diff options
| author | V3n3RiX <venerix@koprulu.sector> | 2024-03-08 13:07:48 +0000 |
|---|---|---|
| committer | V3n3RiX <venerix@koprulu.sector> | 2024-03-08 13:07:48 +0000 |
| commit | 7825305c5ddf11fffe24fa30453c4e8468f64305 (patch) | |
| tree | f3c43caefa7210acc3d8fd79ac82f8ade47a8dc9 /sci-biology | |
| parent | dc22a05dc2db2827053483e8cab136b33b339307 (diff) | |
gentoo auto-resync : 08:03:2024 - 13:07:48
Diffstat (limited to 'sci-biology')
| -rw-r--r-- | sci-biology/Manifest.gz | bin | 19317 -> 19323 bytes | |||
| -rw-r--r-- | sci-biology/abyss/Manifest | 2 | ||||
| -rw-r--r-- | sci-biology/abyss/abyss-2.3.4.ebuild | 10 |
3 files changed, 8 insertions, 4 deletions
diff --git a/sci-biology/Manifest.gz b/sci-biology/Manifest.gz Binary files differindex 9dd890d7398e..e479838ad584 100644 --- a/sci-biology/Manifest.gz +++ b/sci-biology/Manifest.gz diff --git a/sci-biology/abyss/Manifest b/sci-biology/abyss/Manifest index 2938800747b8..72af9963d941 100644 --- a/sci-biology/abyss/Manifest +++ b/sci-biology/abyss/Manifest @@ -1,3 +1,3 @@ DIST abyss-2.3.4.tar.gz 3511137 BLAKE2B 2b7449233055d22330f44951f9f6d5ff1a116fa3e19c09c17cd4fa517d2fc055c4f00ccb82c7e09b1b939ac6f7a1caf73cf73c33bd3c8aa9ff11879c227a2aaa SHA512 9d4e418399dd62883b53e831f51a0bd2ba228da73eda6c6459cd729c002eb0487f9613fca1c9bd0f4fbb076eed8a9b952505ee97143ab7dde537c23e4a246cd4 -EBUILD abyss-2.3.4.ebuild 1269 BLAKE2B bf4a1edb477650f3d6650c7ae1cfb0d37132215bf8bb4c395a702c506a0d648386168731ad329875380fd46f1a3ccbe673d3211d1ee854538bbe28dbeb49ecb5 SHA512 26a5fec0fbed0c0fdb0f328b993553ec1ceb7632d2d9ad18736f3099df542a88da0d1996c444d3fdbfe59d1dda55161e7de8ea121a22a1bb80c507656999d39c +EBUILD abyss-2.3.4.ebuild 1351 BLAKE2B dec0e08aa8a05f0561ff84b6e0875b82bd59784631e2f4b6012e67f57ddc7c4f6891fb72707ff20d6908672a76b1eeb296d3185950f7f4fdf95295d97a04cff3 SHA512 9ac5c0829c67e674ac23a70514a5c51576dff5018d54a53e6056826aacd718095c7fd03dbc33c0ad96a22c785c2a4ebaa2b6eff3309c01691331ff0a05007de6 MISC metadata.xml 443 BLAKE2B 5507d404ef996facd3cc1a70253dc2e692bf371d5d47ab5abccb65d6cae5dd1e30432177e709ec370e13f90e760a5628816878c4317053f76b9084ad24a71094 SHA512 3b5b3e543775d0909e107483af930aeb82a255214f5bcfb791f29e6e6835658915be79496c5dffd2eda98219b4d00a2fe287affcf938078ff91f1c84908b0531 diff --git a/sci-biology/abyss/abyss-2.3.4.ebuild b/sci-biology/abyss/abyss-2.3.4.ebuild index c2e1ffd29b32..2c2c14d35bd5 100644 --- a/sci-biology/abyss/abyss-2.3.4.ebuild +++ b/sci-biology/abyss/abyss-2.3.4.ebuild @@ -1,9 +1,9 @@ -# Copyright 1999-2022 Gentoo Authors +# Copyright 1999-2024 Gentoo Authors # Distributed under the terms of the GNU General Public License v2 EAPI=8 -inherit autotools toolchain-funcs +inherit autotools flag-o-matic toolchain-funcs DESCRIPTION="Assembly By Short Sequences - a de novo, parallel, paired-end sequence assembler" HOMEPAGE="https://www.bcgsc.ca/resources/software/abyss/" @@ -44,11 +44,15 @@ pkg_setup() { src_prepare() { default sed -i -e "s/-Werror//" configure.ac || die #365195 - sed -i -e "/dist_pkgdoc_DATA/d" Makefile.am || die eautoreconf } src_configure() { + # -Werror=lto-type-mismatch + # https://bugs.gentoo.org/862252 + # https://github.com/bcgsc/abyss/issues/474 + filter-lto + # disable building haskell tool Misc/samtobreak # unless request by user: bug #534412 use misc-haskell || export ac_cv_prog_ac_ct_GHC= |