gentoo resync : 22.10.2018

12 files changed, 63 insertions, 126 deletions

diff --git a/sci-biology/Manifest.gz b/sci-biology/Manifest.gz
index 6716c2378851..6ba6bf0411ba 100644
--- a/sci-biology/Manifest.gz
+++ b/sci-biology/Manifest.gz
diff --git a/sci-biology/allpathslg/Manifest b/sci-biology/allpathslg/Manifest
index dab34c2f1993..e53ae3bcab60 100644
--- a/sci-biology/allpathslg/Manifest
+++ b/sci-biology/allpathslg/Manifest
@@ -1,5 +1,5 @@
 AUX allpathslg-52488-gcc7.patch 790 BLAKE2B d3993e840b7b53791b0830fc993553c45c00d5d81881750066327106ad45f13bd0f4dba48c8cc0bdf3655d20ff3cefa659b8d41f582a73376188109860e5f2eb SHA512 bde085541f74278aba8edd1c41dd3a2541a7ce7f3a6647b5f3ed19613545bbfff287463e90e785b4476c677d2456d4c87818730b95941b27744549fcdd62d935
 DIST allpathslg-52488-patchset.tar.bz2 11405 BLAKE2B 7a4c36884ac95a4eb23291720e422ce1ec41d0bea3a0b10582aa1d8154234971eb8d06979a969e65c1ec1eab031d2500a1ec40809019c8b4aa1d1d2e81427dbe SHA512 a1d58c131afeef04a9d7a2520fcd28a853317323fdcab1a253cb2548546bbc559993c74a68a8032a5d0e865ac2c2d53ff6b4c149aade2d1f87a2ab4116ebe4cc
 DIST allpathslg-52488.tar.gz 3121949 BLAKE2B b75904f9e8256a14c97abae45a0cb41718f95d27a4a072b6144bd125abb57682faa180de6a18399ab4fa43988344c436ca1eab8412433353fcc746c432c33031 SHA512 c44ef1a3ed5b343bf096663309cc399e79d65e83175232743cf330fd0d426633bd0d388922fd0c73ac0927d85ea9005549c8e4f7711c79fea7107068510ef30d
-EBUILD allpathslg-52488-r2.ebuild 1016 BLAKE2B e707f2cebafd829c0ccf712a5b72eb10c39663ccfa3f2a8f279200286f609905b3be756d64c42748667e4171aef36435bb9386f8d807db29584bdc74ceee92ab SHA512 106002b58ebd2616d216e61d164102f5eed7204a19d470a30d2f0e6ef685009fa737866c563fccc1980a6577b1f2e30af01756f291701914a67101a96a60bd87
+EBUILD allpathslg-52488-r2.ebuild 1106 BLAKE2B 13dc0cde0d77d22c93883e9bda7d58a1ba7efcb957cbb18aafecf51e87f089b97538106e4fa35e296ecab6a51f43fc7219bcb84fee01c1b19761ff9398515c55 SHA512 1b809a21a660027113199b8e68a21ce578a65ec9edcea8b4bfc4af14e7ff02a3cfa2340415349bd4d8ee72c3e4bdcb18db396c8787632eb23a5ba20f703409bc
 MISC metadata.xml 267 BLAKE2B 7cf386952842945148119de3263231db4d1046d5f54811f7e303ed8ec4d27cbc1960b99c92daf6f32e5b981c2fb9f50ec666be6193865d6e18541b7427a152a9 SHA512 91ab266d9ab24401bc0fec759c5b6cfcf44a3c5669fc31c7301d79770839bb5dfa0e155d949392ef06176b4a0b2c32b91b1b54b0027f972db61f0a5e54644403
diff --git a/sci-biology/allpathslg/allpathslg-52488-r2.ebuild b/sci-biology/allpathslg/allpathslg-52488-r2.ebuild
index 964904d66551..cc9498b65f70 100644
--- a/sci-biology/allpathslg/allpathslg-52488-r2.ebuild
+++ b/sci-biology/allpathslg/allpathslg-52488-r2.ebuild
@@ -1,4 +1,4 @@
-# Copyright 1999-2017 Gentoo Foundation
+# Copyright 1999-2018 Gentoo Authors
