diff options
| author | V3n3RiX <venerix@koprulu.sector> | 2022-09-04 04:20:30 +0100 |
|---|---|---|
| committer | V3n3RiX <venerix@koprulu.sector> | 2022-09-04 04:20:30 +0100 |
| commit | 67717f5ed7e33856e34f632d5f17a5e218401c0a (patch) | |
| tree | 609008d60c8ff9be5d300757865570d31c29ac0d /sci-biology | |
| parent | 71f9cc21aab4168093940b3d2e267444d712bff5 (diff) | |
gentoo auto-resync : 04:09:2022 - 04:20:30
Diffstat (limited to 'sci-biology')
| -rw-r--r-- | sci-biology/Manifest.gz | bin | 19998 -> 20002 bytes | |||
| -rw-r--r-- | sci-biology/augustus/Manifest | 2 | ||||
| -rw-r--r-- | sci-biology/augustus/augustus-3.4.0-r2.ebuild (renamed from sci-biology/augustus/augustus-3.4.0-r1.ebuild) | 19 |
3 files changed, 12 insertions, 9 deletions
diff --git a/sci-biology/Manifest.gz b/sci-biology/Manifest.gz Binary files differindex 2ac57b1b73e0..6608a75e99c1 100644 --- a/sci-biology/Manifest.gz +++ b/sci-biology/Manifest.gz diff --git a/sci-biology/augustus/Manifest b/sci-biology/augustus/Manifest index a3321dccb4f8..68a832441ac2 100644 --- a/sci-biology/augustus/Manifest +++ b/sci-biology/augustus/Manifest @@ -2,5 +2,5 @@ AUX augustus-2.5.5-sane-build.patch 5271 BLAKE2B 1ba799aa4d9611087f1455f334dc356 DIST augustus-3.4.0.tar.gz 221652100 BLAKE2B dfc8c98107f5a955f688f3d2976ca936faf2ef7004095f6b9d7c1902a36ca5d3c9aef59cab1b82b56cd5c2abc7b67195c5030111ed68557d53128814b1bf6bab SHA512 ca1df1016589f55527a883429edd5024cbc32c1b32036c81f9df5e0967a7d194f5b7a82109e924f380627427d9731caa478e63cad8cd804c01521aed76d8c4a6 DIST augustus.2.5.5.tar.gz 70826249 BLAKE2B 3f3f1537c5c614f00298e1835eeb7bbe968987c3e0dee13299e1e26b4abf198d8635a93121b11722d2c90b63ff54cf153c72716d01c3ca033481bb54357b7bcf SHA512 33eb05d5c90200d2fc17026743d3a25e73aa3e217b8546f0bed4c94bcb460597d853377a67896e52e45ead5d736d13ed3b2c91b31fed8216da2920c825e8c20f EBUILD augustus-2.5.5.ebuild 910 BLAKE2B 5cde42582b4873dbaabe4457a4b7b4f5305b928cbfd7afc3c067cbeb3ea042e82faa56810b4f72078d57f7b0ecd4c96eaa30cfde5ef73d67c26fd05d0035d84e SHA512 03103b4d5cec5dfd46971f1a089d0c02d3cc5ecf7647ee5589e8e297b3f60689c2c763b8c8f2137becfa0e11c0e3c7977186c466085c3065f88eaf5a469bcb9c -EBUILD augustus-3.4.0-r1.ebuild 958 BLAKE2B f5ef14e9e3d9f954eb5676365fdc9bc7f7f10d48b3b7e862fef66ca411d372259ad125fdc80f5479854b2e8ffda29520f5ae6c733f6fde7872ef7d0580958ea9 SHA512 d74481f445e88696674edf54ebf6ee765b5bca3ad9346021c39cd7308f8f875b96a9875995d537dd9542a57bac12c729a7e63ee60c78f74d6b83a2e5b86a5468 +EBUILD augustus-3.4.0-r2.ebuild 1031 BLAKE2B 45a1ddd194df245043599abe15d9a104a7857f2592441f6aec1dff942c3d4b145e56204a6a7dbb1e714943797f38a5d13259e674b4ba6585c2c4eab9caee85f4 SHA512 f2740287ddb5de53ac1ba572b35849aa527d341044dd353d83387222d9e2a2f67c85f8e0bd07e2b077227730b241153af2f5d5d8c843d1b7999dc1927a8c62a4 MISC metadata.xml 268 BLAKE2B a4d67334cdad8626d60e46b677ee1c83f569e5e20b3739a7664bb33be1829f8478af35e135bf734a6ff151b8543ea6c4ecafbf822cee8189f7e7096bd9698711 SHA512 59d3d8213b1a219396b74b6f4188c01e1cb4eb1c63e6792ce1e7fdb8000d1a4625919337ff77288ca7f7e07d9753f481d2381a06f554012633cd678194c980de diff --git a/sci-biology/augustus/augustus-3.4.0-r1.ebuild b/sci-biology/augustus/augustus-3.4.0-r2.ebuild index 56c2f49baebc..30b3d7d0a6f8 100644 --- a/sci-biology/augustus/augustus-3.4.0-r1.ebuild +++ b/sci-biology/augustus/augustus-3.4.0-r2.ebuild @@ -5,7 +5,7 @@ EAPI=8 DOCS_BUILDER="doxygen" DOCS_CONFIG_NAME="doxygen.conf" -inherit docs +inherit docs toolchain-funcs DESCRIPTION="Eukaryotic gene predictor" HOMEPAGE="https://bioinf.uni-greifswald.de/augustus/" @@ -18,13 +18,13 @@ KEYWORDS="~amd64 ~x86" RDEPEND=" dev-db/sqlite:3 - dev-db/mysql++ - dev-db/mysql-connector-c - dev-libs/boost:= - sci-biology/bamtools + dev-db/mysql++:= + dev-db/mysql-connector-c:= + dev-libs/boost:=[zlib] + sci-biology/bamtools:= sci-biology/samtools:0 - sci-libs/gsl - sci-libs/htslib + sci-libs/gsl:= + sci-libs/htslib:= sci-libs/suitesparse sci-mathematics/lpsolve sys-libs/zlib @@ -32,7 +32,10 @@ RDEPEND=" DEPEND="${RDEPEND}" src_compile() { - default + tc-export CC CXX + + emake LINK.cc="$(tc-getCXX)" + docs_compile } |