ed8ec4d27cbc1960b99c92daf6f32e5b981c2fb9f50ec666be6193865d6e18541b7427a152a9 SHA512 91ab266d9ab24401bc0fec759c5b6cfcf44a3c5669fc31c7301d79770839bb5dfa0e155d949392ef06176b4a0b2c32b91b1b54b0027f972db61f0a5e54644403 +MISC metadata.xml 268 BLAKE2B a4d67334cdad8626d60e46b677ee1c83f569e5e20b3739a7664bb33be1829f8478af35e135bf734a6ff151b8543ea6c4ecafbf822cee8189f7e7096bd9698711 SHA512 59d3d8213b1a219396b74b6f4188c01e1cb4eb1c63e6792ce1e7fdb8000d1a4625919337ff77288ca7f7e07d9753f481d2381a06f554012633cd678194c980de diff --git a/sci-biology/phrap/metadata.xml b/sci-biology/phrap/metadata.xml index 959160fe46b1..ccdff086e20b 100644 --- a/sci-biology/phrap/metadata.xml +++ b/sci-biology/phrap/metadata.xml @@ -1,5 +1,5 @@ <?xml version="1.0" encoding="UTF-8"?> -<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<!DOCTYPE pkgmetadata SYSTEM "https://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <maintainer type="project"> <email>sci-biology@gentoo.org</email> diff --git a/sci-biology/phred/Manifest b/sci-biology/phred/Manifest index 4b01262916ef..161f89dffb9d 100644 --- a/sci-biology/phred/Manifest +++ b/sci-biology/phred/Manifest @@ -2,4 +2,4 @@ AUX phred-071220-fix-build-system.patch 1981 BLAKE2B 0c9ae75ecf54eadd1d6cd3cfeed AUX phred-071220-fix-qa.patch 787 BLAKE2B 79f687dc1e51dd51e9f97886e0ada9b515d7e4255dff0ec3e81dccb2103ba8b4bee691c8a5b9a321cbdde5576fe8d80dbadafdb740c2cdee81fe9748255084ab SHA512 27811a834358d0e1bf8281882e0420e0eb6bd9586871c8c72a4de79badc9539ea8e9258b9c3a3bf8ca1d3f6924d61abce2dcc0c0ed3b64e5fa53d4548109f5bc DIST phred-dist-071220.b-acd.tar.gz 357767 BLAKE2B ae1180f54eaa3631a4e32c2ffe388b35745302e3d014c8fa893119e7e488d4bb4316f7ee0588cd12db5cbbc23033f689f4a0a487cdc7fe42e8c7a67ceb3c43ae SHA512 0a6b0a733e6dcc0495eaab720b75f8e5815df494d0a773b8b8336d5208321c2ba475921084835a769367ec51aed156585ab97346a510100d4337e3215ec75276 EBUILD phred-071220-r1.ebuild 978 BLAKE2B c2262024808c5f0fe203ff301964ae0b546de279199cdc1ed9c7ab3ee89e5d68f6285e4726bb9a28f8e22091c177918103dc06cde7501e7ce2b4ee5b78f313c6 SHA512 f66790ce585e4747c4db2eab8cb4c2be63da903510d64bb395ec74173a8b150524ed7ae1149ccd78876dfafb59bbcf2572cbff3bd5b4cab8642112b26a151482 -MISC metadata.xml 267 BLAKE2B 7cf386952842945148119de3263231db4d1046d5f54811f7e303ed8ec4d27cbc1960b99c92daf6f32e5b981c2fb9f50ec666be6193865d6e18541b7427a152a9 SHA512 91ab266d9ab24401bc0fec759c5b6cfcf44a3c5669fc31c7301d79770839bb5dfa0e155d949392ef06176b4a0b2c32b91b1b54b0027f972db61f0a5e54644403 +MISC metadata.xml 268 BLAKE2B a4d67334cdad8626d60e46b677ee1c83f569e5e20b3739a7664bb33be1829f8478af35e135bf734a6ff151b8543ea6c4ecafbf822cee8189f7e7096bd9698711 SHA512 59d3d8213b1a219396b74b6f4188c01e1cb4eb1c63e6792ce1e7fdb8000d1a4625919337ff77288ca7f7e07d9753f481d2381a06f554012633cd678194c980de diff --git a/sci-biology/phred/metadata.xml b/sci-biology/phred/metadata.xml index 959160fe46b1..ccdff086e20b 100644 --- a/sci-biology/phred/metadata.xml +++ b/sci-biology/phred/metadata.xml @@ -1,5 +1,5 @@ <?xml version="1.0" encoding="UTF-8"?> -<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<!DOCTYPE pkgmetadata SYSTEM "https://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <maintainer type="project"> <email>sci-biology@gentoo.org</email> diff --git a/sci-biology/phylip/Manifest b/sci-biology/phylip/Manifest index e32039f426a1..3ff2d9d0d7ea 100644 --- a/sci-biology/phylip/Manifest +++ b/sci-biology/phylip/Manifest @@ -3,4 +3,4 @@ AUX phylip-3.698-fno-common.patch 1934 BLAKE2B 613149dd930aa3efc921d5844e97c7647 AUX phylip-3.698-makefile.patch 9481 BLAKE2B fc8b863c05953333588f174251e40a86138a5cf2b08206861bef594ebea1d7d63b53895517bb6916e1c06c700b379cd93e76a673af4ec225502ac886dbe702d5 SHA512 6713644543f676dd6b21408675ac65c38f6a2fed4bd04619c19de881e5269e4c0bb89e440cf59dd0f1f13ad72cbbf420baccdaeb6a0c7a2a807895f87376d76f DIST phylip-3.698.zip 9675991 BLAKE2B 8d020cf17b3245b9827af4bdd1d17167c3e1a41ae805766c4b72f09de107775314a2a296c00f84f928487403cc02741fd46ae73585d0dba143f4b926777e9add SHA512 7f822dabd1ffdb6a689e0c308f5a3ae129bd86e305086a18c0c755ac3c6ca28a4337d52ced76b280706926370e23f19f304851ef82e32833d1945ed277f7d70d EBUILD phylip-3.698.ebuild 1192 BLAKE2B a91ddcba5b9ab2edfe4a3a201c640c72f0b6b51f79ddcdf81c133807cf0f12c17e4c591dd470391fa494e1d0ce1e115cc3c4b09a0165235278a8f8ec0840524b SHA512 652292c5969d9fffa6b99c3db183a58d09b1f24eef1be4269492f5bf97d6e2cb795103a8791355cea18bf4cdcf60f91c5a96cef364865aadd7b53a3a8de94494 -MISC metadata.xml 267 BLAKE2B 7cf386952842945148119de3263231db4d1046d5f54811f7e303ed8ec4d27cbc1960b99c92daf6f32e5b981c2fb9f50ec666be6193865d6e18541b7427a152a9 SHA512 91ab266d9ab24401bc0fec759c5b6cfcf44a3c5669fc31c7301d79770839bb5dfa0e155d949392ef06176b4a0b2c32b91b1b54b0027f972db61f0a5e54644403 +MISC metadata.xml 268 BLAKE2B a4d67334cdad8626d60e46b677ee1c83f569e5e20b3739a7664bb33be1829f8478af35e135bf734a6ff151b8543ea6c4ecafbf822cee8189f7e7096bd9698711 SHA512 59d3d8213b1a219396b74b6f4188c01e1cb4eb1c63e6792ce1e7fdb8000d1a4625919337ff77288ca7f7e07d9753f481d2381a06f554012633cd678194c980de diff --git a/sci-biology/phylip/metadata.xml b/sci-biology/phylip/metadata.xml index 959160fe46b1..ccdff086e20b 100644 --- a/sci-biology/phylip/metadata.xml +++ b/sci-biology/phylip/metadata.xml @@ -1,5 +1,5 @@ <?xml version="1.0" encoding="UTF-8"?> -<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<!DOCTYPE pkgmetadata SYSTEM "https://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <maintainer type="project"> <email>sci-biology@gentoo.org</email> diff --git a/sci-biology/phyml/Manifest b/sci-biology/phyml/Manifest index f06bde360504..dc8d479c191a 100644 --- a/sci-biology/phyml/Manifest +++ b/sci-biology/phyml/Manifest @@ -1,4 +1,4 @@ AUX phyml-2.4.5-fix-build-system.patch 1735 BLAKE2B 2ba677db3b00cc1ede4701652cd854aa8f92bc545668fae50add726fc5ddcc0694dbac7189216816026433d5c25864c819c77a887a03f6a75f111084611b6689 SHA512 95079d00d4a7373f9b6f9b17b707ae999db38a341e03f96b5f1b023ea4fd76a4027f6a46c6e33ecf7902ab4dcbc22d199b5c0f75a7b0059c90f7c11fbc9146cf DIST phyml_v2.4.5.tar.gz 92143 BLAKE2B f95b6b5023cd9b68e92e600edd9ee404bdec717d0b1e748c9e4f4667d732a23469762b847e4aa3c36e5cea7ce1d663ade031ec996cd6449ef1cf2fd55b96b2c8 SHA512 119716290eca0de4da05b0bacbec96139f4c89f6a033b861d1cb2655a620766bd0bea0675c4d7722a31d888652a28bf3544a643f39f11682982ede80dc5928c3 EBUILD phyml-2.4.5-r3.ebuild 538 BLAKE2B 430bcdab15a89b251245b5ceeb41f55a6cdc115c76cfb9ed5ec4e36eda0a83cdc98dee1b19c883f371235817d8e7bb213618065b2a377eeaf876c5715c06f54d SHA512 72a9907fa91529e696da775b9b99282c3df09e79d01a793601d949a593c05870ee0086c596fded675c1ef485f2d3a8d618447493ce90a786015a85a3848ec7e7 -MISC metadata.xml 563 BLAKE2B 891c35022d17a97024719e2efef139cd60c02923da274ba0f4a22f1cd0302f40cf51beeef4568758637a3114fab8640bc1f906a6dd505206e3b744df062839b0 SHA512 261bcfc822594f4d59215387d3878849543f6e989bf692f33bdda90aacc9bc03dd5933fd86e99534047b99440093f1f263af5f4b4940d3e05800ce90bb4e257b +MISC metadata.xml 564 BLAKE2B 449bbc55fcabbe9a9fea66017ff48bdf5075345496d6cc9abc6a53966245c00894093b0852eaf1a74f6746db4093d8a3be36a4f9e00b6a245d38716b146247a2 SHA512 89b24d285a76e7826563f631b991ea871c7f4e5c2048ab47cb8d1d028abcf817b5e582bf93d3ea122b019e4b4a49f386f3d95f6103bf39c0979b5f6a3c19b791 diff --git a/sci-biology/phyml/metadata.xml b/sci-biology/phyml/metadata.xml index d4e4a77f868c..e8a2d7c4a3b0 100644 --- a/sci-biology/phyml/metadata.xml +++ b/sci-biology/phyml/metadata.xml @@ -1,5 +1,5 @@ <?xml version="1.0" encoding="UTF-8"?> -<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<!DOCTYPE pkgmetadata SYSTEM "https://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <maintainer type="project"> <email>sci-biology@gentoo.org</email> diff --git a/sci-biology/picard/Manifest b/sci-biology/picard/Manifest index df4b520ca2aa..82fc7ef9c66e 100644 --- a/sci-biology/picard/Manifest +++ b/sci-biology/picard/Manifest @@ -1,4 +1,4 @@ AUX 1.103-gentoo.patch 5667 BLAKE2B 7d096dfb289a121a9e4cd27614dbf106fcbd17ea39666dd11508c7e58ec098c653c6bfb60ce69f173e3da25963c5d7335affb659566cf43d26f287d2898c37b2 SHA512 966b0cc9ffc5bbf4b23c003538e01533344df496c38797ab84fcd2b382e91e003cc797a0c6ff5a878406b1fc169c1b044bce447b68770c665cec327762f08f6d DIST picard-1.103.tar.bz2 15037887 BLAKE2B a4df3aad9242749964a997698d80634e14ce19af575de9609655483eba247d0968cbdc856dbf00d854ec7eae37da8f3d047c50e4b78843e9d08441d9ef18eff6 SHA512 f8db38a8fee278868cd2ea11f78275a5defadf36e053703133f0f90836df8e3a3ca08635fd7c02967ed99b52bc5baffa600a34b58a94288d3eede7f5c3dd79ca EBUILD picard-1.103.ebuild 1513 BLAKE2B 1755995201677c74108fbc0af289b46c1c518a620b87019adab0f90dd2fa6abc5a4d0135f2883f9716aadb96f60b76199fba109292ae4ff65b29dac82023e119 SHA512 e731bbabeed2d16707ad900a8a271143542c3c851c4becd240d79158b2f806bf5a4faf22b7c466427c406392faefc51628be621ec5b2d429a47a716d003a66c1 -MISC metadata.xml 337 BLAKE2B 1849aa02406f03615330b7042432725da8209ed77f86fb3590b60501f0fa9093c76ce03ec4317f436ff2bd6ca8cdeaa3baebeb8729eb8e21272279bc7f9c6d8d SHA512 4eabbbfda109fb6c57df99156ca9dc48a05088a40f02276c654341e91b010ed2cc93ddf0da1c3ca0870ffcd8b82fbe0f0dc9d165f62e671fb88af6d25e8de661 +MISC metadata.xml 338 BLAKE2B f32ddb3924bbd34ae207756d7e9b17715cd1b0a87c079201d628cb851c3f1bea487d6953548e1b820148900d0ae2d056ce55408d5d84a4a8f798440b8e4e8a53 SHA512 17119585510e7c19ded9131b140b21c9ae9773e6800d1c2ab56401d15ca995fec7ea3db71d231fc1c90e9f1a22bdc3ed01506fff1411221675c669febde9736b diff --git a/sci-biology/picard/metadata.xml b/sci-biology/picard/metadata.xml index 34f79a25054b..22fd62cbaa79 100644 --- a/sci-biology/picard/metadata.xml +++ b/sci-biology/picard/metadata.xml @@ -1,5 +1,5 @@ <?xml version="1.0" encoding="UTF-8"?> -<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<!DOCTYPE pkgmetadata SYSTEM "https://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <maintainer type="project"> <email>sci-biology@gentoo.org</email> diff --git a/sci-biology/piler/Manifest b/sci-biology/piler/Manifest index 4ca77b47e516..c25e1ad20625 100644 --- a/sci-biology/piler/Manifest +++ b/sci-biology/piler/Manifest @@ -2,4 +2,4 @@ AUX piler-1.0-fix-build-system.patch 685 BLAKE2B 8df7772012b8809599d0c80d52ec608 AUX piler-1.0-glibc-2.10.patch 386 BLAKE2B 758ba0e13cf114998a78866ae4ba3b11cc27aad09f17db84ed7b295c14ccbc15e8446b49bfc425f0ed92c694e16dfbee33ffe9cc0618bbb92c142d4d0c1628eb SHA512 0773c9b6c2eb289c8dee3cc8db6ec0250cd8df3b9e5e729305b58b28db64f486571f2f54041c84d178bf984cedfb4d9941c5abd47f772ecdf29e9ec0bdb55fcc DIST piler-1.0.tar.gz 35220 BLAKE2B a3a5d9ab6885e0900c523db9d1248888cd3de50b18c2c4ae110a13d792a0faa60eefffbac4526df96b482b4fe6ed8bd19299eb96380332a57f2d60330ca40037 SHA512 35be1b445f1eaf26f96d0356a04d985fb528754677403df2061c0872107d31819c5fb355e7f616e953a997e67ce781846acaf3cc2a016097aca785b6a26de3d4 EBUILD piler-1.0-r1.ebuild 660 BLAKE2B b05e0c65d483624d517ac6155087435cac128c088c14ed7df6091423c88353209acb96c258033bf43bf5983d51ab88aabec78dd9b955646a325a482ee7f28197 SHA512 7a8b1c64559477101989e3a97eb8d0aa3b6e520df66b0f43a97f2531a2de7fa77acb6b9e6066ab0ac46668cd23bfa9357cebbeb5c610e67f3d757e53e5ce97cf -MISC metadata.xml 267 BLAKE2B 7cf386952842945148119de3263231db4d1046d5f54811f7e303ed8ec4d27cbc1960b99c92daf6f32e5b981c2fb9f50ec666be6193865d6e18541b7427a152a9 SHA512 91ab266d9ab24401bc0fec759c5b6cfcf44a3c5669fc31c7301d79770839bb5dfa0e155d949392ef06176b4a0b2c32b91b1b54b0027f972db61f0a5e54644403 +MISC metadata.xml 268 BLAKE2B a4d67334cdad8626d60e46b677ee1c83f569e5e20b3739a7664bb33be1829f8478af35e135bf734a6ff151b8543ea6c4ecafbf822cee8189f7e7096bd9698711 SHA512 59d3d8213b1a219396b74b6f4188c01e1cb4eb1c63e6792ce1e7fdb8000d1a4625919337ff77288ca7f7e07d9753f481d2381a06f554012633cd678194c980de diff --git a/sci-biology/piler/metadata.xml b/sci-biology/piler/metadata.xml index 959160fe46b1..ccdff086e20b 100644 --- a/sci-biology/piler/metadata.xml +++ b/sci-biology/piler/metadata.xml @@ -1,5 +1,5 @@ <?xml version="1.0" encoding="UTF-8"?