summaryrefslogtreecommitdiff
path: root/sci-biology
diff options
context:
space:
mode:
authorV3n3RiX <venerix@koprulu.sector>2023-10-19 21:52:41 +0100
committerV3n3RiX <venerix@koprulu.sector>2023-10-19 21:52:41 +0100
commit67efaff61522aeb024152ab6cddf7c40ffacb530 (patch)
tree294409103a6f391c6c9d317b2dde60cbf1f035e7 /sci-biology
parentf827ced0163cc11d6d35e2d4e2c8a7ab3fd6482a (diff)
gentoo auto-resync : 19:10:2023 - 21:52:41
Diffstat (limited to 'sci-biology')
-rw-r--r--sci-biology/Manifest.gzbin19313 -> 19311 bytes
-rw-r--r--sci-biology/stride/Manifest3
-rw-r--r--sci-biology/stride/stride-20060723.ebuild35
3 files changed, 38 insertions, 0 deletions
diff --git a/sci-biology/Manifest.gz b/sci-biology/Manifest.gz
index c2a144cf18ac..99d7924243fd 100644
--- a/sci-biology/Manifest.gz
+++ b/sci-biology/Manifest.gz
Binary files differ
diff --git a/sci-biology/stride/Manifest b/sci-biology/stride/Manifest
index 9d769b29916d..ddc5fd9d211a 100644
--- a/sci-biology/stride/Manifest
+++ b/sci-biology/stride/Manifest
@@ -1,6 +1,9 @@
AUX stride-20011129-clang16.patch 348 BLAKE2B 22c33a3dbc2c0a85d3ae8aaf1072e47486f06074422fd60cf9357b513888a754e5b1937fb2c42f35bada0814d61f663a71407df0ccb10a2d973ee97fab3741e1 SHA512 9f46a30c4db0c9a19cb00a5911cffc964e6b7b776609930ad4c52703fed511dacafa4bf6c9d19dcea2b302f74a0b4a628c4b76f1d30cfb1411ed4c62b1454c9a
AUX stride-20011129-fix-buildsystem.patch 807 BLAKE2B df077f9234808abe3a9346af6c4a8bde92812cc9f782ad37b75b060166b35686cbcdc2f4b12c26263127dbd3c488660bb2cf70bc553c267cb3e9f70eba68082d SHA512 2afba4707d8371da1fc79c5bfa6f476ac76682d67e52287462eabfcecd394f89a9fe68810045098c48107ed7f33b8c44c566f609c647f71a7918375cfc9dc220
DIST stride-20011129.tar.gz 56441 BLAKE2B 4d4cd3f9f6cef997fff10571aecb70cb21056e88c5130e7dfdafe15a6fb353656d0635b4d65895ef115479a87dcf600b659455d15460344c838543a2e356bfae SHA512 cbd40fce4684728f363520540132fc1a0003126954a145d59aeff48adb20fdaa66520bd12b56ee5d2906e8ea97bf78a225204105b820f7f368aee5e790a6471b
+DIST stride-20030408.tar.gz 318997 BLAKE2B 0a6fbb7da0a18cc9fbc4beb3214488080e5f6b85b93f87a33f3d6c38385da12707ee0eb2a10a86c9f6dd3884bd043e3f7f36c6aac797da7dc4f351fab047a950 SHA512 50d71c053118ca078dd9a4659d9b0f62d1f1101519e01b258a088e229ad2062bec917160c7794f18c96d982992d5571f93508365ff4f6e76438da8183390b498
+DIST stride-20060723-update-r1.patch.xz 5888 BLAKE2B 6f477787004fd962b2faf5f0dd1a497067608eb8fcc5d16e161d918ecff7a6b86184eeb5f97ece4465d7595dd64fd0958a6bcedb76f2b666bdc4d0947e51eda0 SHA512 5ecaa5c262856009e188c00a9cf75765fcd7988ebe3cf0389101a4c281fdbc8d085a024fa78b6c88916528d1158133873ebf38a070a66b7e76f842586646ba2d
DIST stride-20060723-update.patch.bz2 5621 BLAKE2B 266a7371c0963a996430c1f809b46196e8bf179fcf2afb4380f6eccd092c03b29d5b09b8a8438ee7848d0f411920db2e4465ef646c75a406197412f35e880179 SHA512 e06eb68b907615e12dc1a9981be157400e9ffed9391a906cb4eb3ef4067b7027c26cc600298053bfc5d2bbbebbbfefe0e6b18d0e4f6fef2172768e6f95498af1
EBUILD stride-20011129-r1.ebuild 854 BLAKE2B ff439fc25f22523b039c792b8d0af454740467db742945774bad7617aca732c0fd5e3cd88d359aefad58387e36b9f24597ff017d4782beb7fb0ea77b54e9976f SHA512 19460010484839b4051391460a819b64e7703c66f14764b54f16b48cd736dbda25f6142b88d2c18d3717ba523f1930756c616d74570a274c61669bea118418ac
+EBUILD stride-20060723.ebuild 926 BLAKE2B bdb62d70fbbc711d796844601d6a8be8030f6154627292b00ff87410fe9666e527dc3d23647982bc53f1445fd27e4f5134933383f9cc25366ca884ac5b0cb800 SHA512 d7ec38562dd97d5754f5cc0394fd752b0e37fa489cc4c2a7cad4d9ae06db2da70cd99607f36b1ed51fe29b0cb1aca8f81fd41bbfc79714356969d93b36ff3827
MISC metadata.xml 268 BLAKE2B a4d67334cdad8626d60e46b677ee1c83f569e5e20b3739a7664bb33be1829f8478af35e135bf734a6ff151b8543ea6c4ecafbf822cee8189f7e7096bd9698711 SHA512 59d3d8213b1a219396b74b6f4188c01e1cb4eb1c63e6792ce1e7fdb8000d1a4625919337ff77288ca7f7e07d9753f481d2381a06f554012633cd678194c980de
diff --git a/sci-biology/stride/stride-20060723.ebuild b/sci-biology/stride/stride-20060723.ebuild
new file mode 100644
index 000000000000..45c2f457468b
--- /dev/null
+++ b/sci-biology/stride/stride-20060723.ebuild
@@ -0,0 +1,35 @@
+# Copyright 1999-2023 Gentoo Authors
+# Distributed under the terms of the GNU General Public License v2
+
+EAPI=8
+inherit toolchain-funcs
+
+DESCRIPTION="Protein secondary structure assignment from atomic coordinates"
+HOMEPAGE="http://webclu.bio.wzw.tum.de/stride/"
+# Version 20030408 per dates in upstream tarball
+UPSTREAM_VER="20030408"
+SRC_URI="https://webclu.bio.wzw.tum.de/stride/${PN}.tar.gz -> ${PN}-${UPSTREAM_VER}.tar.gz
+ https://dev.gentoo.org/~pacho/${PN}/${PN}-20060723-update-r1.patch.xz"
+
+LICENSE="STRIDE"
+SLOT="0"
+KEYWORDS="amd64 ~ppc ~x86 ~amd64-linux ~x86-linux"
+RESTRICT="mirror bindist"
+
+S="${WORKDIR}"
+PATCHES=(
+ # This patch updates the source to the most recent
+ # version which was kindly provided by the author
+ "${S}"/${P}-update-r1.patch
+
+ "${FILESDIR}"/${PN}-20011129-fix-buildsystem.patch
+ "${FILESDIR}"/${PN}-20011129-clang16.patch
+)
+
+src_configure() {
+ tc-export CC
+}
+
+src_install() {
+ dobin ${PN}
+}