 # Distributed under the terms of the GNU General Public License v2
 
 EAPI=6
@@ -39,5 +39,8 @@ pkg_setup() {
 src_prepare() {
 	default
 
+	# Fix building with glibc-2.27, bug #647340
+	sed -i -e 's/-mieee-fp//' configure.ac || die
+
 	eautoreconf
 }
diff --git a/sci-biology/express/Manifest b/sci-biology/express/Manifest
index 655d3b4097ad..4919e7df05e4 100644
--- a/sci-biology/express/Manifest
+++ b/sci-biology/express/Manifest
@@ -1,7 +1,5 @@
 AUX express-1.5.1-buildsystem.patch 1956 BLAKE2B 3cc9bc2a3fb8bc55444ed17984645bf900f253fed8b611395f7de3e744cd1c448af00bb8a83244f344801b9cc9d68c731e8338689bf29463cf2aacb35765d741 SHA512 246788b75a7f40c825cc7bf811de2bd44607b7ccf139d7302480ed7faae441ec95d5a37aec7f04effb1e3e47ed774b08291321cd227b0fa79306969b39e93d54
 AUX express-1.5.1-gcc6.patch 722 BLAKE2B d4c5972d7f3714e33ca85258a32101cd8975527aaf52846b116b75d0cfba94af9173d338d3de0e9051e844f23d6cf2e578340e0986afa9e5ee1ccc29b0781db3 SHA512 bbc7d7980bc88e241a76ad2b8a661ac8232f2cbc1a8cbf526b43905f9cdc52b57aadf8fb6bb03181b51893ac4e9d384ababb6d34582f7e24e6ef2ecc8fbfd73f
-DIST express-0.9.5-src.tgz 766024 BLAKE2B 3818bc9de30a5201d587d3e18feee85f3014b68672eaef32ce0fa5989e0ce2cd7ee8bb8c617db0cde2d061db0f31ba76c49aa03f66be92c40826a6ede35ebca9 SHA512 3a7360ffbe57f4f712b6db38d551d31384d995050a86238d79299edb12f0e7f5dca6f362b7858b5051ea2879af2b3559f78f9780d75ef2ef6fdad7398f781403
 DIST express-1.5.1-src.tgz 931166 BLAKE2B 5eb185e4b001f26f0dd32885b256b9fa48c89f546d67d7f8472cade69dde25375a5fc8efed5f01b615d63b641b674f7034a13f9483eb7967a6fd784a55c8878e SHA512 59cf6511a879311247c65334285ea056d571d4fd950aa6243041fa10075ff0d1ddd2afbcfe12e5f7f3e7cdd22fe37fd7f6b43ed4a8eb28d7a33d72366dc549ee
-EBUILD express-0.9.5-r1.ebuild 877 BLAKE2B 9b942dd82849a8f94b6ae542ec0b52608c0faba49a99b77d423658cd56d2763b09eccb3b0cffc4e58d8a54c11b61581e85ffb045d933111d9ab0b17afa8fa0bc SHA512 6f3277de1bffa5855cf6db9c4733bb75420bc453f0feba464dacf51625d768ac23f3eb2ad3dd5de3389ae820371265085047d12224c08a05ced29d3b7f7cfe1f
-EBUILD express-1.5.1.ebuild 737 BLAKE2B a4d7d15d3e9d553c46c7ebbde640e1ef315c31925de8c93e3532ffc4113d11b2a08031d34edc03703c93c8a82141593f5e5d56228d8c125c8e8c8ee0f2aee248 SHA512 23eb67f560b4b5ad76ecac73bab010a811363ae746c66cef13506e8fd2264f567bdcc283dc58face003bd3f63f077dbaf7d0b55616f50e2f55641a8beb58ceb0
+EBUILD express-1.5.1.ebuild 735 BLAKE2B 581596936624a18170d1421adc64abf379a3a34587344fe6360dfffdf242fa9fae9b4030c37707634a0ae3451ae2eefb37f6145eaf133d8d40eecf0d4f3ed801 SHA512 b2d1d4550dedde0e6242a86a72134ef77fe4c016e725dca902e70cbc78c9e78e06aa484fd1ff5b05b7e574bbf28ed7aec42878eb06d7adde881e8ab5c4743783