> -<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<!DOCTYPE pkgmetadata SYSTEM "https://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <maintainer type="project"> <email>sci-biology@gentoo.org</email> diff --git a/sci-biology/pilercr/Manifest b/sci-biology/pilercr/Manifest index 797fc2e3e269..51b2db624bb0 100644 --- a/sci-biology/pilercr/Manifest +++ b/sci-biology/pilercr/Manifest @@ -2,4 +2,4 @@ AUX pilercr-1.0-fix-build-system.patch 673 BLAKE2B 53bbafb9d1433e78edb3568db8e1a AUX pilercr-1.0-gcc43.patch 854 BLAKE2B 2e3ffba380df1522f28eab7e48103d6c56d1548db3eb8622e9e5f77c098d420858b1f9ba656593f949454b43f2cee5d7a79cd9d2fe712749cc481f4f1dad61d9 SHA512 7e83a1c29f2b6b11e101ffebf99516c9da06f7fa7645aa619a89c365dc89d6ea2659d4610eea25b6e260328b56320e6d720f3d0d67a01aae450104fc9513d58e DIST pilercr-1.0.tar.gz 1709144 BLAKE2B 59aef12a10d168c8cbf4d3b3eec95dd4cd47b0ba073f19bd9f3954e6fab088af1c9f0328b0120c219034be07e4d13af4df17ca3eb7f40c19ff2a13d72000251a SHA512 c262ceef1d1af9e71f454809e940c2ad6d835a8404daa51ccef698b8348a504c697f5b5c268ec24df611f5adda2932e4982bcdabe4fbdf99d8c204f0f77f1be5 EBUILD pilercr-1.0-r1.ebuild 594 BLAKE2B 591e2bdd45588279fc347ac5a31519b3e108bb29bc548b42a432e8f3c8fc73d09f195a5cfe66bac80ac825767a81a8e20814a9e867fbcad35e082383a107ef41 SHA512 5841ff12c7fa7d2290b2310aaba5fd0ec2688e5364e0f973314d9eeb6641fe43d0ff30374bc327f3d6152fd81476424f423841adac6d52656690d0a12090119c -MISC metadata.xml 267 BLAKE2B 7cf386952842945148119de3263231db4d1046d5f54811f7e303ed8ec4d27cbc1960b99c92daf6f32e5b981c2fb9f50ec666be6193865d6e18541b7427a152a9 SHA512 91ab266d9ab24401bc0fec759c5b6cfcf44a3c5669fc31c7301d79770839bb5dfa0e155d949392ef06176b4a0b2c32b91b1b54b0027f972db61f0a5e54644403 +MISC metadata.xml 268 BLAKE2B a4d67334cdad8626d60e46b677ee1c83f569e5e20b3739a7664bb33be1829f8478af35e135bf734a6ff151b8543ea6c4ecafbf822cee8189f7e7096bd9698711 SHA512 59d3d8213b1a219396b74b6f4188c01e1cb4eb1c63e6792ce1e7fdb8000d1a4625919337ff77288ca7f7e07d9753f481d2381a06f554012633cd678194c980de diff --git a/sci-biology/pilercr/metadata.xml b/sci-biology/pilercr/metadata.xml index 959160fe46b1..ccdff086e20b 100644 --- a/sci-biology/pilercr/metadata.xml +++ b/sci-biology/pilercr/metadata.xml @@ -1,5 +1,5 @@ <?xml version="1.0" encoding="UTF-8"?> -<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<!DOCTYPE pkgmetadata SYSTEM "https://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <maintainer type="project"> <email>sci-biology@gentoo.org</email> diff --git a/sci-biology/plink/Manifest b/sci-biology/plink/Manifest index ba6392685d12..ce949305186d 100644 --- a/sci-biology/plink/Manifest +++ b/sci-biology/plink/Manifest @@ -1,3 +1,3 @@ DIST plink-1.90_pre140514.zip 822157 BLAKE2B 3c29670862de99c9715bc37d8cffc2b02c0cb25ad746975f253ca1e8094b24668cc6739943c68bfa407471f30835a74c6ad027eaa56a92f13445e0a02854cad3 SHA512 679f1e136b11f35f1d49636bc44ffd17e72e4e38edc5daa270cd963ca39f7b8a80f31905a94de517059e5b3ea7a6bf518ae34a5c2af8a05c530bd6df771606c4 EBUILD plink-1.90_pre140514.ebuild 1165 BLAKE2B 0b8e58c958acde62b0f59fd81917b088ec997ab877e1c8d83fe917d9d2df5b715a9634d5f69c1263a51090829a8eaa88a553e2980bbcc6d3b6936336705af03e SHA512 c73fccf66c5d11a72657985172c8fbf1b89107fd46a519474dad167f1279c0f6a976b0096e3d550fb2b9835980aa02ad81c68a819b3aec036faf60b341acf9d2 -MISC metadata.xml 261 BLAKE2B 3768c926bca545090342a947ba83e706a8954c51b99a5e7b3476ba5198cd326fe1c3b8efb51dfd6be1800682556b8ceea065e388981463ab32f3d687951872f3 SHA512 537da0d3aa2741ebe4442d5dd9b53409decfc9d12ca8e5af8e737c4deb2910c884207e2d441025d19469816100889f04c11038bdffd6a1a15c6217495445090a +MISC metadata.xml 262 BLAKE2B adaacf2ac22ce09f8b1b68f538773c1e2101156181ff302eca2ce1280ee5d45db4eb302a8eee1bbead5e55942443dd16ef924cfbfdc95a1658dc6a9f460468a2 SHA512 ac924b6b530d96645f173d40f7a2bf0e3abbf49048ebf7fadcea3dd553cd25504f0e68a103395de1fb59a2e5e11497dcead601be01cc6f0295ccbc4155f67e3f diff --git a/sci-biology/plink/metadata.xml b/sci-biology/plink/metadata.xml index 8417d1580d40..bdabd1d83788 100644 --- a/sci-biology/plink/metadata.xml +++ b/sci-biology/plink/metadata.xml @@ -1,5 +1,5 @@ <?xml version="1.0" encoding="UTF-8"?> -<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<!DOCTYPE pkgmetadata SYSTEM "https://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <maintainer type="project"> <email>sci-biology@gentoo.org</email> diff --git a/sci-biology/poa/Manifest b/sci-biology/poa/Manifest index 7b85951ec539..b9b4d77ee43b 100644 --- a/sci-biology/poa/Manifest +++ b/sci-biology/poa/Manifest @@ -2,4 +2,4 @@ AUX poa-2-fno-common.patch 357 BLAKE2B 5d239201e987f1fc45e82019a27b2c8e81015cd2b AUX poa-2-respect-flags.patch 874 BLAKE2B ee278cdbc6ec0603bc28087bd008caa70fe39668360a1473891ed997bde93f31ef7586acc9137a23a4d3123047ce5b600c3d6418a89e1e62ca70545b99a3112b SHA512 95e2e7c43ba18f9238b379ea13d3a6004cf580c75d484dbe43f01c823484f84eb93c3d2fe1ae3c98583c51c660ab24e6dc580d132649adedbf30d8675d8107b0 DIST poaV2.tar.gz 62612 BLAKE2B 92f7b2926dd7fc93745411fc04c8dd3380c32e3e87cf89afa81aefe787a1aa0e7a416d08809cce531a21d5118398a9474a751a742ee1fca47e83bd907444e9c0 SHA512 2a54b025f0a74ff4c01828f3e4b9e8e135bffe26d08f651f981bc95a64196173b5d887ef988a25c1f5fbf89333b4771622d5dc93946d66e7ec9abacb6167595c EBUILD poa-2-r1.ebuild 857 BLAKE2B 436c6a4db2fa826ebb3f0a3d59df5d88f746a6c025f227be6b4916f7b6b34dde51013ae48355ea080dc19ba763972e62d3b1a87b17c19349ba0f3ed2df50409c SHA512 7fadf68dd86ac01c83eb65ef6e8512428b7c5fa84b1071f538458e46ff3116d02ff4f18a7d8e2bc32c360caee2bac2ca998a3a824442f662613a8808e893e7b7 -MISC metadata.xml 347 BLAKE2B f003b9e0541ffd38d84b2daf8b4df59bfbec1510ae162ac42af1cb1cb110f19297074d61b9b84d71441a0ceba9acbd38123db467e8500c482165fcd6c7e7b90b SHA512 8610e747bbc86428757f77ed688520cdd9efeabc08e08f99ce74d98e7763f3f8cb7648b1eea01bc4db79ae16a650cb119b82022d1ac41e8fcbd6a6b40385e580 +MISC metadata.xml 348 BLAKE2B a159034e493b50e7390db0516a4f478d14877323a256152eb9e596251cc71b161a38f9b740313f015ed2ef1757d0110d7e368eabf37b0e295d063d3770708ec7 SHA512 6452fa4eda03932e1ddfb7ac88b5b5dd4ea5429767ea06d1ac4db1df87e88159333a7c817f101b34975d20cb35d0b62f8947d658eba47ab917c0ecfa106f29d1 diff --git a/sci-biology/poa/metadata.xml b/sci-biology/poa/metadata.xml index 229e2f246a80..1029a137f48b 100644 --- a/sci-biology/poa/metadata.xml +++ b/sci-biology/poa/metadata.xml @@ -1,5 +1,5 @@ <?xml version="1.0" encoding="UTF-8"?> -<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<!DOCTYPE pkgmetadata SYSTEM "https://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <maintainer type="project"> <email>sci-biology@gentoo.org</email> diff --git a/sci-biology/prank/Manifest b/sci-biology/prank/Manifest index 9cb5b8602db9..4427ad05c7e0 100644 --- a/sci-biology/prank/Manifest +++ b/sci-biology/prank/Manifest @@ -1,4 +1,4 @@ AUX prank-140603-fix-c++14.patch 395 BLAKE2B 9b0242c22bbe87b39da73aaa3639c286601f96b06a75b8bacd7a305dbbf9dc0a5cc6b054ccb05984313ac14c7e9852d2dcbe36150ab4d224e48aa6e72b88bdad SHA512 a7ac7e9e8a138a2ce103302a92e936ab1c0b15c72ac8cdb2aae26c8767e764b42b048d40c436cfd21b372ae471706852ca23b41150578bb83ebbb13a7b7ac014 DIST prank.source.140603.tgz 150346 BLAKE2B 4bd5ba1d2f5106a20f51be359ddfc2421ef6c5ae235bf14dddf6fe82745d3375074ee213e957ef290edeae124c070cf14d6674765ebebdafc0a726a037ed269f SHA512 25e5f99a3822ff31436406f9ba1c781ba375959e1ed452c1e7416898d5246183510ec6d2bc715ff1495a779e42d7bd1d49ad1c332e1bd5982dad8c744ad999c7 EBUILD prank-140603.ebuild 739 BLAKE2B d12e2aae28462ed6682d92ec36852e1ef137578119dcc4b2e0933f90b0dabb12c2ce35a55895049cb6aecdf4b4afad5b8446562c93db977b5197fff2daa1a16a SHA512 81240472088098b2f2685e8a433a527d06a1efdb51edadc17380738700c1202097e5392ad06c13dfef2b554f08bb5a54b0b3008bd9329edb4f363e2688e62dd5 -MISC metadata.xml 350 BLAKE2B 07e2ae0e47a165227aa3b180b153e57a446106628b48d86e0e03aa623463c62a7d35b6580e2f17ed8114e0bbb8384cebb459ca725f607d24050ef17e1effab9d SHA512 efa583ffdf5131a7d9c22eff1d294c2bf831e6dc71c4ffe3a8f1e072fb6230959ec95ea807e1672a0ac8026b49ac88ac178849a1c61dee0e6723edac28366a2e +MISC metadata.xml 351 BLAKE2B 836bd7063926bfd74a99679e881df736111f366adc3a2970631be11139148a619911ad5850acd3103ee2cc2441a35e00c2e8665d68653aa1a9ee85fd1f065ec1 SHA512 9ed02c4c733d0fcd6d1bda34272ce06d502e5a20bbd62b718a59e3043fbf8e5002606537b3eaf07d056545633449b78d334795a0a9828747e56934f3f9d96f79 diff --git a/sci-biology/prank/metadata.xml b/sci-biology/prank/metadata.xml index 8d1d75556076..2a0345f8b0ad 100644 --- a/sci-biology/prank/metadata.xml +++ b/sci-biology/prank/metadata.xml @@ -1,5 +1,5 @@ <?xml version="1.0" encoding="UTF-8"?> -<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<!DOCTYPE pkgmetadata SYSTEM "https://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <maintainer type="project"> <email>sci-biology@gentoo.org</email> diff --git a/sci-biology/primer3/Manifest b/sci-biology/primer3/Manifest index 75cde6014283..a8ab456f2e41 100644 --- a/sci-biology/primer3/Manifest +++ b/sci-biology/primer3/Manifest @@ -2,4 +2,4 @@ AUX primer3-2.3.4-buildsystem.patch 5460 BLAKE2B 1e7680501e9c4a74c599f52caa78775 AUX primer3-2.3.7-gcc7.patch 421 BLAKE2B 3f861ecb493ce9673cdebac9ea224a0588bd3b758d72a7ef4e41d4efb929db444a8c2808a55ead42dcb174265a926c021a89dd83dc8a1e5ba4eb5ed26280be43 SHA512 c818cd80e4762ef46e4e52acd27f4eb966d676995154b3503c98d8defb545c3dd7ea307c8946b5b5c462dd7f5dee6abc254cea59e21e2229cb779a7178dec04d DIST primer3-2.3.7.tar.gz 1658090 BLAKE2B 0bc9a0faa19c4ac3b48680d65b0d91a13d8bdd651ad3a0d344b4f50ce8dc510fe7a22665192751fb2c8ff6282b560daf4540a02cc70482dba0fcc344f7727e37 SHA512 f227f80d395cb682a9d65e0ac3afdcacb8385d66e721b9163fda939a9c788a7c6907273f6223782702b48d7df66ea2331114f6303fcd29e3b3c50a2717da2fa7 EBUILD primer3-2.3.7.ebuild 1116 BLAKE2B 1aff6985a9ad3ad0ee523f18061c7f31bd26d3cc6c72f440a15c0ae2bc21f84ad360f51b021079efde09ef386f1c92f4dec7d155b970247e9ee87c376e0b36ee SHA512 56b127a7282b1c9dcc514758899d46e23ad79178f402beee270a03959eb01ae28e03720fba1c4dfbfc050e2932a15f5e2254705a048acf8ef8f7db0998327e61 -MISC metadata.xml 797 BLAKE2B 169e1065192fa4173181d9ee76a95ee83aefd398627ee65952eb14c3d3db93910c3d2239fe5ca7ce7c68f00e005bd7902a150640b85143f0f9d53fec41392318 SHA512 3d8707f6c780f3bec419c4cdf8564bf3634c4b75e4e7dffebdc29684dfbe89d9404c405e5c7b72e32fc493517e8fa36137c7a6f2b237f788fc6fb46ca43d2f7f +MISC metadata.xml 798 BLAKE2B b57850f7ea949d9e026fba81ffb483b542f725aa96477b013ac635ef058c42fa925cc104ccac89e07cb655939364effc5193c9665264145b6d892593c133856a SHA512 1f1541c1a632b9ad37359bb60cb7e4fa4e583d9eafa10f9ec43450c30ade6ae88289ca62c793ec63da376306ab383b399ff4ab89483bcc43588aab78249100f8 diff --git a/sci-biology/primer3/metadata.xml b/sci-biology/primer3/metadata.xml index b80de21c3321..af82be55b453 100644 --- a/sci-biology/primer3/metadata.xml +++ b/sci-biology/primer3/metadata.xml @@ -1,5 +1,5 @@ <?xml version="1.0" encoding="UTF-8"?> -<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<!DOCTYPE pkgmetadata SYSTEM "https://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <maintainer type="project"> <email>sci-biology@gentoo.org</email> diff --git a/sci-biology/prints/Manifest b/sci-biology/prints/Manifest index 27e3a43aa076..aff9f9a9349a 100644 --- a/sci-biology/prints/Manifest +++ b/sci-biology/prints/Manifest @@ -1,3 +1,3 @@ DIST prints-39.0.tar.bz2 26277011 BLAKE2B a815e93f41694c76d62c6809f05457b286333ad103852eb493b0e723c54a088825f262a64ff8db0e47ff8a97c37fbf670c6c7967aabb303fd7d454982e4dff5e SHA512 4ea48a2a0892739ac4e32a6309922b7b4ad01f9d2f847f7c42c7e6a00e8f56bab0771d272adcaed1f85516ea93245fb8c7864762c4699023a8d85d61c012bdc7 EBUILD prints-39.0-r1.ebuild 1044 BLAKE2B 607892ae4ae91c40570da9f3d8cf2f422f404a05b2bac7afbde751c011c88545092464e0661e80fd4f2852d4f0fccb9565483f6bd1cd3e828290c5595c7c14dd SHA512 056458b00dbcee0f8720e1a74512ab513836d3ec762cd0b764c4fe3c2a8f450b76af21bff93e75fd37d0b00317bac7087c24032683125b26bbf9699b62f9cf9d -MISC metadata.xml 883 BLAKE2B c5b856f6f033a4bdeec05454f4c4ce768f31b6594f240211cb845d7b6b09b10d8c23576d95d9f43a48c1b2e17708c45786673d9b6cacd63957b019d878c82550 SHA512 b90e950d75cdea30ce5a8e073a02b1d60d0a02512ab73979d23f6dccf591c8f74c5f98e3d62d49031b0a9b2dfbee213445a0efa890857061239379e9b3258c5f +MISC metadata.xml 884 BLAKE2B 2f44013f0925749670db4c405034f7aaa4bf2ffc4cab4cde22595489eeba2ebb03eb4a4c79a87d1b33d7bd89742c232940c313fd693c8551b2e670902ae1c336 SHA512 ce4a4c14cd10efdd051fa1089b8ef1692d56ee73f8755bf03dc8d28e88b4d8ee5c64064dac1bcc7f60a19eabd0494c0903708d898a59cdc99c725b8575c0d4cc diff --git a/sci-biology/prints/metadata.xml b/sci-biology/prints/metadata.xml index af3ff0786e0c..720b31a11b56 100644 --- a/sci-biology/prints/metadata.xml +++ b/sci-biology/prints/metadata.xml @@ -1,5 +1,5 @@ <?xml version="1.0" encoding="UTF-8"?