gentoo resync : 03.11.2019

6 files changed, 0 insertions, 108 deletions

diff --git a/sci-biology/Manifest.gz b/sci-biology/Manifest.gz
index 7c21cb63f1ea..dd492f9025fa 100644
--- a/sci-biology/Manifest.gz
+++ b/sci-biology/Manifest.gz
diff --git a/sci-biology/goby-cpp/Manifest b/sci-biology/goby-cpp/Manifest
deleted file mode 100644
index c38de79d4ffa..000000000000
--- a/sci-biology/goby-cpp/Manifest
+++ /dev/null
@@ -1,8 +0,0 @@
-DIST goby-cpp-2.0.1-files.tar.bz2 8354 BLAKE2B 0169e1bbcdc27f359cde47df708546dd6af0a68334295b247a6aac9122b7e9b1ee590fe0b57052c642b7e25478f5b118c70bec0c4b4af3694ab0f68c1c9ea73a SHA512 6f0cf466688cdbe9fe646cdff78dd0721fd0b0819c354c63e7c39c45895c319754cdadf23aeb9d544b0b2c68f1168583cb541ec160ba7f567fa0218dbad38e1e
-DIST goby_1.9.7.3-cpp.zip 127215 BLAKE2B 0673c36b503a6daee5fdaaf96fb415277502c0a49e530eb39983d4718f4a1d8eb9a6ff0a3202413c358600aafc2bf73482be12462f798923c13e19a6bcd590b1 SHA512 56bf190224b6f22e0578cea4cc950e52e746655c75ffc13675276787b4d0ced682f891f6ecf7af3cf124b535ac3afc8711b0ecff44d6fd25fe521de7371c3486
-DIST goby_1.9.8.1-cpp.zip 134904 BLAKE2B 800f3bcbe9f721bfb636f514630fb1ceba3a1fe41616f63fc15f9f2a24394ef9be90419ccad0c9bd8b29100eeaea57659ba013042cf4a11b6038fc6dee782619 SHA512 d31cd7f0be19074bfe8da74d9f2510f0e0f15fe6c485bbed8520052468d2cd2f1bc5fcad8b0d6a1586f5acde73db326059f45994ecfbb5fb6c09692d8e155190
-DIST goby_2.0.1-cpp.zip 177718 BLAKE2B 666b50fdc199693f8a4f9b6007f6609e91ab6093b643da88e580c9a3438a150cd7be78d2b5dcdd2fe905263d32ebbac1e0e47dbc637fd5d59f877e7cbdaaeeb2 SHA512 992bd10d5538dec1478820f26151dd311f4de13e7947b49f0b06d6cbdd4b71deeb3aa8a4c6a598fb92fbcb9cbf4ff97bf81205c9389d4a0da4443317e48aea9f
-EBUILD goby-cpp-1.9.7.3.ebuild 555 BLAKE2B 933477f32f153ac20745ec1e0ffd19940d107004c94cbec5bdcb891c848d528858f7c19295bb913b5660725af06eb8502ff7b2452d1ea4da805cd83799b7bbf7 SHA512 9ec312647746b8b59841d9b4d976912d0ae25efe7ecc7cfc592dc2292a2884c663ee7b0d90377f0b0f1273563a5bc95aff10f7a5e40fef81dbae2f6ae4ebeeb4
-EBUILD goby-cpp-1.9.8.1.ebuild 555 BLAKE2B aeee8edbcfba53fdf6c30c645ea811d8516a6f15262d88de6b0f085c6a3db291f2c92f7a219a64a747e0955ecf691a50f30f2499200bde5542b91c24821df870 SHA512 1e1d69c51709724fec05cdcc29bdff3936f3366c811677c48a2f476cbf20476a9e9c7abbf19316f127bb252ed4dde6fc333ac0a28e7b78c29a576e58426d2e52
-EBUILD goby-cpp-2.0.1.ebuild 978 BLAKE2B f98bdc375c83648e89a564c34e55628bc9bfd7ea05a680731462885dd7f64f4e6cdb165fb6cf0d87aa7e3848d7ebb8da2ce773c2bcebf2f64850106a481776e4 SHA512 48792ec10d8b8b529e190bde3dac5ea1b7da52ac84af31cf2a8ada2b570267869e2ad707528a98d1e2b5f231a2323cbd20d01d327d865347114eede2cc3e3d6e
-MISC metadata.xml 267 BLAKE2B 7cf386952842945148119de3263231db4d1046d5f54811f7e303ed8ec4d27cbc1960b99c92daf6f32e5b981c2fb9f50ec666be6193865d6e18541b7427a152a9 SHA512 91ab266d9ab24401bc0fec759c5b6cfcf44a3c5669fc31c7301d79770839bb5dfa0e155d949392ef06176b4a0b2c32b91b1b54b0027f972db61f0a5e54644403
diff --git a/sci-biology/goby-cpp/goby-cpp-1.9.7.3.ebuild b/sci-biology/goby-cpp/goby-cpp-1.9.7.3.ebuild
deleted file mode 100644
index 1d9228d799dc..000000000000
--- a/sci-biology/goby-cpp/goby-cpp-1.9.7.3.ebuild