 MISC metadata.xml 267 BLAKE2B 7cf386952842945148119de3263231db4d1046d5f54811f7e303ed8ec4d27cbc1960b99c92daf6f32e5b981c2fb9f50ec666be6193865d6e18541b7427a152a9 SHA512 91ab266d9ab24401bc0fec759c5b6cfcf44a3c5669fc31c7301d79770839bb5dfa0e155d949392ef06176b4a0b2c32b91b1b54b0027f972db61f0a5e54644403
diff --git a/sci-biology/express/express-0.9.5-r1.ebuild b/sci-biology/express/express-0.9.5-r1.ebuild
deleted file mode 100644
index 945398a17a8f..000000000000
--- a/sci-biology/express/express-0.9.5-r1.ebuild
+++ /dev/null
@@ -1,35 +0,0 @@
-# Copyright 1999-2014 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-
-EAPI=5
-
-inherit cmake-utils
-
-DESCRIPTION="Streaming RNA-Seq Analysis"
-HOMEPAGE="http://bio.math.berkeley.edu/eXpress/"
-SRC_URI="http://bio.math.berkeley.edu/eXpress/downloads/express-${PV}/express-${PV}-src.tgz"
-
-LICENSE="Artistic"
-SLOT="0"
-KEYWORDS="~amd64 ~x86"
-
-DEPEND="
-	>=dev-libs/boost-1.52.0:=
-	sys-libs/zlib
-	sci-biology/bamtools"
-RDEPEND="${DEPEND}"
-
-S="${WORKDIR}/${P}-src"
-
-CMAKE_USE_DIR="${S}/src"
-
-src_prepare() {
-	sed \
-		-e 's|"${CMAKE_CURRENT_SOURCE_DIR}/../bamtools/lib/libbamtools.a"|bamtools|' \
-		-e '1 a find_package(Boost 1.52 COMPONENTS filesystem program_options system thread)' \
-		-e '1 a find_package(ZLIB)' \
-		-e '/add_executable/ a include_directories("/usr/include/bamtools")' \
-		-i src/CMakeLists.txt || die
-
-	cmake-utils_src_prepare
-}
diff --git a/sci-biology/express/express-1.5.1.ebuild b/sci-biology/express/express-1.5.1.ebuild
index 62e5361f529f..148df8a8ce14 100644
--- a/sci-biology/express/express-1.5.1.ebuild
+++ b/sci-biology/express/express-1.5.1.ebuild
@@ -1,7 +1,7 @@
-# Copyright 1999-2017 Gentoo Foundation
+# Copyright 1999-2018 Gentoo Authors
 # Distributed under the terms of the GNU General Public License v2
 
-EAPI=5
+EAPI=6
 
 inherit cmake-utils
 
@@ -18,8 +18,9 @@ DEPEND="
 	>=dev-libs/boost-1.52.0:=
 	dev-libs/protobuf
 	dev-util/google-perftools
+	sci-biology/bamtools
 	sys-libs/zlib
-	sci-biology/bamtools"
+"
 RDEPEND="${DEPEND}"
 
 S="${WORKDIR}/${P}-src"
diff --git a/sci-biology/fasttree/Manifest b/sci-biology/fasttree/Manifest
index 27717e601bb7..31f22a31dfc1 100644
--- a/sci-biology/fasttree/Manifest
+++ b/sci-biology/fasttree/Manifest
@@ -1,12 +1,7 @@
 AUX CMakeLists.txt 948 BLAKE2B b2a5908a2d24533f474d399b97b8941fbbe392e2b078890bc2e62dbd232912e6bbaec25fbb31592b1015c8c4234178a34ffd9bd4815935d64ea6da3dd21cd474 SHA512 9858800bfce8d256ccb834a06bad5a5230f90f025a9c9b3c9aafe7244d219d66810530f6688e02889cdb67d6a9459d8e26cd1a9fcf2e8825278b31d0e8d51ff3