> -<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<!DOCTYPE pkgmetadata SYSTEM "https://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <maintainer type="project"> <email>sci-biology@gentoo.org</email> diff --git a/sci-biology/probcons/Manifest b/sci-biology/probcons/Manifest index 0e374b576c6c..add7a8d4faaf 100644 --- a/sci-biology/probcons/Manifest +++ b/sci-biology/probcons/Manifest @@ -3,4 +3,4 @@ AUX probcons-1.12-cxxflags.patch 1957 BLAKE2B 5308ee19d8bec42bc23ba8bf6ee38b4d55 AUX probcons-1.12-gcc-4.6.patch 306 BLAKE2B 0b0dcba7749192be0361fcf2a0778e8a4ef168a1d867e9d1ccaa097fb75c8b580a255dacf25d1312e648bb623e5796370d695afd742304a06e2d18547ceac4c4 SHA512 f8a393cce2a860ea54aa18add7ba236aa43e21893925e4484b272190e29aa2dc27bf20b11edc5694446f027c6d8d6ff3c3f92383f0b0c8958b1b1d5b7564f828 DIST probcons_v1_12.tar.gz 43200 BLAKE2B db59a4472e5ea4ce1801ca74807aa1b1bdb2861a9e52f9b3a4297b37d048ecd6e34298cfd181523093f8fb1cd9a81285e58098bcdec6ffa32caa9cc1117b8b8f SHA512 ce061ea5cca4204d6e66beb893c1ba508f094b7ea3ee08196dc75a5443ebd0afca14dc8d7cd6c8da4ce1578b8750ea1981e5815408c0b122e8f97ec27b3bf008 EBUILD probcons-1.12-r1.ebuild 1132 BLAKE2B 1ed9f556e3d393ba41611b505cf6a8d682d747d7f0b93001793989d56c710564c77326cc704a50f80e3c9ca338f529f02bdd56536ef6f2083d51439de792640c SHA512 2a506f516adc4190e74d3d756a5a11779f1d06473e4daf132a34829cc9f07cdafa50bb1d3b908df984037ecef885698734c7c964fcd013b3af29e20e71158618 -MISC metadata.xml 267 BLAKE2B 7cf386952842945148119de3263231db4d1046d5f54811f7e303ed8ec4d27cbc1960b99c92daf6f32e5b981c2fb9f50ec666be6193865d6e18541b7427a152a9 SHA512 91ab266d9ab24401bc0fec759c5b6cfcf44a3c5669fc31c7301d79770839bb5dfa0e155d949392ef06176b4a0b2c32b91b1b54b0027f972db61f0a5e54644403 +MISC metadata.xml 268 BLAKE2B a4d67334cdad8626d60e46b677ee1c83f569e5e20b3739a7664bb33be1829f8478af35e135bf734a6ff151b8543ea6c4ecafbf822cee8189f7e7096bd9698711 SHA512 59d3d8213b1a219396b74b6f4188c01e1cb4eb1c63e6792ce1e7fdb8000d1a4625919337ff77288ca7f7e07d9753f481d2381a06f554012633cd678194c980de diff --git a/sci-biology/probcons/metadata.xml b/sci-biology/probcons/metadata.xml index 959160fe46b1..ccdff086e20b 100644 --- a/sci-biology/probcons/metadata.xml +++ b/sci-biology/probcons/metadata.xml @@ -1,5 +1,5 @@ <?xml version="1.0" encoding="UTF-8"?> -<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<!DOCTYPE pkgmetadata SYSTEM "https://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <maintainer type="project"> <email>sci-biology@gentoo.org</email> diff --git a/sci-biology/prodigal/Manifest b/sci-biology/prodigal/Manifest index 18d201537410..be235d3110bd 100644 --- a/sci-biology/prodigal/Manifest +++ b/sci-biology/prodigal/Manifest @@ -1,4 +1,4 @@ AUX prodigal-2.6.3-fix-build-system.patch 1004 BLAKE2B 5a0323f6f4440e5f45805e8eabc32374f7d47760fa62c426a776a6f5bb573f356241618fbb231522c05ad950b3de71f38787bf848049f4c6fa174726c9134ee8 SHA512 c96e93cbe344bbab43b03b0046b1bca5030f4a731a0b43ea4d4ee87d303502d172fc93975a9d7b907d6ea6beeb865113122e0e2cbca7d660290994bb8214a17b DIST prodigal-2.6.3.tar.gz 610934 BLAKE2B 54a75a694aec216da411717c29c8e896f064b4893d74fa1c736fdea3cd7bff98cb8d597cdbb96dd4cb2f0e82972c99b43eee8f2ddd8678535dc68c831dfd4e08 SHA512 6d6ec310143c50c0d65dbdbd26d6d271839bb23b1da376ecef20059731a9e643d631613eccaac2eb548b295264b9fe58c21b083f1511a6554912cb7d5351d541 EBUILD prodigal-2.6.3.ebuild 518 BLAKE2B 80e85e8507eed4b64fecf813c54f2fac707cb8aec21182f40ffebbe83ab867eab3243af5618eeb01fbcf1ac33ff06f3bc060ec78f245da1afa30475b2d4220d8 SHA512 44048cc1a61e2e7decd5b4dda026e4b89ba54decfb1f63ad3d378c3b8ebef707b3e3c2338108186be9a3f9400bca165f3331a1f1dd668345716b15c01189a0e1 -MISC metadata.xml 395 BLAKE2B 86e625480833e553198146ea3e8a8d6e347c5a307798c5e8cf1918a85f3a6ce1761535287d586ef6d0f0de08f13897af30c7eafa62e5fc395075f43cc0412f48 SHA512 baa75d5c2b96f8bc653af2691f518533ae87bc13179e0d3751cc120e2933eb758ed08f68163d6fa0a312ebc9e017163ed7f95b2ad3135464d87ac58c410a2203 +MISC metadata.xml 396 BLAKE2B 1055ca10c3eafe54022acbe3f9d6304d64e56938e7e2ffcdb6d1055b7b687ad1ef38240588bc524eabfd3971e7b5e21eaafc971cdfcb9c9c1e3a798dea6f20ff SHA512 ed9530c82222c10dcbe345636e9208f232d130e693efa9695979980c4a2dd0bac3f006b32d86f3cca1c925c00b1cd5607846bf94532919258f4ee80cefc450fb diff --git a/sci-biology/prodigal/metadata.xml b/sci-biology/prodigal/metadata.xml index ce618df82fe3..657774f9a8ec 100644 --- a/sci-biology/prodigal/metadata.xml +++ b/sci-biology/prodigal/metadata.xml @@ -1,5 +1,5 @@ <?xml version="1.0" encoding="UTF-8"?> -<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<!DOCTYPE pkgmetadata SYSTEM "https://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <maintainer type="project"> <email>sci-biology@gentoo.org</email> diff --git a/sci-biology/profphd/Manifest b/sci-biology/profphd/Manifest index e4fd19dff774..2a3dc34d3ab0 100644 --- a/sci-biology/profphd/Manifest +++ b/sci-biology/profphd/Manifest @@ -2,4 +2,4 @@ AUX profphd-1.0.39-perl.patch 376 BLAKE2B 16911d2f6952f9740f3cd16121bf6dab5e5571 AUX profphd-1.0.40-symlink.patch 793 BLAKE2B 98e5f001570522bb1643d3aad1f2497bd84035c932d19b1b9c90d2933b08eb7d2b6c1871b356205494494c8225fac3d6d697aaac6229885876c439679455f092 SHA512 7985c4743ade3b73a7fdd0c697c84c3b5fdcba3c33c66d1d6aab7d4493ca4d1197c4c438ef79f44667ed2c86e6ee9c789c36928430605aac6438d9e734e8c56a DIST profphd-1.0.40.tar.xz 4491592 BLAKE2B 2aa1e091c0674fa5318a075148a63b15354ecb6d8d6f7ac41d1d05f8bea17c47b6f37be707cc1c738e22342c26ae9be59cabf919610e5bffd5028fc587b2995b SHA512 287f1a548030e7978119788dffdf2529e0018cd772bc820e116f79ed10cefd440645424b56415333362098a1ed32f4841d3fd4069adede2a95968f81c63956e3 EBUILD profphd-1.0.40.ebuild 787 BLAKE2B 382eef046bb2eddcbd7e8dd8a798096f4719c4df589f8022c51cf07bc7e920c161b9c9dc8dde7ee92eca9d998cc98ddc3aecdcbaa3de533a42556ff2e382931d SHA512 c583b877a4c912e473231d74ec84bb25bcc9f6d90d466fce7b73b1701e205a2c2ab57039e12ad755b7f3a296e7d8b95f752bb308337d012084ec3ea3738a69d2 -MISC metadata.xml 267 BLAKE2B 7cf386952842945148119de3263231db4d1046d5f54811f7e303ed8ec4d27cbc1960b99c92daf6f32e5b981c2fb9f50ec666be6193865d6e18541b7427a152a9 SHA512 91ab266d9ab24401bc0fec759c5b6cfcf44a3c5669fc31c7301d79770839bb5dfa0e155d949392ef06176b4a0b2c32b91b1b54b0027f972db61f0a5e54644403 +MISC metadata.xml 268 BLAKE2B a4d67334cdad8626d60e46b677ee1c83f569e5e20b3739a7664bb33be1829f8478af35e135bf734a6ff151b8543ea6c4ecafbf822cee8189f7e7096bd9698711 SHA512 59d3d8213b1a219396b74b6f4188c01e1cb4eb1c63e6792ce1e7fdb8000d1a4625919337ff77288ca7f7e07d9753f481d2381a06f554012633cd678194c980de diff --git a/sci-biology/profphd/metadata.xml b/sci-biology/profphd/metadata.xml index 959160fe46b1..ccdff086e20b 100644 --- a/sci-biology/profphd/metadata.xml +++ b/sci-biology/profphd/metadata.xml @@ -1,5 +1,5 @@ <?xml version="1.0" encoding="UTF-8"?> -<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<!DOCTYPE pkgmetadata SYSTEM "https://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <maintainer type="project"> <email>sci-biology@gentoo.org</email> diff --git a/sci-biology/prosite/Manifest b/sci-biology/prosite/Manifest index 8b6172bf4160..9e438a2cf3f1 100644 --- a/sci-biology/prosite/Manifest +++ b/sci-biology/prosite/Manifest @@ -1,3 +1,3 @@ DIST prosite2017_02.tar.bz2 9234253 BLAKE2B e818ba766a0761336b3f06b173fe98133e3c6fd9ee21198234fdfaf711ac2bf6ee68513c073a09765b050ffdcfe8c8d83a2ae91b89558db18ac6039798201c68 SHA512 2b8a26a44d62d17108afc43a3ab65d024f76e41ea9c9f477024700621323d2606fcaec54411e1d3f4ddad40717ad9ce3a1989ffd92220e0d3c2acf70400d2e43 EBUILD prosite-2017.02.ebuild 981 BLAKE2B 6ec1b47ed30ef51891901ea2f67ec0e0729903672437824d0b06f05a8fed9083a750336190b5d396c91c7f5bcfb2fcec849889475a12dfd186351ac711122df9 SHA512 0f0c805052daa587cd8699965230fc36dd118b53855fe13ad8127b7556192778dfd05e21145b0ac13922cc84c3cab88c758f0f8fb874d90a3221e41e1169568b -MISC metadata.xml 817 BLAKE2B e6b944c3a297b0eaedfd5e3eca09e4c27f4f4b6f1dc7a93d66b5ab265f465c326b6cc1c26f167b41eb57c43f8c7835415dc91b6fa6f0a4b389b2a99582e435cb SHA512 28b74af20192bc861cf78d43e55264e84473e471ce6dcdc63f30c3b64d4727cd3e8db5b4934d79ece4a3d732263393264d9085e0e53ce16649a6269a3c40f8e9 +MISC metadata.xml 818 BLAKE2B 586074d5bd8c663a273350e8c6daaabb8a3e0b5db1c4b32e891612b20c03c354c3bacf8fe5469d80bac19580c9dbf7c78ffb23ce8acbeef7b3378e33ad488c2a SHA512 672884e4a9c279c2bef33494c8692ea475ca05010505c10c22564206575302dc3dd2beae96fdc588e1a539cceb5673b4ed49abdb8fccb5e1d82b9b6a805e22be diff --git a/sci-biology/prosite/metadata.xml b/sci-biology/prosite/metadata.xml index 59076478066f..496029464135 100644 --- a/sci-biology/prosite/metadata.xml +++ b/sci-biology/prosite/metadata.xml @@ -1,5 +1,5 @@ <?xml version="1.0" encoding="UTF-8"?> -<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<!DOCTYPE pkgmetadata SYSTEM "https://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <maintainer type="project"> <email>sci-biology@gentoo.org</email> diff --git a/sci-biology/pysam/Manifest b/sci-biology/pysam/Manifest index 663b1a4afe0f..66e54f590b92 100644 --- a/sci-biology/pysam/Manifest +++ b/sci-biology/pysam/Manifest @@ -1,4 +1,4 @@ AUX pysam-0.16.0.1-fix-tests.patch 1128 BLAKE2B 8e395496c23186b29622b8e87369f910326724b70b63f3eccfd6d4b6cea86abf8b34a712a931f205711e2c5a6e76c9572a93aa9bd994f915312c55dcc888da52 SHA512 e725143c72d04fc0e2e37e607e6d9b85b4c883bcc5a530ff3c92e3bbd45d7d7fb09c315766a19254bea2a19a2d00a5f64220094a4e9b1090e412b26ea489b530 DIST pysam-0.16.0.1.tar.gz 3294073 BLAKE2B 8df1c9b061b0d4b3962ff4b0e30f1589e02d7df41ce362bff861596d3599bf800bb16b2fa4de326fc07102dc7801b48c6b821e5d47e694a3536bec2c5b1cfece SHA512 5cebb9f3bc8dc6186a629e91423a3c8cb802af6529b943fcd880e056661ec6ee2a00de789cf144c9e40b9d1ef2459c0e06ce27a1b9eab8e2875d2087f275af28 EBUILD pysam-0.16.0.1.ebuild 1393 BLAKE2B 1b68d4d351483c8082905460185395d560a9c3157d10f2cb5b2eee76d8828e7e50252f1eb920b9411761c4081f11b293de2c87cede8e9d5e22b568cee0691cfc SHA512 b8e2b792eefbc12e30e51ae01fa48977dfd904abcaf7fcbbd5b5148da76fb5411d0b412f0f0aae060ddf462eb4b69269f362d00dfa1371bda4a38dcce0a6baca -MISC metadata.xml 441 BLAKE2B 5ebaa5fe4a74466956cb7c9857c3529ea4d9c2be144e255223037be07edd45f5f41f615f05213e070b40c45eb1ed0092779b58d093d38d0bfc042c2359dfe06e SHA512 f14e0b65a502ad891c77e1e568d16e5f7c0eaaf84a792e6d41f7aaad4a25b7b009fd5b86d443361f418221bc64bc7c32ba2a9ef72d4fae319994b3b8fb047318 +MISC metadata.xml 442 BLAKE2B e3d339868a09d8930ff6d83f414f8166ed283a66d83d5b0fed0031024db151b17b1347f5e015f2b9c2152a041e2beb70696362be9b4e3fc225078bc5c520ad58 SHA512 4b1d08c5524e1bb04129e0d38f0584654b34979024afd2cf15bd482654ca8fac9c82e6db0661f7370f9fefa6949f1291ba3c18a9dca5d5041bd6f76554fa33c7 diff --git a/sci-biology/pysam/metadata.xml b/sci-biology/pysam/metadata.xml index d9da2562da6c..734257e94f10 100644 --- a/sci-biology/pysam/metadata.xml +++ b/sci-biology/pysam/metadata.xml @@ -1,5 +1,5 @@ <?xml version="1.0" encoding="UTF-8"?