+++ /dev/null
@@ -1,25 +0,0 @@
-# Copyright 1999-2011 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-
-EAPI=4
-
-inherit autotools
-
-DESCRIPTION="A DNA sequencing data management framework - C/C++ API"
-HOMEPAGE="http://campagnelab.org/software/goby/"
-SRC_URI="http://chagall.med.cornell.edu/goby/releases/archive/release-goby_${PV}/goby_${PV}-cpp.zip"
-
-LICENSE="GPL-3"
-SLOT="0"
-IUSE=""
-KEYWORDS="~amd64 ~x86"
-
-DEPEND=">=dev-libs/protobuf-2.4.1
-	>=dev-libs/libpcre-8.12"
-RDEPEND="${DEPEND}"
-
-S="${WORKDIR}/goby_${PV}/cpp"
-
-src_prepare() {
-	eautoreconf
-}
diff --git a/sci-biology/goby-cpp/goby-cpp-1.9.8.1.ebuild b/sci-biology/goby-cpp/goby-cpp-1.9.8.1.ebuild
deleted file mode 100644
index 5bd75260414e..000000000000
--- a/sci-biology/goby-cpp/goby-cpp-1.9.8.1.ebuild
+++ /dev/null
@@ -1,25 +0,0 @@
-# Copyright 1999-2012 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-
-EAPI=4
-
-inherit autotools
-
-DESCRIPTION="A DNA sequencing data management framework - C/C++ API"
-HOMEPAGE="http://campagnelab.org/software/goby/"
-SRC_URI="http://chagall.med.cornell.edu/goby/releases/archive/release-goby_${PV}/goby_${PV}-cpp.zip"
-
-LICENSE="GPL-3"
-SLOT="0"
-IUSE=""
-KEYWORDS="~amd64 ~x86"
-
-DEPEND=">=dev-libs/protobuf-2.4.1
-	>=dev-libs/libpcre-8.12"
-RDEPEND="${DEPEND}"
-
-S="${WORKDIR}/goby_${PV}/cpp"
-
-src_prepare() {
-	eautoreconf
-}
diff --git a/sci-biology/goby-cpp/goby-cpp-2.0.1.ebuild b/sci-biology/goby-cpp/goby-cpp-2.0.1.ebuild
deleted file mode 100644
index e74dd6ecede3..000000000000
--- a/sci-biology/goby-cpp/goby-cpp-2.0.1.ebuild
+++ /dev/null
@@ -1,42 +0,0 @@
-# Copyright 1999-2017 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-
-EAPI=5
-
-AUTOTOOLS_AUTORECONF=yes
-
-inherit autotools-utils
-
-DESCRIPTION="A DNA sequencing data management framework - C/C++ API"
-HOMEPAGE="http://campagnelab.org/software/goby/"
-SRC_URI="http://chagall.med.cornell.edu/goby/releases/archive/release-goby_${PV}/goby_${PV}-cpp.zip
-	https://dev.gentoo.org/~mgorny/dist/${P}-files.tar.bz2"
-
-LICENSE="GPL-3"
-SLOT="0"
-KEYWORDS="~amd64 ~x86"
-IUSE="static-libs"
-
-DEPEND="
-	>=dev-libs/protobuf-2.4.1
-	>=dev-libs/libpcre-8.12"
-RDEPEND="${DEPEND}"
-
-S="${WORKDIR}/${PV}/cpp"
-
-PATCHES=(
-	"${WORKDIR}"/${P}-files/${P}-underlinking.patch
-)
-
-src_prepare() {
-	sed \
-		-e '/BUILD_TIMESTAMP/s:\(goby/timestamp.h\):$(top_srcdir)/src/\1:g' \
-		-i src/Makefile.am || die
-
-	pushd src/goby > /dev/null || die
-	cp "${WORKDIR}"/${P}-files/*.proto . || die
-	protoc --cpp_out=. *.proto || die
-	popd > /dev/null || die
-
-	autotools-utils_src_prepare
-}
diff --git a/sci-biology/goby-cpp/metadata.xml b/sci-biology/goby-cpp/metadata.xml
deleted file mode 100644
index 959160fe46b1..000000000000
--- a/sci-biology/goby-cpp/metadata.xml
+++ /dev/null
@@ -1,8 +0,0 @@
-<?xml version="1.0" encoding="UTF-8"?>
-<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
-<pkgmetadata>
-  <maintainer type="project">
-    <email>sci-biology@gentoo.org</email>
-    <name>Gentoo Biology Project</name>
-  </maintainer>
-</pkgmetadata>