-AUX fasttree-2.1.7-format-security.patch 783 BLAKE2B 99ed512570ed98d83df2480424a32641e451e88f89e02f6387d7d176ed1a67ec673da21076abfebf9548adcf9bce4689a462a19aa28e076d48d9832b6862b222 SHA512 cabda061de75a1e1b34732946448ee08717f265d7fa8ea413f56eb8bad150ebde9f376a13591167a7786caf17a0d4bb1f8cb7176b74965a47f79b9608d32bcf8
 AUX fasttree-2.1.8-format-security.patch 783 BLAKE2B c400b89a17287817f82a8747082b3bf35d8097941c591923fcff073618fae0423b97fb5bc9a12a199acea0de61d451378beaf0070beb9b20274da81b936f2296 SHA512 9bbf66cddca2b6c202fdeeab4092036852cb1ebe132ebf4d96cba1bea75bb5668dd6ee97d4d020a4b7cf7111bee6d0c3004b0bd74ee4685ef98eeeb5e9a23eb3
-DIST FastTree-2.1.7.c 383551 BLAKE2B 853881cb39355a134133b012ef311702481d7883e8398bc55bcb3d3274f8414d2579a086176c3d2abdb59ecff7bf8cb6223e89b5ea320a3292f0a9915950c6fa SHA512 e88916e6586885e095948e78e6654081f966c78fbf637cfdac01970f5337bfe5616efcd165fb5f9718af0831ff45047b165944f5da9c5931d9725ea6f49cb59e
 DIST FastTree-2.1.8.c 385231 BLAKE2B 6f42025ef69b990e051263ccfa23f95d0cde326798c54d8f702c50127338711898c380d1dbd82ab775667eada047048ba8d68288b030af4984019a5f2c23729f SHA512 39a7d284412a602208c2a5df3d0a9a30fe3a584f7f7788d741fb1463b698692017f47bb23f70046d0873e9c8fd27c84ec23f6ca48adb0594193765ac732e6559
-DIST FastTreeUPGMA-2.1.7.c 95271 BLAKE2B 1de328881f6452b9c7423c9ed381ab2eb31c4f3ee6426481a6b1089c1359627d4cbbfbea868ebeab9538f82e17f45f1bff8ec07c7370e6432bef6bae449798a8 SHA512 4d6a8e2cb28b8ee201091172a3baa59d432420839c6d2244b5fb8230ed9daa626b6bed22cb692393ca3d78b8f2d071fe18fbb4f9bdcdc47ef149c31e3f45546c
 DIST FastTreeUPGMA-2.1.8.c 95271 BLAKE2B 1de328881f6452b9c7423c9ed381ab2eb31c4f3ee6426481a6b1089c1359627d4cbbfbea868ebeab9538f82e17f45f1bff8ec07c7370e6432bef6bae449798a8 SHA512 4d6a8e2cb28b8ee201091172a3baa59d432420839c6d2244b5fb8230ed9daa626b6bed22cb692393ca3d78b8f2d071fe18fbb4f9bdcdc47ef149c31e3f45546c
-DIST MOTreeComparison-2.1.7.tar.gz 13523 BLAKE2B 97638edd945412ff00e3dfcfc89ec6ea52ae8c43531d5cb680d97e9c62fcad80e861f58ec987abcd2282166dd7886101edba4875531bd9d6ac23df242e0dbd5b SHA512 24d2247650d7728942bd1d987b548cefd65a16b433a3810876613e9fd1cff223d4349ee720b3d8d10a73af220c2c9f59a24d77ad34ff009325fe9f22aa35c72b
 DIST MOTreeComparison-2.1.8.tar.gz 13523 BLAKE2B 97638edd945412ff00e3dfcfc89ec6ea52ae8c43531d5cb680d97e9c62fcad80e861f58ec987abcd2282166dd7886101edba4875531bd9d6ac23df242e0dbd5b SHA512 24d2247650d7728942bd1d987b548cefd65a16b433a3810876613e9fd1cff223d4349ee720b3d8d10a73af220c2c9f59a24d77ad34ff009325fe9f22aa35c72b
-EBUILD fasttree-2.1.7.ebuild 1191 BLAKE2B e1b512b81abca6a7b644aff2e26b22573bc68485439143fb1e6fd5bdd77dcb939e2f241c8c91d8b44d51a3b2351fa8a718e6e120a29772d7042ec768c06a7345 SHA512 0f229a132f237f11ac0fdd15083745e71fbb5072fe58afcc1ed1d41050520d3da030e23f57ed50fc3c2460c123b5a4d5665242caf21408b5c032828e8fe2cc46