> -<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<!DOCTYPE pkgmetadata SYSTEM "https://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <maintainer type="project"> <email>sci-biology@gentoo.org</email> diff --git a/sci-biology/qrna/Manifest b/sci-biology/qrna/Manifest index 533808de8b3f..0a948e3e7f83 100644 --- a/sci-biology/qrna/Manifest +++ b/sci-biology/qrna/Manifest @@ -3,4 +3,4 @@ AUX qrna-2.0.3c-glibc-2.10.patch 7571 BLAKE2B 3361fa6c31af0fa7f01e3c32bce2a8570d AUX qrna-2.0.3c-ldflags.patch 18533 BLAKE2B b4901278e494d75895efecf9808e119307ece785437dec6c0776154665205d22cdd95be8526fbdf6f717e45613776b778b6c4a4f7561b3ec4e57ffda1547212e SHA512 6090e90d1723001dcda9a613bb13387bb6cf1b33c1692d4ea40efd1e14bce792779bf6b9acf3eed964c9432f49d2325e4bf910c87cc076e2e7a9329b4f9371d9 DIST qrna-2.0.3c.tar.bz2 6423705 BLAKE2B 42bb2f03bac4034da9bcdedcd7c09ce7d1892ceb14d5682745d77c7575a84ae1a6a598406895be2a844ceaffee045ec6357ad08cc0d67a1312458d11b6540fda SHA512 98710bcf8993e2c09ec1eb33632a18ac993ab817dc95a865200b0868f79b95ff61f5f7d3f0c1c33de6d26f674025ea11a8c7d8175b96071e4594daa252fa52b5 EBUILD qrna-2.0.3c-r3.ebuild 950 BLAKE2B adf9ed2e0efbdc1324e7ab68366f4bea99a1e27192d6d7eebff579a74c647af45b2150649347c581547bf78e266ebcde909ced51eeca63ade688007f51c065c6 SHA512 a59e67d3e608b1b441fd4f8a80bcdeb89431372406d149bb0df84a375a376e4b5b7d4bc74771b0e48daebdf412b63b04e3e83bcc32a583f1436fb30a6f320baf -MISC metadata.xml 261 BLAKE2B 3768c926bca545090342a947ba83e706a8954c51b99a5e7b3476ba5198cd326fe1c3b8efb51dfd6be1800682556b8ceea065e388981463ab32f3d687951872f3 SHA512 537da0d3aa2741ebe4442d5dd9b53409decfc9d12ca8e5af8e737c4deb2910c884207e2d441025d19469816100889f04c11038bdffd6a1a15c6217495445090a +MISC metadata.xml 262 BLAKE2B adaacf2ac22ce09f8b1b68f538773c1e2101156181ff302eca2ce1280ee5d45db4eb302a8eee1bbead5e55942443dd16ef924cfbfdc95a1658dc6a9f460468a2 SHA512 ac924b6b530d96645f173d40f7a2bf0e3abbf49048ebf7fadcea3dd553cd25504f0e68a103395de1fb59a2e5e11497dcead601be01cc6f0295ccbc4155f67e3f diff --git a/sci-biology/qrna/metadata.xml b/sci-biology/qrna/metadata.xml index 8417d1580d40..bdabd1d83788 100644 --- a/sci-biology/qrna/metadata.xml +++ b/sci-biology/qrna/metadata.xml @@ -1,5 +1,5 @@ <?xml version="1.0" encoding="UTF-8"?> -<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<!DOCTYPE pkgmetadata SYSTEM "https://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <maintainer type="project"> <email>sci-biology@gentoo.org</email> diff --git a/sci-biology/raxml/Manifest b/sci-biology/raxml/Manifest index 3b965935e19e..820b570e7e04 100644 --- a/sci-biology/raxml/Manifest +++ b/sci-biology/raxml/Manifest @@ -1,4 +1,4 @@ AUX raxml-7.2.6-makefile.patch 786 BLAKE2B d6fc28b20fc3b00b33cefd93fa90f0db255eec642a3fd760baa5489ab90dbb31d9896fe7a595e9f2e4e47b53ab24e1ef2a80486dbe77062f835fce17687a50ae SHA512 955c1403dbae7d5308f10808c3689d04cd4bc6166647fd5d7c6a5eafca45b42f409a22642a57dc19a8f3ce4e00e2e554988ed5a02954ee85ab805759e60beeea DIST RAxML-7.2.6.tar.bz2 202803 BLAKE2B 579676ff9fad1563eabb9507015acff010977a89ae087df9b828b80bc9352ed44c98faeaf4c8d884ffa14176bfa28772dc9872ad8b5d401aff8b834c728e5f65 SHA512 b0027a7e583e6471a774d9e784a0be1ff63b3824a8cfbebca68bf9e414adab297206ea2d43c9b97456e6acc0a6a15f55ca33983381dd6150f9e7ea71ddecdcd3 EBUILD raxml-7.2.6.ebuild 902 BLAKE2B 23d2b1a93bf50587d5bcacbaf261ad98eecd4e6d6d86bce62bad4459286bdb678c60ad5699cd22c5d6e03df4fb49ccd95c40bbb30f6ec7990e8f81518709aa66 SHA512 5583a0fcb21f80f1cc1d7fe282f56235b6b0add1699330652f8c6c669cbbb1975eb8e088f566252b897a94e5bb80f2738de538d570951bd7508b5a607324c34f -MISC metadata.xml 267 BLAKE2B 7cf386952842945148119de3263231db4d1046d5f54811f7e303ed8ec4d27cbc1960b99c92daf6f32e5b981c2fb9f50ec666be6193865d6e18541b7427a152a9 SHA512 91ab266d9ab24401bc0fec759c5b6cfcf44a3c5669fc31c7301d79770839bb5dfa0e155d949392ef06176b4a0b2c32b91b1b54b0027f972db61f0a5e54644403 +MISC metadata.xml 268 BLAKE2B a4d67334cdad8626d60e46b677ee1c83f569e5e20b3739a7664bb33be1829f8478af35e135bf734a6ff151b8543ea6c4ecafbf822cee8189f7e7096bd9698711 SHA512 59d3d8213b1a219396b74b6f4188c01e1cb4eb1c63e6792ce1e7fdb8000d1a4625919337ff77288ca7f7e07d9753f481d2381a06f554012633cd678194c980de diff --git a/sci-biology/raxml/metadata.xml b/sci-biology/raxml/metadata.xml index 959160fe46b1..ccdff086e20b 100644 --- a/sci-biology/raxml/metadata.xml +++ b/sci-biology/raxml/metadata.xml @@ -1,5 +1,5 @@ <?xml version="1.0" encoding="UTF-8"?> -<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<!DOCTYPE pkgmetadata SYSTEM "https://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <maintainer type="project"> <email>sci-biology@gentoo.org</email> diff --git a/sci-biology/rebase/Manifest b/sci-biology/rebase/Manifest index b89581fb86f7..04e08f78ab4e 100644 --- a/sci-biology/rebase/Manifest +++ b/sci-biology/rebase/Manifest @@ -1,3 +1,3 @@ DIST rebase-1901.tar.xz 182532548 BLAKE2B 5ac8d26ab057bcd21dc9c57abeb226ac70cfabb156b48a51f820789626257be55bb21c9eb2099e6e55b1cfe3691480df0ec9b3f4b18b50ba2712b986c6d057b4 SHA512 1e3553e59c3520190754cb40bb0900e466d9ffd206e6460d3262a7d7d2af8aab0e28f3e60187665362824fa3730211c0e2119016ce5fed49095f9de46c7f25d4 EBUILD rebase-1901.ebuild 1088 BLAKE2B 9364896661246fc5d46a524874f95e395d3648239e89d2de265356e4b949ecd275c4d3e808e7bd60af27aa95257c1a92deac21eb1258e87bb318ba25896c1ada SHA512 d0e971497259f6989f4bd73ee9a5719276e200372d943dbc6c9f9eec4de7e8d71ffa413b19b162c7b028332a82b516e572515bc9e9e0e638a39933b6fdd0a831 -MISC metadata.xml 907 BLAKE2B 87023eda8004c64dbd6ec605dcc7cff07f247f5cbf140ee65932c1e80ace99be4f43f2e529b9569a0220e2e60e03e88ef323af1c0dbbbdbee5da0eb0e46ba5f2 SHA512 dfbf6a8c60f75b92b056f6dc5b74adfc588ab0b1edb48ba15a6516254a58b736f101036d8061ed2abd69ca202356f6653bdd578f1a94ae54e5f6df6cc2e5155f +MISC metadata.xml 908 BLAKE2B c5b8a6f961e426788c9a6b84d01c468fa7613b52da52bf4ba4d057f0c1966ac1092acd219160e96bc2778673ebe82398471044a34e775ded0a5d72221adf363b SHA512 0c9bc87df88e5485350071b4b219dbf90958de0394444fda093fdef18ede4378c0463b6e81bd48c5c162ae0c581d186c693d3474f895a4e4de59d36c3f5a0588 diff --git a/sci-biology/rebase/metadata.xml b/sci-biology/rebase/metadata.xml index dbd090188c93..e4403acacd03 100644 --- a/sci-biology/rebase/metadata.xml +++ b/sci-biology/rebase/metadata.xml @@ -1,5 +1,5 @@ <?xml version="1.0" encoding="UTF-8"?> -<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<!DOCTYPE pkgmetadata SYSTEM "https://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <maintainer type="project"> <email>sci-biology@gentoo.org</email> diff --git a/sci-biology/recon/Manifest b/sci-biology/recon/Manifest index e6f77fad918f..2f04c00a5925 100644 --- a/sci-biology/recon/Manifest +++ b/sci-biology/recon/Manifest @@ -2,4 +2,4 @@ AUX recon-1.08-buffer-overflow.patch 290 BLAKE2B 3fb3bf31f7975d9c0610e53d56b6e23 AUX recon-1.08-perl-shebangs.patch 420 BLAKE2B 7ff36e0d6fcd96d7345167880e82ab325f4ab09bdfc37bac2f8949158abf48eba9e8fb64976322d3a3056d50e5c3900bf885049662db1375cd3c2cb9e6b10f47 SHA512 b681a0f911268ab39bc64cc35f4647a71696f3cbc4610f6fb7c061ca70406934ca2f85525578c28530431725ae9399c327a7551eb19dd46552ce5e65b2399a88 DIST RECON-1.08.tar.gz 108477 BLAKE2B 155a740056e876f5aa2279ca0572fe151a52a2db5ac43af9b902ea4c099727f3274dd58abec59b74c13605ccd37ad9b3cd80379f79cb976c4bb677f661fd6273 SHA512 68672312f31751fa93250bbe337ae57f11dc4b1994c7dd5249dca916012c2df83a03c925cb631709e081c72055ef5bffd0846bc252d8c3c6247ae5ef61b160c9 EBUILD recon-1.08.ebuild 964 BLAKE2B 19ef960784329b03bdcb1d2eb46223b40bfb6dc8e617b06ae526b0690ae6d6ea444e9db1d6c466c1a3f62db0e773de349d4c338a0c9e9182d2803342b35fc6a9 SHA512 39805629341d019e769ff796f9ef12aedaadcc431904a6bd0b6e48b145a3631a1f7ebbccdff6fc23cdaf75e55ee909ea5fc7969b35082fcec0b963e48baf3215 -MISC metadata.xml 267 BLAKE2B 7cf386952842945148119de3263231db4d1046d5f54811f7e303ed8ec4d27cbc1960b99c92daf6f32e5b981c2fb9f50ec666be6193865d6e18541b7427a152a9 SHA512 91ab266d9ab24401bc0fec759c5b6cfcf44a3c5669fc31c7301d79770839bb5dfa0e155d949392ef06176b4a0b2c32b91b1b54b0027f972db61f0a5e54644403 +MISC metadata.xml 268 BLAKE2B a4d67334cdad8626d60e46b677ee1c83f569e5e20b3739a7664bb33be1829f8478af35e135bf734a6ff151b8543ea6c4ecafbf822cee8189f7e7096bd9698711 SHA512 59d3d8213b1a219396b74b6f4188c01e1cb4eb1c63e6792ce1e7fdb8000d1a4625919337ff77288ca7f7e07d9753f481d2381a06f554012633cd678194c980de diff --git a/sci-biology/recon/metadata.xml b/sci-biology/recon/metadata.xml index 959160fe46b1..ccdff086e20b 100644 --- a/sci-biology/recon/metadata.xml +++ b/sci-biology/recon/metadata.xml @@ -1,5 +1,5 @@ <?xml version="1.0" encoding="UTF-8"?> -<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<!DOCTYPE pkgmetadata SYSTEM "https://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <maintainer type="project"> <email>sci-biology@gentoo.org</email> diff --git a/sci-biology/repeatmasker-libraries/Manifest b/sci-biology/repeatmasker-libraries/Manifest index 682ae744e75b..dcc95a8bcc86 100644 --- a/sci-biology/repeatmasker-libraries/Manifest +++ b/sci-biology/repeatmasker-libraries/Manifest @@ -1,3 +1,3 @@ DIST repeatmaskerlibraries-20120418.tar.gz 28059668 BLAKE2B 0683305f0d3045ff1bcb9f1c952d3c12e92a3003f79ba18a16334805049a64e0b307fac2cf7fad236c9b0cab80e3317ebb1d93bf6487bafd9d45de2455565879 SHA512 254d47faeee72ee62e6854ebc389578691d66e99d9d5e2a0c2462bf752ac5b4d2171c9e6b45d4f87f548a96b62753bb9c37c2d2c00e06544e91dd09fe2bbfe32 EBUILD repeatmasker-libraries-20120418.ebuild 741 BLAKE2B 5226277bfa19b7642ab426572f799318e54e823728297371b580038b60c3d9c6226156e889e8562c546fd06e1fb443811354062344d78a80addf84a7ff322dba SHA512 e72c9eb08d6cbf11199e3aaeb9b847afcc764857f9624a2c8d5e228160a5a058bf6d0e1521ddfb82c43104084a397f10a5164009598a25f06ae54d121908e7a2 -MISC metadata.xml 267 BLAKE2B 7cf386952842945148119de3263231db4d1046d5f54811f7e303ed8ec4d27cbc1960b99c92daf6f32e5b981c2fb9f50ec666be6193865d6e18541b7427a152a9 SHA512 91ab266d9ab24401bc0fec759c5b6cfcf44a3c5669fc31c7301d79770839bb5dfa0e155d949392ef06176b4a0b2c32b91b1b54b0027f972db61f0a5e54644403 +MISC metadata.xml 268 BLAKE2B a4d67334cdad8626d60e46b677ee1c83f569e5e20b3739a7664bb33be1829f8478af35e135bf734a6ff151b8543ea6c4ecafbf822cee8189f7e7096bd9698711 SHA512 59d3d8213b1a219396b74b6f4188c01e1cb4eb1c63e6792ce1e7fdb8000d1a4625919337ff77288ca7f7e07d9753f481d2381a06f554012633cd678194c980de diff --git a/sci-biology/repeatmasker-libraries/metadata.xml b/sci-biology/repeatmasker-libraries/metadata.xml index 959160fe46b1..ccdff086e20b 100644 --- a/sci-biology/repeatmasker-libraries/metadata.xml +++ b/sci-biology/repeatmasker-libraries/metadata.xml @@ -1,5 +1,5 @@ <?xml version="1.0" encoding="UTF-8"?> -<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<!DOCTYPE pkgmetadata SYSTEM "https://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <maintainer type="project"> <email>sci-biology@gentoo.org</email> diff --git a/sci-biology/repeatmasker/Manifest b/sci-biology/repeatmasker/Manifest index 9bcd96590519..d43f4216b5ad 100644 --- a/sci-biology/repeatmasker/Manifest +++ b/sci-biology/repeatmasker/Manifest @@ -1,3 +1,3 @@ DIST RepeatMasker-open-4-0-1.tar.gz 84077910 BLAKE2B 45598d46ef1c0e1233ed5ce10c2d29e4b2ef1a6843846970df2d0f997a22657eeed7dd7c851418d6f751468b22327b47f3b72105fdcfa56bbebe97395946ab37 SHA512 6b710a02b2964bca6acb25cc918bd56f7caba7b80b3b683972f0584180bf0fd3704f657d7ee341187a4ac86d9883e62eb4f09da237fa8ef1b481137d1a89963e EBUILD repeatmasker-4.0.1.ebuild 1501 BLAKE2B c8a6bef25b5e9cfbf4be2d5336b7b9960872c16368c470dd720be2a76529e894077ee2875999cfbce66b954f3ec059de0a9e98e605e3c4b17338f520a43580f2 SHA512 a90a31bd066e05384f6583a04f2e8bb4624f84e2125b25eebc3b253ceca1e9bf1090e11ddbdda824f1e9a939b4fbe8f900335e14c6604d1f947ab6083191df5d -MISC metadata.xml 267 BLAKE2B 7cf386952842945148119de3263231db4d1046d5f54811f7e303ed8ec4d27cbc1960b99c92daf6f32e5b981c2fb9f50ec666be6193865d6e18541b7427a152a9 SHA512 91ab266d9ab24401bc0fec759c5b6cfcf44a3c5669fc31c7301d79770839bb5dfa0e155d949392ef06176b4a0b2c32b91b1b54b0027f972db61f0a5e54644403 +MISC metadata.xml 268 BLAKE2B a4d67334cdad8626d60e46b677ee1c83f569e5e20b3739a7664bb33be1829f8478af35e135bf734a6ff151b8543ea6c4ecafbf822cee8189f7e7096bd9698711 SHA512 59d3d8213b1a219396b74b6f4188c01e1cb4eb1c63e6792ce1e7fdb8000d1a4625919337ff77288ca7f7e07d9753f481d2381a06f554012633cd678194c980de diff --git a/sci-biology/repeatmasker/metadata.xml b/sci-biology/repeatmasker/metadata.xml index 959160fe46b1..ccdff086e20b 100644 --- a/sci-biology/repeatmasker/metadata.xml +++ b/sci-biology/repeatmasker/metadata.xml @@ -1,5 +1,5 @@ <?xml version="1.0" encoding="UTF-8"?> -<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<!DOCTYPE pkgmetadata SYSTEM "https://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <maintainer type="project"> <email>sci-biology@gentoo.org</email> diff --git a/sci-biology/rmblast/Manifest b/sci-biology/rmblast/Manifest index aeebda0dc150..1b59326510d7 100644 --- a/sci-biology/rmblast/Manifest +++ b/sci-biology/rmblast/Manifest @@ -1,4 +1,4 @@ DIST rmblast-1.2-gcc47.patch.bz2 7803 BLAKE2B cd3bb1aa2b6eb9e188f28589d42ce91f027866d91013f2a6123ee61e7ce28f980b858e775bc15313cf1573f0bc827f9e663d46c1bd0d2fe218745cfbbc3781a1 SHA512 4cd72dd5c777ad866b9cf674384872de5424404b524ac536e58ab412b98b6601aa5f609d05ea2329b77f16e7aca215bbc6eb3531652e5fe81e48cf997b56d13b DIST rmblast-1.2-ncbi-blast-2.2.23+-src.tar.gz 10744076 BLAKE2B 6539ec8fcd345bcc1c3ecede6acec233cdc343c3df18748e195dc525f4a65fefeee8398471a26dc671bfed8612e010c26b7a8a66a3c7198f142c2e068ff72751 SHA512 e7c2ebd114aee045ea3f3f462cf2658440e13a2d1eb777648386e1c5eeda9f8083af383c019f9b5802d935d6eb2367eef20822afc45233ddb44a426b4dd7ddb6 EBUILD rmblast-1.2-r1.ebuild 1191 BLAKE2B b096fcac217355ebecf8a33b1f145ae6482663e7437b78d1024858959d1653e2424f250d69fb238118751cb4133016fb17cc584f10a299bb6bcbae2a08806d53 SHA512 b2b4cd8e6eed2df9ff4a39783006515e57614dca8a14e38ae4335badb3af81056d4dad7aa377f78aafc659a06eb6cd8f184b60c4581771e2f6c077d3d635304a -MISC metadata.xml 267 BLAKE2B 7cf386952842945148119de3263231db4d1046d5f54811f7e303ed8ec4d27cbc1960b99c92daf6f32e5b981c2fb9f50ec666be6193865d6e18541b7427a152a9 SHA512 91ab266d9ab24401bc0fec759c5b6cfcf44a3c5669fc31c7301d79770839bb5dfa0e155d949392ef06176b4a0b2c32b91b1b54b0027f972db61f0a5e54644403 +MISC metadata.xml 268 BLAKE2B a4d67334cdad8626d60e46b677ee1c83f569e5e20b3739a7664bb33be1829f8478af35e135bf734a6ff151b8543ea6c4ecafbf822cee8189f7e7096bd9698711 SHA512 59d3d8213b1a219396b74b6f4188c01e1cb4eb1c63e6792ce1e7fdb8000d1a4625919337ff77288ca7f7e07d9753f481d2381a06f554012633cd678194c980de diff --git a/sci-biology/rmblast/metadata.xml b/sci-biology/rmblast/metadata.xml index 959160fe46b1..ccdff086e20b 100644 --- a/sci-biology/rmblast/metadata.xml +++ b/sci-biology/rmblast/metadata.xml @@ -1,5 +1,5 @@ <?xml version="1.0" encoding="UTF-8"?> -<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<!DOCTYPE pkgmetadata SYSTEM "https://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <maintainer type="project"> <email>sci-biology@gentoo.org</email> diff --git a/sci-biology/rnaview/Manifest b/sci-biology/rnaview/Manifest index b5ceaff20777..20f865ebf762 100644 --- a/sci-biology/rnaview/Manifest +++ b/sci-biology/rnaview/Manifest @@ -2,4 +2,4 @@ AUX rnaview-20040713-implicit.patch 347 BLAKE2B fc12a2d06bfdb88889e3b2af1b207b1e AUX rnaview-20040713-makefile.patch 2131 BLAKE2B 502f4eaf2f0f4a82b6a85ad17804d2f2a675e3d28873cb13873aa9cb450e29c51f44685e9c20dda0525a7ea2aab4005f0e5dfce919c03c47ea3489fb981a88ac SHA512 9cde6186c0865405546bbee68ec64bd11cdfe91747b90739b237368b2724763ac4dd9206defec7f00a918449fc2a8451c3a5e447cfddfb7ca5c5fed00bb29de6 DIST rnaview-20040713.tar.bz2 433916 BLAKE2B e6f52fbb90a11290728c0a67b8ccde42c1c20967c8b9810c0c1103a300d1cf1a4ee1c9e501c203ae3f3dfda29fb5851603f095931c3efedd86143793115e633b SHA512 c63bb728bad0f358ab36f4ca18f4f9ef046811f21d3b8f3c6fdd3e6e6fcb367a9a52710476c5daea001f8f3262f72b64f0c0546f0c1423f463f2e0d288809e8e EBUILD rnaview-20040713-r4.ebuild 657 BLAKE2B d840990168b0e5583ca730daadbbf3ad77b9e3fba023388c508edd65f48d883c7c904840f75f070f9b004b7e08e80f4a17a7c02b261c8cc1febf43bca399b10c SHA512 20ed56130c1a2cdd18cfc0717cdaca75030bdc2315343b390d0f01aa7ee9fc760734c9ec692bbe13c0930007dd47bfefea13b0d0c205bf1ee6850221e8df96c8 -MISC metadata.xml 666 BLAKE2B f12db8362c75b6d88c844fa15f7617656ffd3d1ae3020b84eb04b17062efd1a664befb9e664cdb49c6c07f01a678a72c000c8e0077fc964939d467f7e0838aed SHA512 70614f391a69e8f2b21d1b3a277d7693436fb8d2089e390b61a1d71ecacdadf2818f7d255a083dcb4c585df90817c5e9d129e38f365635197d74e81e84c33786 +MISC metadata.xml 667 BLAKE2B f88e229df64f58024cfd40ef2a6f8acb976f7ff1335080d1de1934a984c709cdf8e32a1831a8c62b1729e83f6a95f97abefc2d2fdcf870e66d704accb9d4cedc SHA512 9984f82b1ee7322822a022724c7c9d8920915fc2d70440a89aa611910b92ac74d1c8a22cf31a9b67d7d51c708319b17bd7e060bc22ea603958223d45ed186a3c diff --git a/sci-biology/rnaview/metadata.xml b/sci-biology/rnaview/metadata.xml index cfffc1223753..396eccdc212f 100644 --- a/sci-biology/rnaview/metadata.xml +++ b/sci-biology/rnaview/metadata.xml @@ -1,5 +1,5 @@ <?xml version="1.0" encoding="UTF-8"?> -<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<!DOCTYPE pkgmetadata SYSTEM "https://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <maintainer type="project"> <email>sci-biology@gentoo.org</email> diff --git a/sci-biology/samtools/Manifest b/sci-biology/samtools/Manifest index 66f09ef40483..81ff987d83da 100644 --- a/sci-biology/samtools/Manifest +++ b/sci-biology/samtools/Manifest @@ -3,4 +3,4 @@ DIST samtools-0.1.20.tar.gz 566387 BLAKE2B a62d74c408877754af50f5e5fea0e2289ec1e DIST samtools-1.10.tar.bz2 4721173 BLAKE2B 103c71ec5740eac151a4fc40d67286ee00123c7befd5f654cf5c89812bda44f82b38ab662a4a3216ac84434cabab49500b903612137f97f89a7ea38063e8fc08 SHA512 828ec2638592b440e06b81eafc57634416ab54dac6caaecb06f22a90e9bf99da1fd8bb54509cb98591899c4e097ac9038ee5d57ea7bfe1a18967cde4018d840a EBUILD samtools-0.1.20-r4.ebuild 2049 BLAKE2B d377712eaca931258b37645e6a6b3cc379fdb550ef83a0c272a3eb564d7753185fea53416973e4fdf2c25b79475a81ae72b646ce22c570c934e4eabce8a9ded6 SHA512 c0d387f715ebf1f746ea4e4a7eab85a86ef0bff646c9a69639b17ef02e93c39982941d7eb811a6d67b0e635c9c4e05924d2b89a6809c3bd0592db91894dab4aa EBUILD samtools-1.10-r1.ebuild 993 BLAKE2B 69080337f15d653be56680f3183c2eab3c1813805e3ffc3be1d6dc0e04264a063ae758b694ccb1ff097e952cad736a387de02905ca4f7d4af779233d9e1fced2 SHA512 15dab01b933e56fc83b71f68b2c52c69b115df19f72599e4b4d9d959f9035a468e3ad825cb2e12a80ba558b953879d1b6f8e9dc50922d099c375312dd7580040 -MISC metadata.xml 408 BLAKE2B fcff66a327d0396cd0a1b0cb5c00aeb1bc728759d6d39933651f63e22d966af9c33d14f149d2ee008ca48266da1f24ff5919942d143d066898dc635673153df9 SHA512 71a9d6a299db7717ccd851a4519354c1fd7a373dd79af6fa216ebc9b6b0ccbbccc4394ca00c3f842afee492702f079268c5c83815eaaafa446bf0f37750c62ff +MISC metadata.xml 409 BLAKE2B c94eab9ebda4844beb471694106e353ccbbaca53e69de680301c6cfab3f3b6224ec94fcd631c9de2811d309463e5ee6decf2e443bfc68921f3362c6a312cd3af SHA512 fb2d3686e1ee70e4e80266a26603b3e52b680b1537a4569493a3a0511b93e2acdb2be3136df7ae54905a9f86fb7e53fa054607262751ebd8f54903f1905dad24 diff --git a/sci-biology/samtools/metadata.xml b/sci-biology/samtools/metadata.xml index 6f516e1d05ac..ddf4bb2590f4 100644 --- a/sci-biology/samtools/metadata.xml +++ b/sci-biology/samtools/metadata.xml @@ -1,5 +1,5 @@ <?xml version="1.0" encoding="UTF-8"?> -<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<!DOCTYPE pkgmetadata SYSTEM "https://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <maintainer type="project"> <email>sci-biology@gentoo.org</email> diff --git a/sci-biology/seaview/Manifest b/sci-biology/seaview/Manifest index dd7a8e73e258..bef0a16e2247 100644 --- a/sci-biology/seaview/Manifest +++ b/sci-biology/seaview/Manifest @@ -2,4 +2,4 @@ AUX seaview-4.6-Wreserved-user-defined-literal.patch 3271 BLAKE2B 695411acffed44 AUX seaview-4.6-fno-common.patch 3171 BLAKE2B a3dfdb8d90279cdc16489d5e304eb81d3893f63d55ec5363d86fce5d90aa87c003fb2f41dafb09f46002aa1b45871161ff5b0de6e22bd24d77c98727880818d5 SHA512 89b1d46956232b6c7a3979c804339e2bc4e9f99224c7c06091a2526c92ddd55415762a39d183e0249ae7251afada28bfb6f863bd91167ea647d76d4c548c1f6a DIST seaview_4.6.tar.gz 424258 BLAKE2B e958ff4b1f6bb283a2122d65917a352914f33e5c9593c34c449800fbcac74b0dd4fa98bb1f47c45e11f24e07dfebb3ced54fbd8440b2bcd2b1df32dc398d5892 SHA512 e005d9dcc9e03c5636404e94f0059f7d4a9289fe77ecdab765e3ca2b59d826b8711a344f3824d079383a7ede0fe17b3b06694dfb7b709bb6a0a1e38cef6ee1d6 EBUILD seaview-4.6-r1.ebuild 2106 BLAKE2B 6a7d4e6295285cd072db997acc3f9467fb46a813a8da640372ec55228792d85f43fce137b2c5f90d60c6e77918280192967001ad7ac6a2a80a69c390cf6ed218 SHA512 76b24794f87383ec39638569e7c61c5f500ea84a89cabb04d1bbcf101bffecc97e99729a4e29f3d4252a980c8a40889d1e4161ebea272a09946a78ecd4b75f4c -MISC metadata.xml 621 BLAKE2B 9c56cc2099ed696942e2958926ee8c9f24be26fd273e74a7f789d368c3a222f084363ec3a4eada5e1197c4a81f533074f4b05c43d1e9c951e66261d55bc4d9e8 SHA512 7c49694ef56359e58b76b0dd7715d28615a541655c6ccaa2d7d64041c7340082bd5026fa2baa5a15e51e3aa27309d5a72ab836a5ee554366eb324406a50a09c4 +MISC metadata.xml 622 BLAKE2B 3b86dd7c735c8040c3fe5b0dfc24450efcda632d2e7b785094ff7da08b7dacad6cecbc698def1db693507b2f2d7503199f5e453d5221d6211ca4e5b5e674cfcf SHA512 efb6a829a8c287dd058d132ad5db56d41d1c555c5610e66ee907edbd34ed28f6e6168def8d746b3ab0a14ec4a713b1b11018ffe948a6a83895d48462bf0d06e6 diff --git a/sci-biology/seaview/metadata.xml b/sci-biology/seaview/metadata.xml index 14e26ee93445..a01c6174c4ce 100644 --- a/sci-biology/seaview/metadata.xml +++ b/sci-biology/seaview/metadata.xml @@ -1,5 +1,5 @@ <?xml version="1.0" encoding="UTF-8"?> -<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<!DOCTYPE pkgmetadata SYSTEM "https://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <maintainer type="project"> <email>sci-biology@gentoo.org</email> diff --git a/sci-biology/seqan/Manifest b/sci-biology/seqan/Manifest index 8d7f1285b2e6..5264bf200470 100644 --- a/sci-biology/seqan/Manifest +++ b/sci-biology/seqan/Manifest @@ -3,4 +3,4 @@ AUX seqan-2.4.0-fix-pthread.patch 541 BLAKE2B 16d42c72d6ea0654ba6727ce1007b89d3f AUX seqan-2.4.0-installpaths.patch 1661 BLAKE2B 6548f5b7cd0e26d187ff61a8e8e3db008700b5131a57228f0cd567642fae12778ff2a77960fa318f6244a80f94e771ebeb218fee8eaf6ec1a4c827e972d1ac90 SHA512 9b2100cd2a4069fd9022723ca6972251d2307f4886b3dcdf68816e78d38359d8767e20e19b4170213abb905bc3b570ed257e025e063a475ff3406d8f1e8d3313 DIST seqan-v2.4.0.tar.gz 109626901 BLAKE2B a10b5ee9a95667f560a8c2aec3808131f5f838f3c07d56584f4b29e9622912bf3d00b958b02db7c9d62dd52d9d08a171abcccef7f50cddf0407538168cf2c592 SHA512 f92cfc97304581920850c5d49fe4336f7c3855e99c3bcb035b6172fa7307e08e6f06fb06d1cd8f5b447c3220fc7f669684fbfe25641b43e9f6953999cf9ddd4b EBUILD seqan-2.4.0-r1.ebuild 1592 BLAKE2B 98ca9dce72bca2d2069eb94a9f998c5f7d25d303c053930264a51231dc3972243ef7433d9a750f9b0d4b26950a7adc7ccf7f863a8a87f3393821f72f285591bd SHA512 e63405b1c8ab04bf2e635601b27effa62b116e4d5c14f4244f2a5cbd1047e22c2b4c8793602535225ad426ccf8f69b0f68967d47db81b65ae3c0abeee6b5d057 -MISC metadata.xml 372 BLAKE2B d620401f1aab9be80ddb6dc7abe737fd3e6322c560136e2c3b33d9246beca2986b4d91225b506e8c3035550994c3f714a11c0d8b17efd30c29278002d4eb7a12 SHA512 ae6c49e7e45c0ce4dd4fe27d21c5376c6fb8d7bfd2f98b7775f4689811680fa92c0b71ac0db70f6969660c4aee344f710ef752a467d6d46dd83aa47386d2ec17 +MISC metadata.xml 373 BLAKE2B 1fd7eb9978c4b1e8fee1edb30bef8e18de04fdbc6677f8442e0cb706512b7a49c0681737ade6b9c96f67e234907890694bafe8edfb6c35ef25cd570920ea07f7 SHA512 b273e12542b160e215945d85504a3e9ba9973b68e6870f9d27104024fb09b8e293d8f6f71f8a005ad35690a530cec608e5e01a5158b747e1003ce9c87add8486 diff --git a/sci-biology/seqan/metadata.xml b/sci-biology/seqan/metadata.xml index 077f6458a927..7b3d5730b341 100644 --- a/sci-biology/seqan/metadata.xml +++ b/sci-biology/seqan/metadata.xml @@ -1,5 +1,5 @@ <?xml version="1.0" encoding="UTF-8"?> -<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<!DOCTYPE pkgmetadata SYSTEM "https://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <maintainer type="project"> <email>sci-biology@gentoo.org</email> diff --git a/sci-biology/sibsim4/Manifest b/sci-biology/sibsim4/Manifest index 805e39d3ab00..b005a854599c 100644 --- a/sci-biology/sibsim4/Manifest +++ b/sci-biology/sibsim4/Manifest @@ -1,4 +1,4 @@ AUX sibsim4-0.20-makefile.patch 603 BLAKE2B 1d5bf536aec1c8d6716a2feeefc19d9397c8a8446899d40bdc58abe577ed5b4e7234b21bd428a831fcccd9ed0cdf6da70e9fda0db3070e3d51506b91b4324d01 SHA512 d434cf369ec418e29df7d34b139acf06182d84d1e83a7aaafe2d5df2ee49884ff86ad7fd5b6697108e7d1dea865652c8755459ff4ec0ae6395b1ec8c46126e55 DIST SIBsim4-0.20.tar.gz 32118 BLAKE2B 79b1f080d547732ee6a5996885c26f422f8a1590fa37d525f35cfa3dee353fd36ce9aa4677fe7e570f43e8283c26541c8c9e76ca03788a66d1c356adb3d649d5 SHA512 3802520095e83d3c691804b661696095a4198c4b2a16385c55ccdc8e4e836f82cc9c2251a5d37cb5918c2ee80aeb81737d751e6b065fbfe9c64f1aee3e0ea0c8 EBUILD sibsim4-0.20.ebuild 518 BLAKE2B 0999e252ed6713e462f04dfa6d1ee0c48982ff614b54aa4126fae1ab4bcb615153abcef38806a193e32bce14daf9d7b22ff71a86d005b7c222b497dd7aff23be SHA512 903d8d9a98e31197a9018cb13d255a7ce7ca2cfc94d40f4fe8ee793ef2f8e7736907a6f37633b900b02430a842fae11e55ad1880e551807dc40e8069c2aff59f -MISC metadata.xml 348 BLAKE2B 4765b3098d0a6ac9ac1f5677bc13ab1e767d4beb7d9fd02adedab808382a80ab9ad0acf994783bfbfd66fbb5c580459f569215426d713b8c385054586387012b SHA512 9628452f960b9837192126173a46e916bfa1f16421a470166ce3812d7e8d455a2f8eb5ba78ccb6f52e5d0acbbc009f31f0eabd5619bc864790c258220333aba0 +MISC metadata.xml 349 BLAKE2B 67cc5ec26168241638acef4254a0b8682d9df46e574871b9aaa114a5ba8ecf3bf2e3a6bf5523c145df33415e1900faa95e8d65344b861c18e6e9ee800b2fca5f SHA512 ceea81611ac099beabf355230b2df7e61e96fdb8823e992bc283094f182ca8b2486f50d016242f1dd21c1b4148b832f73de4af9cba57a108122d714313a8b5f6 diff --git a/sci-biology/sibsim4/metadata.xml b/sci-biology/sibsim4/metadata.xml index 9445a4950bc0..149d1330aaf9 100644 --- a/sci-biology/sibsim4/metadata.xml +++ b/sci-biology/sibsim4/metadata.xml @@ -1,5 +1,5 @@ <?xml version="1.0" encoding="UTF-8"?> -<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<!DOCTYPE pkgmetadata SYSTEM "https://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <maintainer type="project"> <email>sci-biology@gentoo.org</email> diff --git a/sci-biology/sim4/Manifest b/sci-biology/sim4/Manifest index 2bf438e5ce67..530496d9579e 100644 --- a/sci-biology/sim4/Manifest +++ b/sci-biology/sim4/Manifest @@ -1,4 +1,4 @@ AUX sim4-20030921-fix-build-system.patch 491 BLAKE2B 87842374146fa44c2788ce7444480cb7be244d04f0e2f2d22bdc5cca766b4bd610b94a5d6088c58ce2005b8e7664fab6ec4b0ea598e833a34fa1edff29e413da SHA512 fdc737ccacd7cb4f7c5534af49587d7958f62dbe66a5197c38bda89af3cdd572231c10af75e8bb59120fa116f856f1ca5ba95279f9a2fe07228543588552f915 DIST sim4-20030921.tar.gz 60814 BLAKE2B 2a6aeaf56cbec7b3d5e8cb0c0405afd3b1325977d1b68ba319347dbc38461bde9bdb028e92d8b463a593a2fdc8d72d65db27c8e30462901ce8921632201ad038 SHA512 de7ee4094830262cb7ea8ed2f4573beed96df4b12f2915f669c52fd3fa40f5a4894cd94224e575bfb2588f9a6f19c0b73a38d6209d92a1dc644639a4927aa6b5 EBUILD sim4-20030921-r2.ebuild 526 BLAKE2B 5ce172642026a68778c15228a9ed778948805e4e7d424f0c0035d1c7a4480e45d4c0a93c308a0e5f203dcf79d102dd1b65b2d69d3122d9abf3bcf6be4ad629e6 SHA512 d6d3cc0e35c09424182357554b94d0cd2327ffeb13c78b989ad7aea503a3e2161ec1355c08d6190b934e5c731cf214f9d13cadeb127a8305a8897bd55a649de6 -MISC metadata.xml 1228 BLAKE2B e3e87915a4b710b37be351835010d57cea2b044160a7e0a5651366c07127509e6bf422f4b20b314a0810a86eae33d44612a758e1081f7dcd194476c30a784c1f SHA512 417eff4c0d22bb4bef9bd027c79171375f9638e7efd452444d2c2a40b79a02c24f69b6158448420970a86e87358ed6bd397307b227cbe1b3bbf6813b6433d565 +MISC metadata.xml 1229 BLAKE2B 19108d167b885de760799921cae4723e42b5a1ed83b290a46e15e3ff79bf84feeed1f5f60e3334acd1036f9f45d1b9e01a8dfda9dc9c22a7cc5c9e8abb52ec70 SHA512 482ab89bc2a9226ab858417a7ec52eef4e36c21e8c0399174ad811f37ba8409fad1990187abb9161b54166f7691a06729835d77d51fdb0b85044b89c8e2402de diff --git a/sci-biology/sim4/metadata.xml b/sci-biology/sim4/metadata.xml index 6366d6fb797e..1e40799f38d9 100644 --- a/sci-biology/sim4/metadata.xml +++ b/sci-biology/sim4/metadata.xml @@ -1,5 +1,5 @@ <?xml version="1.0" encoding="UTF-8"?> -<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<!DOCTYPE pkgmetadata SYSTEM "https://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <maintainer type="project"> <email>sci-biology@gentoo.org</email> diff --git a/sci-biology/stride/Manifest b/sci-biology/stride/Manifest index a9771308a58b..6cc2d80658b5 100644 --- a/sci-biology/stride/Manifest +++ b/sci-biology/stride/Manifest @@ -2,4 +2,4 @@ AUX stride-20011129-fix-buildsystem.patch 807 BLAKE2B df077f9234808abe3a9346af6c DIST stride-20011129.tar.gz 56441 BLAKE2B 4d4cd3f9f6cef997fff10571aecb70cb21056e88c5130e7dfdafe15a6fb353656d0635b4d65895ef115479a87dcf600b659455d15460344c838543a2e356bfae SHA512 cbd40fce4684728f363520540132fc1a0003126954a145d59aeff48adb20fdaa66520bd12b56ee5d2906e8ea97bf78a225204105b820f7f368aee5e790a6471b DIST stride-20060723-update.patch.bz2 5621 BLAKE2B 266a7371c0963a996430c1f809b46196e8bf179fcf2afb4380f6eccd092c03b29d5b09b8a8438ee7848d0f411920db2e4465ef646c75a406197412f35e880179 SHA512 e06eb68b907615e12dc1a9981be157400e9ffed9391a906cb4eb3ef4067b7027c26cc600298053bfc5d2bbbebbbfefe0e6b18d0e4f6fef2172768e6f95498af1 EBUILD stride-20011129-r1.ebuild 808 BLAKE2B a8d8b0e99693d446ad7d7c7d3127ef0a3c586f67c93b92bd9625a87169db0234f068a8bc2233342e12fe4ebba8b59233885e5ded0f5f6e18e706b9fea74be486 SHA512 edef456d53d58218454a658e35e4751227dfbccfca810b014a361eb96c2727087e5b831ef32d999b79c4c99680898a063785f3243ea3904a3edba40a2d1fba69 -MISC metadata.xml 267 BLAKE2B 7cf386952842945148119de3263231db4d1046d5f54811f7e303ed8ec4d27cbc1960b99c92daf6f32e5b981c2fb9f50ec666be6193865d6e18541b7427a152a9 SHA512 91ab266d9ab24401bc0fec759c5b6cfcf44a3c5669fc31c7301d79770839bb5dfa0e155d949392ef06176b4a0b2c32b91b1b54b0027f972db61f0a5e54644403 +MISC metadata.xml 268 BLAKE2B a4d67334cdad8626d60e46b677ee1c83f569e5e20b3739a7664bb33be1829f8478af35e135bf734a6ff151b8543ea6c4ecafbf822cee8189f7e7096bd9698711 SHA512 59d3d8213b1a219396b74b6f4188c01e1cb4eb1c63e6792ce1e7fdb8000d1a4625919337ff77288ca7f7e07d9753f481d2381a06f554012633cd678194c980de diff --git a/sci-biology/stride/metadata.xml b/sci-biology/stride/metadata.xml index 959160fe46b1..ccdff086e20b 100644 --- a/sci-biology/stride/metadata.xml +++ b/sci-biology/stride/metadata.xml @@ -1,5 +1,5 @@ <?xml version="1.0" encoding="UTF-8"?> -<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<!DOCTYPE pkgmetadata SYSTEM "https://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <maintainer type="project"> <email>sci-biology@gentoo.org</email> diff --git a/sci-biology/t-coffee/Manifest b/sci-biology/t-coffee/Manifest index a37eb2942b96..304c7aff815b 100644 --- a/sci-biology/t-coffee/Manifest +++ b/sci-biology/t-coffee/Manifest @@ -4,4 +4,4 @@ AUX t-coffee-11.00-mayhem.patch 1230 BLAKE2B cd54632fb5760f9d76d9e72d69c2d893e08 AUX t-coffee-11.00-set_proper_dir_permissions.patch 1203 BLAKE2B 220f1932cfab4f3d39cfcf3191754c2a2705c75c9cce8f11d04fb3fe8e3c3e60a10251b01c2109faad2fda4a5ce57ee5e5e598a0ec841c3bb0fa19d0e8e4d636 SHA512 fb19aae00ccc0824bcb757d32ee921159e9ece9c0336b3d663e0140ccfca77bf3fcce0eeb304517e41dc1dd4c9469c345c0c35fe8e7fdf120c6fddba4a4e1524 DIST T-COFFEE_distribution_Version_11.00.4466924.tar.gz 3502302 BLAKE2B 0d8087eb219ff72e6f478a779ccdb51e7aee861236c522dec5391e854b0b0bf6eab324009686237e6d334d2e13e17700f6692333060a2ed55711380ef2ab2cdb SHA512 c6c1a7b768156f8457dc4c53a77b14ce0b85e591d60762faf6e6f6f3b60dab75e99449d55b42ef3af1c90e244f735e19abb72d0ce871bb9fbfbb8d1641531293 EBUILD t-coffee-11.00-r2.ebuild 1163 BLAKE2B 7b7dd0de076fa4bb9ac5b59d55df39a118b19f333851beccceeb511f3a780f5bfc2128b29cabd0304320810ea373ed15971eb061604da87d8aeae427876d9167 SHA512 7701957be90259bc4cac73bd3a280d5181432a1d6d30c4223fa4b1c6e497b50ec60b605a5a609068d9139bc3bf3183cf1d1860ece76542952dd3a289996d2b87 -MISC metadata.xml 762 BLAKE2B 38e430b2aa0736102b7c8b958c3854723f0d5c88a9301240f9a20d8cdd6f24628ba735aea82d7a379b93d93dc3845e963e9624045933886a2bc09658eaf7827c SHA512 fe31bf756f5e3dbb048e691ecd01ee86000f65ae4f5c19df3c5c3e2deb7fb8ffa83ed39c317188302a8cf2a0d152323a0258497cfb0e3e355dded08b060d0310 +MISC metadata.xml 763 BLAKE2B d7fd6d3ee9aba1f0b2bebf30b80682da45e3032ebf4edec325ecf372be119a046c32ee2780e646b4fe7aa83ec5930f74e33361b18be2efe794bdb273b7e3df0d SHA512 20b588201c48e90cac001b26dbb780eb70204f876a603f43cef5a7ff75c0f1431de5982dd5c1be8047a00fbd9edee9d433d808c2c6c193cd2a9fe4d5c64e8459 diff --git a/sci-biology/t-coffee/metadata.xml b/sci-biology/t-coffee/metadata.xml index b3853e6454a3..6dd147768742 100644 --- a/sci-biology/t-coffee/metadata.xml +++ b/sci-biology/t-coffee/metadata.xml @@ -1,5 +1,5 @@ <?xml version="1.0" encoding="UTF-8"?> -<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<!DOCTYPE pkgmetadata SYSTEM "https://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <maintainer type="project"> <email>sci-biology@gentoo.org</email> diff --git a/sci-biology/transfac/Manifest b/sci-biology/transfac/Manifest index 91a08d4af57d..c4eeebdb8540 100644 --- a/sci-biology/transfac/Manifest +++ b/sci-biology/transfac/Manifest @@ -1,3 +1,3 @@ DIST transfac32.tar.Z 3346266 BLAKE2B 3bd6cfacd7e4ea75946dce5e77bae84a7d199daa84750fe21cd3c393fa66cdf09518a4043ac15f2fbe7bc19f001482e14b65743f1a89aec34bcb28409277370e SHA512 d7004f90e57fa2b8839714e50b9ce1f67357db404adc1a5caddd1e9b86c8e3e9f4e85bbda15c4d6afed85da82ae8615f63260f9a3df9cfd79897d38896893b9f EBUILD transfac-3.2-r1.ebuild 999 BLAKE2B 58cbaa6a935993519549d6dfe768fa5f5a5a8eaf70ce0d42e03d3dcc72a25067a81f8b695a0a001f8c698f7132cda44a1761a975a081409a6edd8f8feae986b1 SHA512 7b3680b0fa6887ea1214f7f90e5bd979f8111f995e037fd0eb7ec8d129117bb5721c2aa185301ad0b57c2f83d2abf4bdc2d478be726d54ddd0d09ab8c969dc80 -MISC metadata.xml 696 BLAKE2B c4480adb945588e14915f75dd16a70db6a36793832241e103da6bd6e81aa00dfa20a6f2b2ba8344eba38dc986075279c1fc3c4287f00f567fa34e8d14b552157 SHA512 22cb9c39a7dbd3830cc64082657d8ab0b04b217f3540c912c1f06256e45a285ae9fa56a334ed5ccda2c58fa4a9407977c8f26906cb3e7000e3a69270dded6159 +MISC metadata.xml 697 BLAKE2B cfcb8ec7dfc62e50cbec8a92bb511e39577203ca2743a6e9b845a257553428cfb0ef4b5793309c59dae581e0faa58f077a19aee9c8036dc16dccaf01dddeb32a SHA512 0cf54f59885bff6391873c4db379f321c08e0357e24335fe18debcb52c6126ba44feb03fb3a1edd7731460395601b3eaa4e9a79f7faca2f018892831672c0587 diff --git a/sci-biology/transfac/metadata.xml b/sci-biology/transfac/metadata.xml index a8cecf4529c2..daa74b549bb1 100644 --- a/sci-biology/transfac/metadata.xml +++ b/sci-biology/transfac/metadata.xml @@ -1,5 +1,5 @@ <?xml version="1.0" encoding="UTF-8"?> -<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<!DOCTYPE pkgmetadata SYSTEM "https://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <maintainer type="project"> <email>sci-biology@gentoo.org</email> diff --git a/sci-biology/tree-puzzle/Manifest b/sci-biology/tree-puzzle/Manifest index 4805dbe3df20..4b698c6a885b 100644 --- a/sci-biology/tree-puzzle/Manifest +++ b/sci-biology/tree-puzzle/Manifest @@ -1,4 +1,4 @@ AUX tree-puzzle-impl-dec.patch 380 BLAKE2B 22c00e2e0b4682a98212ec0b6e941ac37eff4cdeb8f684dc607e80a1617a35e209d23ac739af0e69af91deb8122fe04c3f9e7bdbd0c54edd8e603a817bdf0848 SHA512 092743fff8a305a41ef55afde3e058c1892d9c608bd05cb87de38a451c2b9cafc7749825347d5c245f1c6b1e84cf9d28b63bd4e7389440da5604766412290110 DIST tree-puzzle-5.2.tar.gz 875142 BLAKE2B aa13e9a7aa403c12aebefb94a1931baa8b17cbee56d20011cb06db5a7b1b7f78c719ed6c6bfb0b79e47dc652d7b984415694907fc6cd56bdbe9eebca4aaa96a8 SHA512 5b9a729b120cba59f59ba426acd439cf396826ea01e75361b23387ccb9baf295d2512f21af96071a5f7b7507db4ff4d6b135cf6c5b6233a8b438532d31abe751 EBUILD tree-puzzle-5.2.ebuild 1290 BLAKE2B e02eee43fabed81ca8d164630aa720365eb1cdab5660b878a750138b4dbdda42e3d04da4b0f3f404b45852e26c5ec56f005aa54cedfdf63d4e98718b2f0be145 SHA512 fa04a780ca5680424507123a007856fd442245812b03621efb29215bb8b651d19d5874904a6f4791d446f95f97cee676c2ac33554d4b893ed7068e3ecb70eb1e -MISC metadata.xml 1555 BLAKE2B afe1aecc51f612aad5b1fd991ba020fe15cf5336c0cd521330394ef486a786e088f8a85d0b89944f75557109c56409709e92d62bbde67f8f1f41ef015dcf3bc9 SHA512 d74b3243cb62071c16a1728cb14e4c226644b8116dc032ac2d74a928260a252334583d1867ec3663533f36fa1bb746270f1d33f6fb4bae220af86eba668307b8 +MISC metadata.xml 1556 BLAKE2B 1f8b1d4719d156e9a9783adce70d8f4c0c17a7c855e5590bc796e16062066883a27f780946edaffdc04eb6f640ac7e81d71b075ebc5ed9759c2a5d4da20ac46e SHA512 07bd436f7616301172b07fefd72390a46778098baa3e9db949169850a60cd40e27a0e58dcafe5689923bc1e7cebb4e317a291f5caf2750651b76c447f5799215 diff --git a/sci-biology/tree-puzzle/metadata.xml b/sci-biology/tree-puzzle/metadata.xml index 4a34df848e3a..8e14900c2855 100644 --- a/sci-biology/tree-puzzle/metadata.xml +++ b/sci-biology/tree-puzzle/metadata.xml @@ -1,5 +1,5 @@ <?xml version="1.0" encoding="UTF-8"?> -<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<!DOCTYPE pkgmetadata SYSTEM "https://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <maintainer type="project"> <email>sci-biology@gentoo.org</email> diff --git a/sci-biology/treeviewx/Manifest b/sci-biology/treeviewx/Manifest index 5517b87297b4..8bd289d18109 100644 --- a/sci-biology/treeviewx/Manifest +++ b/sci-biology/treeviewx/Manifest @@ -9,4 +9,4 @@ AUX treeviewx-0.5.1-wxstring-maxlen.patch 1438 BLAKE2B a2dc6fe39c0312559628b61d8 AUX treeviewx-wxt.patch 1716 BLAKE2B f869d1d90dd23a7f0e242d9c1d0b0b97e0e053b5b2f00b283073f6e7f2d714cd2bf23656e65af1f3496bef0bf681ebb0618024f259b7f4d6dea777b048a438e4 SHA512 97d074e9501000099d0c5b3e3f56a796b1526499d4ccb44ef6f0b851bde1c27fc78bbc64f439ba5ecd3afa531b752c69148d7cd3b1e5a08a01566ad6155ce25c DIST tv-0.5.1.tar.gz 426745 BLAKE2B 080c4e09f441fd83da3406990bbe97f9e29fa531f47a65533ca887580f8a3ec561bb4766e66e2ef4764f68eee86fdabf48481cece56ddda90f9ffdc3c80b3a1a SHA512 45a7ac6dff5b22771e4428d6b1ee528c0039956a462658d28d4f588b6df32620d8f69b3bcf5ca23643e2bdd5361da00625fcb1495bcf4f74d44ee22022c63143 EBUILD treeviewx-0.5.1-r3.ebuild 945 BLAKE2B bdfd7f287e29287d8679657583ed738d2806e5dd175055a7c54058e14e4aba477509ae2a1a0677acdac3afad8030739f0511e1193059298cadb9e112ab75a36a SHA512 bb7bee425669dada45f106f0afdc5f7a6d2d17ea1fe56015c57a63402a6a0afcc777bffc06ac4cbc422dc03367cc4ef5633973260a845aaf78324f114a3182e1 -MISC metadata.xml 530 BLAKE2B e28ef45f05b4ade77b26155b743afe8e72989065c4dba57b7a645e738366afff1d99c827dc1ea1f5cdb192ae2ef790be6de9a6905eeebd58e792e5d4e02b0dcb SHA512 28c429150fb8df5db3205b352f077fe431f3e2ca530195468a340909a3b37882fae67e05452a7810ac34ffb8a02979625b48c28285a7d3abf31004238fce1463 +MISC metadata.xml 531 BLAKE2B f64e8c2245f0f7e72ffae3ba9f3b7c4aa0a33b769fe3ccea91c3584c8812fefaa96ad6a7745ca2afe18b1f8692e4dbf67c71009a43a2bb00be3643f2822f2b02 SHA512 66338bf8a4993325ed69bac97d1ffba8421aeaf6ceaafd6351f583fb8ab4528c0a0d70ea28b967babce004f5f3510a04a18e2d8bf549526939a7c8295d395b97 diff --git a/sci-biology/treeviewx/metadata.xml b/sci-biology/treeviewx/metadata.xml index 8683bbc5f8f7..c5486e4a16db 100644 --- a/sci-biology/treeviewx/metadata.xml +++ b/sci-biology/treeviewx/metadata.xml @@ -1,5 +1,5 @@ <?xml version="1.0" encoding="UTF-8"?> -<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<!DOCTYPE pkgmetadata SYSTEM "https://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <maintainer type="project"> <email>sci-biology@gentoo.org</email> diff --git a/sci-biology/trf/Manifest b/sci-biology/trf/Manifest index b6aec7e89d0c..431866ac4fd4 100644 --- a/sci-biology/trf/Manifest +++ b/sci-biology/trf/Manifest @@ -1,3 +1,3 @@ DIST trf404.linux 89853 BLAKE2B 36abf95c88a5b8793e875a276f1494af4df48ff3b3f095e07683589d84eaadfb54099c1764dcd437158c356dcd9d55dd274e7e41515ef098ee2a929493cc0d83 SHA512 c1aa05e394d47ea153df3082258f9a089aa59976963e9ac5d5816ef9dcd95c47e2e46861d1b2aae52b5ea9950a823a2449dd0d8426b04f2b738f5552c319393e EBUILD trf-4.04-r1.ebuild 623 BLAKE2B 10cf833dad7e73bb63485452cc6cf0f16517dc859eb37da8a366e5c877bf71469193527dccfc43d6fc090916b09e62eac04323a26a6bb57e6d611c2e201fc8e7 SHA512 a879d5171ebbb5fff9157d05c7f8413044758be60a5d4d790d779f65d3c8b16ac72a9a942f12f651576bd5082e1cb1171471f9886e5eba459903b473a7b07af1 -MISC metadata.xml 267 BLAKE2B 7cf386952842945148119de3263231db4d1046d5f54811f7e303ed8ec4d27cbc1960b99c92daf6f32e5b981c2fb9f50ec666be6193865d6e18541b7427a152a9 SHA512 91ab266d9ab24401bc0fec759c5b6cfcf44a3c5669fc31c7301d79770839bb5dfa0e155d949392ef06176b4a0b2c32b91b1b54b0027f972db61f0a5e54644403 +MISC metadata.xml 268 BLAKE2B a4d67334cdad8626d60e46b677ee1c83f569e5e20b3739a7664bb33be1829f8478af35e135bf734a6ff151b8543ea6c4ecafbf822cee8189f7e7096bd9698711 SHA512 59d3d8213b1a219396b74b6f4188c01e1cb4eb1c63e6792ce1e7fdb8000d1a4625919337ff77288ca7f7e07d9753f481d2381a06f554012633cd678194c980de diff --git a/sci-biology/trf/metadata.xml b/sci-biology/trf/metadata.xml index 959160fe46b1..ccdff086e20b 100644 --- a/sci-biology/trf/metadata.xml +++ b/sci-biology/trf/metadata.xml @@ -1,5 +1,5 @@ <?xml version="1.0" encoding="UTF-8"?> -<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<!DOCTYPE pkgmetadata SYSTEM "https://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <maintainer type="project"> <email>sci-biology@gentoo.org</email> diff --git a/sci-biology/trnascan-se/Manifest b/sci-biology/trnascan-se/Manifest index ac6023c4cd64..5f9151c72b1e 100644 --- a/sci-biology/trnascan-se/Manifest +++ b/sci-biology/trnascan-se/Manifest @@ -1,4 +1,4 @@ AUX trnascan-se-1.31-ldflags.patch 973 BLAKE2B 1aeae4e2e5a513caea6eced215e891a42e3ed650d02cf68f3874e20bc5b6b833cb4041ee3cc8fb4fba774143e247908e68f53d4a2b65bd77c32f857366be9621 SHA512 ff677ce9ac3ed9299f6a3bf977642e2a6c300a1b801436bb5d3787968cfe28357a0ec23d0438f0b15c06324cd7e1bbbda590c8fb5574577a3f653779316931df DIST trnascan-se-1.31.tar.gz 740960 BLAKE2B 995bfb7ad9f9d46543f15a36134aaec6c27921144c8900a323dbd6152f25e1faa587b5c817dcb8cb838dc1fde8ec7537e5fd6ca8930a4dd1aaadce41c575d651 SHA512 ba55bc8dfa7e5aee9c9a86c135a55b767cda083b74668bd9af4aaaeb693f9c3a17dc8bade5793de12b775564f09fbb861b0ab4f25bf83ccb0954fecd01bb328d EBUILD trnascan-se-1.31.ebuild 1191 BLAKE2B 8d492f11917a53e478d1f146bd55ee57b2c1ede4b1206fc419f86fd9acc1f73c30459b159836f8b0c946161cee16ba0cf0131d2635ce67708bd70c56c682f194 SHA512 d79fa9d244d4f3ab98fff94aca074bd23cc953c0b812a270daca2e80c440fcdcfd38e92cba2eea6ccd2ad9873c8fb898f46b9f4356c638d01fa0f2b21e23c55b -MISC metadata.xml 601 BLAKE2B 3da1b6ae272a5d072ed7b6c7a83ad54e1be9076d09ca4978838b6cb745146314c7161a98df7a6840bea65278b7ec525a1d5f3d35327afa44cfd202090df1df46 SHA512 36a89f38018a8beba2f9c299ac19774fc379e43ede78f8d120fd167139f42b2aadd2a4a4577051ea77bc74d7be6c4e23aeb1c3846a676d72780453f4f2db001c +MISC metadata.xml 602 BLAKE2B 8f0a2a924d5e25b00f3850b903de327eff6811931047cd282386837db9d7905fa0a384b36821aea7c869d5da38969a6efbb43c3f1fd1d82dba50919bdda64172 SHA512 ace918d99f937c74013b854b34eaaeb0404dab2e5e9c21bcf876b471a617db7008cd1a7062a83dd00ba3e69027391a0b81915be8560a10d3ff9062c21862c0c2 diff --git a/sci-biology/trnascan-se/metadata.xml b/sci-biology/trnascan-se/metadata.xml index 39da31794ca8..00b47df661a7 100644 --- a/sci-biology/trnascan-se/metadata.xml +++ b/sci-biology/trnascan-se/metadata.xml @@ -1,5 +1,5 @@ <?xml version="1.0" encoding="UTF-8"?> -<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<!DOCTYPE pkgmetadata SYSTEM "https://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <maintainer type="project"> <email>sci-biology@gentoo.org</email> diff --git a/sci-biology/uchime/Manifest b/sci-biology/uchime/Manifest index b9dfe31e446b..ee70a3428de9 100644 --- a/sci-biology/uchime/Manifest +++ b/sci-biology/uchime/Manifest @@ -1,4 +1,4 @@ AUX CMakeLists.txt 589 BLAKE2B 183caf5f107482c410296eee8136271e261696a3c11255960b840bd4db16cf461c386fa7374b3a2afb3fd38e97593ad98f9efc621104106cfe4463939c6d0d31 SHA512 06e9f9c8806c27b268968b28fb6059fc6d52295a5d38635612728ac577656fcfae5eb6b15c63e3e9de57e1c8cac832cd4dff70d8a6f3182358a5eb06eb354642 DIST uchime4.2.40_src.tar.gz 66772 BLAKE2B 9133853d616ab6e1e6a397da78fc846ba00fc70c2c375eb16a98fbdec25ba6034bd1c876b7ec4a99305e76e47cf7984c1aa30b64bdc96e125f661a0150bae060 SHA512 c3afecb23d164d9c3db6229f54faa13120ac4d88132d9aef707f8d043091099db4205ac80f60242920af6efc23813b3e7e4966d562bdb75ff53244fd525e656b EBUILD uchime-4.2.40.ebuild 654 BLAKE2B d9ddacb096c43c43858f4b4f572304543c7f5ae059fe9c4a8696d1debcd3304af88f360f312fd470ee9f3c733460840537835dfa67a446a18e4bdab6b460a278 SHA512 a7274df383897140b4db99610a2f0fea6b5364799f32b660b78c2e8ef6d9f59b8e629e331629b3b5877380f0e9700967180216e7ad9235f308389c754bc083e9 -MISC metadata.xml 896 BLAKE2B 1041ed416b2ba4670f85856ed2bfe1508d3bea0a310a29a9265b04372df51ee39090d76fa6a282c908e26541986bd10dd47ea73260d5180fe382fc97de556509 SHA512 641d91bff3651a49a3b7e15260cf2a758199ae49ece16643d3104f0f4e202938935edeb3bef18f7afc40a4eb1b1b3e469b07fec95d30a5e686e4b66535ff3e7e +MISC metadata.xml 897 BLAKE2B 26b02bb269f1861d54e723709c38bf2f0f14f146f1175cbfa4d9205ae9a9abec9799d782f715a05c79978a033da8b4c4e8a49461c10091855c5dc1b68475fec2 SHA512 951065ffbcd5a5f974669044acb3b6b73cfa99c375f563707a93277752a0b414521a7e4dda3b40b9272d635cf105212b1053c188e141b0d5674ebcd3d48e66ed diff --git a/sci-biology/uchime/metadata.xml b/sci-biology/uchime/metadata.xml index 8e8ff4997171..9933caa5fd2f 100644 --- a/sci-biology/uchime/metadata.xml +++ b/sci-biology/uchime/metadata.xml @@ -1,5 +1,5 @@ <?xml version="1.0" encoding="UTF-8"?> -<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<!DOCTYPE pkgmetadata SYSTEM "https://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <maintainer type="project"> <email>sci-biology@gentoo.org</email> diff --git a/sci-biology/ucsc-genome-browser/Manifest b/sci-biology/ucsc-genome-browser/Manifest index a70b216f346f..13c0c81fd95e 100644 --- a/sci-biology/ucsc-genome-browser/Manifest +++ b/sci-biology/ucsc-genome-browser/Manifest @@ -1,3 +1,3 @@ DIST jksrc.v260.zip 59090224 BLAKE2B 755bb97f50cde97e7634f38aa81f0843de52710cac78f5b0a2ee6129cffc99f730b8e1ab41d24e2faebb3c0a3e1d1309c84307e2dc4af1efe9a30fb0b9ae1670 SHA512 48aa964ab3ae456ab7e7ddc5d73b91774bd4892f21f1498578a5de38d3a07e4684778ddb1ac1ae389d5bbb3586f9b8506ca3697acca1f6777b85d343cf5d9485 EBUILD ucsc-genome-browser-260-r1.ebuild 3134 BLAKE2B f9b628c78939377f66c9aca6b68ca3cbebf7c41dde18a8d03dbc4533593069dff0381d0fe206b0287569739a96010661d275c2d43a8ffc9e1ad8f73b4d73be5e SHA512 6f33bd29ac24661d8a495913b6746d60ca4eb95e91e5ca7325420a9b430f9ca8fe990d9167ab2ffd500f151f8cce045601e1dde24efde05b185511c1b06593a7 -MISC metadata.xml 435 BLAKE2B fb242aaf17920e320c65bbd8bf83c79ffc0a9e97c112e2e19f89ed9c0a3fd2e48e7444c81dd82bc30b38c1e9251737d93bea310f77ddff5a183301276588b1a3 SHA512 1acffee210c77abc41a93b5b78e52b27ed18df50a2eff3c6463e34bc031a4b2c97d1472a0dcf14bbf513c77d930a67434194c2e5ac435a5f7fd1e79294335a81 +MISC metadata.xml 436 BLAKE2B f0bf2e08eaadf20a1810abf0e3cd42494197b8fe2593c5f3ee243f58af5676a795009fefbc7f11d2d8e4d42ff9e34790dd7be9999a37839fe6ce780b12714116 SHA512 43d2b6e4519270b495122711c747c906ba64993811a6f4d63af5fc17a6752232dde3717f193432d673e2c183e35fb88421a39077d3d0dad18b712d26c6e64caa diff --git a/sci-biology/ucsc-genome-browser/metadata.xml b/sci-biology/ucsc-genome-browser/metadata.xml index 042f7b949ba9..6cc5e40e4d6c 100644 --- a/sci-biology/ucsc-genome-browser/metadata.xml +++ b/sci-biology/ucsc-genome-browser/metadata.xml @@ -1,5 +1,5 @@ <?xml version="1.0" encoding="UTF-8"?> -<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<!DOCTYPE pkgmetadata SYSTEM "https://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <maintainer type="project"> <email>sci-biology@gentoo.org</email> diff --git a/sci-biology/unafold/Manifest b/sci-biology/unafold/Manifest index 818622d6ba58..4a2a02fb5201 100644 --- a/sci-biology/unafold/Manifest +++ b/sci-biology/unafold/Manifest @@ -1,4 +1,4 @@ AUX unafold-3.8-doc-version.patch 308 BLAKE2B 6fba108c6338f9b974fc20e328f9af7d4ffc735889a32b74e36573ed68453af11922c15c626c48b997784378ad9cec79fe928ef184a224bcca570c7d59158851 SHA512 53a7ad53704830ac50fa463fb340cd8823e57af83b97ee40a969a338af62bce11934bc54b37a43b4f5bdd4faea919b2e3b4d8532926a8c185f53dcb5ce3c5afd DIST unafold-3.8.tar.bz2 282418 BLAKE2B 0dddff9dc440362ce3b24d18f42aa47d2dc817de93eba900de76dc73393feabb09ac57cb77af6c8db0ab8c0958f0fd459911fd813fa004b616fedffe9aebd069 SHA512 4c83cf0122e4d4ec2b713833adb11eb608b0f880f5b68114aefd8c7fa980c8d02f9a6cfc0c88cd640b4457e65954b05189118e8ac5ed207b2f9910738ca71a6c EBUILD unafold-3.8-r1.ebuild 609 BLAKE2B 4f6e5867e63d272781eb88b6cfef00e41a067b7e97a8c61ee0e5c380369e155452afa6c35f153a3b3c39ea54cd02c2ed039ea793fb0f52b7afc91bf45e2c8ca4 SHA512 3ffe39a79f0162a645237cc5c4763abd0b41775f09546d2cf792ed9dcfe30219ba9540feac3ae8758616c5f0f48de3b7643b17d6682cf426a8f9f799e509b9e1 -MISC metadata.xml 267 BLAKE2B 7cf386952842945148119de3263231db4d1046d5f54811f7e303ed8ec4d27cbc1960b99c92daf6f32e5b981c2fb9f50ec666be6193865d6e18541b7427a152a9 SHA512 91ab266d9ab24401bc0fec759c5b6cfcf44a3c5669fc31c7301d79770839bb5dfa0e155d949392ef06176b4a0b2c32b91b1b54b0027f972db61f0a5e54644403 +MISC metadata.xml 268 BLAKE2B a4d67334cdad8626d60e46b677ee1c83f569e5e20b3739a7664bb33be1829f8478af35e135bf734a6ff151b8543ea6c4ecafbf822cee8189f7e7096bd9698711 SHA512 59d3d8213b1a219396b74b6f4188c01e1cb4eb1c63e6792ce1e7fdb8000d1a4625919337ff77288ca7f7e07d9753f481d2381a06f554012633cd678194c980de diff --git a/sci-biology/unafold/metadata.xml b/sci-biology/unafold/metadata.xml index 959160fe46b1..ccdff086e20b 100644 --- a/sci-biology/unafold/metadata.xml +++ b/sci-biology/unafold/metadata.xml @@ -1,5 +1,5 @@ <?xml version="1.0" encoding="UTF-8"?> -<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<!DOCTYPE pkgmetadata SYSTEM "https://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <maintainer type="project"> <email>sci-biology@gentoo.org</email> diff --git a/sci-biology/update-blastdb/Manifest b/sci-biology/update-blastdb/Manifest index 8c4972f793b2..16f9e7384daa 100644 --- a/sci-biology/update-blastdb/Manifest +++ b/sci-biology/update-blastdb/Manifest @@ -1,3 +1,3 @@ DIST ncbi_cxx--12_0_0.tar.gz 37925914 BLAKE2B 45490961293d8b3ace24c21602f4039041003f9b45d9f1763957c97ba1e55d6d336c33b6116262b2e774cc26b9366cc3d61bead0c0c7fbd4c461cad2921d80d4 SHA512 1a79f2d95960efde6263289814102499460ec235dad36337dd398d668665e44015e06e40fd0e66a8fb16f526d326949adcaadcb667debeba5d8570b1a92e30ed EBUILD update-blastdb-12.0.0.ebuild 590 BLAKE2B cdce0586b4f0f74dc8e541830cd36b6e75098a9c741337ed9b07697c3d32d7637bf8d2da02d300540526affb25d34876738008fb732ff0fc59db3ba2e89c3429 SHA512 641587a3b01422516add65044172b56c0825e4b26b32171c9bc728b4e7fcac5a8de4bdb89fad1cc11e4e84ffea90b02bd704110086ce34a26cb4bc698be6d0e0 -MISC metadata.xml 267 BLAKE2B 7cf386952842945148119de3263231db4d1046d5f54811f7e303ed8ec4d27cbc1960b99c92daf6f32e5b981c2fb9f50ec666be6193865d6e18541b7427a152a9 SHA512 91ab266d9ab24401bc0fec759c5b6cfcf44a3c5669fc31c7301d79770839bb5dfa0e155d949392ef06176b4a0b2c32b91b1b54b0027f972db61f0a5e54644403 +MISC metadata.xml 268 BLAKE2B a4d67334cdad8626d60e46b677ee1c83f569e5e20b3739a7664bb33be1829f8478af35e135bf734a6ff151b8543ea6c4ecafbf822cee8189f7e7096bd9698711 SHA512 59d3d8213b1a219396b74b6f4188c01e1cb4eb1c63e6792ce1e7fdb8000d1a4625919337ff77288ca7f7e07d9753f481d2381a06f554012633cd678194c980de diff --git a/sci-biology/update-blastdb/metadata.xml b/sci-biology/update-blastdb/metadata.xml index 959160fe46b1..ccdff086e20b 100644 --- a/sci-biology/update-blastdb/metadata.xml +++ b/sci-biology/update-blastdb/metadata.xml @@ -1,5 +1,5 @@ <?xml version="1.0" encoding="UTF-8"?> -<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<!DOCTYPE pkgmetadata SYSTEM "https://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <maintainer type="project"> <email>sci-biology@gentoo.org</email> diff --git a/sci-biology/vcftools/Manifest b/sci-biology/vcftools/Manifest index 14c868e8fd07..289dfe002b36 100644 --- a/sci-biology/vcftools/Manifest +++ b/sci-biology/vcftools/Manifest @@ -1,4 +1,4 @@ AUX vcftools-0.1.14-buildsystem.patch 1159 BLAKE2B 9eaa626c82b4d23e75f2d31ce31c6161996eb743efbdcb81ad4c3ba306b76a710c4b22670d68178da1b7d2e048d02aea44132f3009d5792dcf248368b53c3482 SHA512 838cade29bbeeee090ea52f546c37b68eee868f3329ceccb710da0dbcf0f14e1b18dcc7b05ceefdbf72d400f450374389649f56fc6981bd86f6e176469b054ea DIST vcftools-0.1.14.tar.gz 342369 BLAKE2B 14be867c0be41767e2c97c8be212f3cff495c1cb6699294fb8a26ac491901599cd1e400cb80c6d609dce36584ee5defdb3b3652657bd127e0c67c5b29a842cc5 SHA512 863a16b3b20d392deba7f04310af95f1ab21be537273692aa104e22d737af2eb1bc54a768af954f06188e0500e4f7a032d1189886eb3a439b108cb8189b14eb7 EBUILD vcftools-0.1.14.ebuild 867 BLAKE2B f25ccc182927cd888c548f4eeb120c526716fc759dc7b8081baf76b9f4cd3a404a2828168577000ff816b02aa8d3e6fec52d883fdc2e6f2ec40f1a9712d024d1 SHA512 260555d8964cf329fe3710547b6ddb5600674525703d0b802d18c2a41d02271ff77c56c4d49bf9fb67966bce76a3d6addc88c5a1e86859425bf0574beecc2c34 -MISC metadata.xml 408 BLAKE2B 6761b0e43c90b406c9b1253e6f4757f2c1249a5a658eea3be97fbd24d6d1c591ab60abb5b0e3b58f17dbf68e1839b2a0ab12516f903e0d5966788ef6db570666 SHA512 c66cea65d0d2ae25a9861428387f3582dc490dabc6d5de2087f475e6fa0259c2167173c2d916a0293a35db64d46f9faa7f9f70d0a6c19efde2e98f5144e27007 +MISC metadata.xml 409 BLAKE2B 8b6096c95135edaa86244af0fa6c7da5eb131092dc6ff25108723c64183275727c49d9c1fd0f2c4805a3daebc780833e0d03127e58bb5cde3c6ee999b2fca68e SHA512 276a72290a191a7661f130b941ce81dd017242fad97f67efbbf84d9586d097bf5131b12f6fb4bf5f8dc18ee0babcd89d836692b2d912fea5bf90fed18e16885f diff --git a/sci-biology/vcftools/metadata.xml b/sci-biology/vcftools/metadata.xml index 95be401e9e2e..b48544aee61e 100644 --- a/sci-biology/vcftools/metadata.xml +++ b/sci-biology/vcftools/metadata.xml @@ -1,5 +1,5 @@ <?xml version="1.0" encoding="UTF-8"?> -<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<!DOCTYPE pkgmetadata SYSTEM "https://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <maintainer type="project"> <email>sci-biology@gentoo.org</email> diff --git a/sci-biology/velvet/Manifest b/sci-biology/velvet/Manifest index 7698aa2dbbc3..2edf4614a91f 100644 --- a/sci-biology/velvet/Manifest +++ b/sci-biology/velvet/Manifest @@ -1,3 +1,3 @@ DIST velvet_1.2.10.tgz 18818559 BLAKE2B 5723c9c040e570cd88b774e5b0044dd04def88778fe2b137ec7c007ab83fc98e5423ad1d9d0499780cf6d3152347ca1a4e4e6b6c1900ce4adfc4930f1f6d3c34 SHA512 a6f3e35cebceb22cc10e83088b8cd9758492da78866237cae63d8826d6f5cfb44d82dd8bfcb1185d37cd434d4c7a0f2ac7135bb80a51db86e754afd6156ea874 EBUILD velvet-1.2.10.ebuild 2085 BLAKE2B f0aa88a145341553ad74006189dec738a05a29620a4f90843daf4f4e3fd2bce857836b1332c2fee4764db63a202c6b5a908f97dd7ae1e654f24c51e04c865065 SHA512 4a61a2df8715691deba0dfb22b6e8ca049e655e55e82e620a25af4de625b6e43757963942304983145c9b7a29751dbc90aa3854fdb9496a50622d4b5b0d677ed -MISC metadata.xml 267 BLAKE2B 7cf386952842945148119de3263231db4d1046d5f54811f7e303ed8ec4d27cbc1960b99c92daf6f32e5b981c2fb9f50ec666be6193865d6e18541b7427a152a9 SHA512 91ab266d9ab24401bc0fec759c5b6cfcf44a3c5669fc31c7301d79770839bb5dfa0e155d949392ef06176b4a0b2c32b91b1b54b0027f972db61f0a5e54644403 +MISC metadata.xml 268 BLAKE2B a4d67334cdad8626d60e46b677ee1c83f569e5e20b3739a7664bb33be1829f8478af35e135bf734a6ff151b8543ea6c4ecafbf822cee8189f7e7096bd9698711 SHA512 59d3d8213b1a219396b74b6f4188c01e1cb4eb1c63e6792ce1e7fdb8000d1a4625919337ff77288ca7f7e07d9753f481d2381a06f554012633cd678194c980de diff --git a/sci-biology/velvet/metadata.xml b/sci-biology/velvet/metadata.xml index 959160fe46b1..ccdff086e20b 100644 --- a/sci-biology/velvet/metadata.xml +++ b/sci-biology/velvet/metadata.xml @@ -1,5 +1,5 @@ <?xml version="1.0" encoding="UTF-8"?> -<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<!DOCTYPE pkgmetadata SYSTEM "https://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <maintainer type="project"> <email>sci-biology@gentoo.org</email> diff --git a/sci-biology/wise/Manifest b/sci-biology/wise/Manifest index 5c4fc9140392..ef116db4e371 100644 --- a/sci-biology/wise/Manifest +++ b/sci-biology/wise/Manifest @@ -2,4 +2,4 @@ AUX wise-api.tex.patch 2166 BLAKE2B 94cb69ddb9b751cf1efd7d4b98520144dc067c0dae83 DIST wise-2.4.0_alpha-patchset.tar.bz2 7244 BLAKE2B 3c921b61e6a30515d790abd8168b5fbc4f8add44f1133cf7d163a98a6935a74ae7c9f79b72874a509bb743aa5b340c92a049ad091380f9cd33b0b9154cca5974 SHA512 ca73f1b03e14cef44d84484c64d06c4856d6ef33b7434de5ac58725cea1d071d875a7b073fc181da33a7490c4f086f674a9a52db4d36e78f4f5b75b28b855cfe DIST wise2.4.0alpha.tar.gz 3296399 BLAKE2B a7fbac022c62606ce865250f4091497e9c86331d2d2050fc4f69614aa5e95313eac3a0fcd49451c724c9b50bc6ac63700cd44828736b7a4d15eff2bc21fc29ec SHA512 a2288d7304e7768328689514a986aeff62a0ca6538ee61177a434fb08065f83ab5db39e0cb9101dd8ae9a91f7d95d05528d7ad23df0c394587717c584bf2341c EBUILD wise-2.4.0_alpha-r1.ebuild 1409 BLAKE2B 317764cdd23ecd59b6eeddcfe3efdab6a358a65a33166b504a98c05f7919864c7670e4c8516b70c98f85957ca4e9aff9700e75f6559e1718663b8535b2df6d89 SHA512 1c4910efb4a82c2ae703220cfdcf4fd9e51a38d23aa29e111559cc604d51185dd584fc33d473eec0fcd80ba177ced507eac230e4c60b589ef12f968a5aefe772 -MISC metadata.xml 267 BLAKE2B 7cf386952842945148119de3263231db4d1046d5f54811f7e303ed8ec4d27cbc1960b99c92daf6f32e5b981c2fb9f50ec666be6193865d6e18541b7427a152a9 SHA512 91ab266d9ab24401bc0fec759c5b6cfcf44a3c5669fc31c7301d79770839bb5dfa0e155d949392ef06176b4a0b2c32b91b1b54b0027f972db61f0a5e54644403 +MISC metadata.xml 268 BLAKE2B a4d67334cdad8626d60e46b677ee1c83f569e5e20b3739a7664bb33be1829f8478af35e135bf734a6ff151b8543ea6c4ecafbf822cee8189f7e7096bd9698711 SHA512 59d3d8213b1a219396b74b6f4188c01e1cb4eb1c63e6792ce1e7fdb8000d1a4625919337ff77288ca7f7e07d9753f481d2381a06f554012633cd678194c980de diff --git a/sci-biology/wise/metadata.xml b/sci-biology/wise/metadata.xml index 959160fe46b1..ccdff086e20b 100644 --- a/sci-biology/wise/metadata.xml +++ b/sci-biology/wise/metadata.xml @@ -1,5 +1,5 @@ <?xml version="1.0" encoding="UTF-8"?> -<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<!DOCTYPE pkgmetadata SYSTEM "https://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <maintainer type="project"> <email>sci-biology@gentoo.org</email> diff --git a/sci-biology/yass/Manifest b/sci-biology/yass/Manifest index 8df2951fa06e..323e43bd2db0 100644 --- a/sci-biology/yass/Manifest +++ b/sci-biology/yass/Manifest @@ -1,4 +1,4 @@ AUX 1.14-as-needed.patch 6046 BLAKE2B d2d7d5f71a4db2780d1485fc9074caac6916428e3b3e28fc9553e0be29b0a58182b2af325b577934b94d831b81d1731226000cad4bdbdc297c6cd3dbf627b94e SHA512 4b9227bb16556084121336b01d6d02257ccf7e35765db53b4a6ba2b0a41946a6b600a9dd05156b763b4b37f18d30d2c9111eeca79a1656f757199ba1cda5b3dd DIST yass-1.14.tar.gz 235530 BLAKE2B 55b7e8e7834f3a76a09e5e509884b391053fe97a7d5aeb3132009c8050014fb6dae92f7b246c85646a872fd5bde7a4b8c3bd0124fb38c7d0f648b85c63d99ad7 SHA512 fdfac6f391848d0bd35829a966721a242697b0832803092bd7ea2116149332642ddf3bf5f095fe707f6edbbb9454efe068852fe6d5cdfe937445d9d32a521fa2 EBUILD yass-1.14-r2.ebuild 663 BLAKE2B 04803df835cd4cfa8ccf32e82c9c639d61f5e7dc8ac03d508ce4246eaa7db5dac055ecae954fe42dc849dead9c784777d3cb1f1d2f19cc9272dacc494729e823 SHA512 ac373f6d89d678ca71d0e84d76965cc2d3eed9ccf51d33c799613bcdb588f5adfc7ca588b823a92ea6bb12c39bb91fca6cdd685af3a8ec943a43192b633246cc -MISC metadata.xml 439 BLAKE2B 0c6f834f103c386ac6e4adbac338c0e82ce8c39b5e6e9d101a3bd38f6b62c440148f9516561350a3ce54725464bb89bef6fad36ddde3aa5a54706260a8c51f80 SHA512 e2f368f4a1b1b46ee31e1308c9a57846b08d9a4958a53caed2f2a9c8f228459cf305e1d07ac4f294bd6eca622094a36be0ec2859f86bd9eecf10070ea832d7af +MISC metadata.xml 440 BLAKE2B 8dbb90197bbabba0844a01d338185dceecf8dc7925cbbe89f14a394df0e2f328aa600f99576a4fe08e71735d9c190e9278d3f71be3cbbb624d3e9e72e27b668c SHA512 d0912b9e3b46bb9315c830fb998173db9db6ce4ded0f2806c3af78749a4e1477eccc8a4200f71bd6de4eeb43c9dd462d44632eeafd58cca7a811751257d4df14 diff --git a/sci-biology/yass/metadata.xml b/sci-biology/yass/metadata.xml index 67dfef524416..1235113d13c6 100644 --- a/sci-biology/yass/metadata.xml +++ b/sci-biology/yass/metadata.xml @@ -1,5 +1,5 @@ <?xml version="1.0" encoding="UTF-8"?> -<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<!DOCTYPE pkgmetadata SYSTEM "https://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <maintainer type="project"> <email>sci-biology@gentoo.org</email> |