-EBUILD fasttree-2.1.8.ebuild 1193 BLAKE2B c80c87cb452643db90a1c2da1db1485182f5ecf4db6800cfb848bcaa8d9fc480f1436e842dadfc7f4ace1fd2023820c027c0addfa85e75303584fa29483c3ca6 SHA512 e14223969bdac00b28a2223ce500cf6acf9d2d964f9bb5e55b6ebd22fa453e88a8943d195c655c4f6c246cf1dddac7c6f06aeab7d8f4e35f596192674ca2fa3f
+EBUILD fasttree-2.1.8.ebuild 1170 BLAKE2B afc7e5b975fea59bc720d59732dac792662717aee591f9dc532d532a43ff7a7563f401fce51d0bb9e2d31315b24fe45d098825bdbcbc5264fcfb461cba68ba03 SHA512 798b161e7c9c70e5fd0de3a8018f1e3f95c59b354517ca9539845ec1462d506ab20b4fe629b9666614969a7d05101bf01121c2df34ad9e8a86ff63e136b6f51b
 MISC metadata.xml 410 BLAKE2B 92ee74c67cebb5ac4db5217355e6f01f893387d7fe0da1dd5048207149e385927f05c324d8299682b42bc7ba895e1f42a0ee5d7e9442d03d33ea3511dc704ffd SHA512 6f380e2353b1a0ff33c75cd593d2cf3e12d56c99478e7a5bdb37459b10449ae88065d265820f2a9c6d61d53a295ed1a4e18b8595e23c137c9788c658080caff0
diff --git a/sci-biology/fasttree/fasttree-2.1.7.ebuild b/sci-biology/fasttree/fasttree-2.1.7.ebuild
deleted file mode 100644
index aa5979522691..000000000000
--- a/sci-biology/fasttree/fasttree-2.1.7.ebuild
+++ /dev/null
@@ -1,47 +0,0 @@
-# Copyright 1999-2015 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-
-EAPI=5
-
-inherit cmake-utils
-
-DESCRIPTION="Fast inference of approximately-maximum-likelihood phylogenetic trees"
-HOMEPAGE="http://www.microbesonline.org/fasttree/"
-SRC_URI="
-	http://www.microbesonline.org/fasttree/FastTree-${PV}.c
-	http://www.microbesonline.org/fasttree/FastTreeUPGMA.c -> FastTreeUPGMA-${PV}.c
-	http://www.microbesonline.org/fasttree/MOTreeComparison.tar.gz -> MOTreeComparison-${PV}.tar.gz
-"
-
-LICENSE="GPL-2"
-SLOT="0"
-KEYWORDS="amd64 x86"
-IUSE="double-precision openmp cpu_flags_x86_sse3"
-
-REQUIRED_USE="?? ( double-precision cpu_flags_x86_sse3 )"
-
-DOCS=( README )
-
-PATCHES=( "${FILESDIR}"/${P}-format-security.patch )
-
-src_unpack() {
-	mkdir "${S}" || die
-	cd "${S}" || die
-	unpack ${A}
-	cp "${DISTDIR}"/{FastTreeUPGMA-${PV}.c,FastTree-${PV}.c} . || die
-}
-
-src_prepare() {
-	cp "${FILESDIR}"/CMakeLists.txt . || die
-	cmake-utils_src_prepare
-}
-
-src_configure() {
-	local mycmakeargs=(
-		-DVERSION="${PV}"
-		$(cmake-utils_use_has cpu_flags_x86_sse3 sse3)
-		$(cmake-utils_use_use openmp)
-		$(cmake-utils_use_use double-precision double)
-	)
-	cmake-utils_src_configure
-}
diff --git a/sci-biology/fasttree/fasttree-2.1.8.ebuild b/sci-biology/fasttree/fasttree-2.1.8.ebuild
index 7df71ee4474d..3f9e4ad5f759 100644
--- a/sci-biology/fasttree/fasttree-2.1.8.ebuild
+++ b/sci-biology/fasttree/fasttree-2.1.8.ebuild
@@ -1,7 +1,7 @@
-# Copyright 1999-2015 Gentoo Foundation
+# Copyright 1999-2018 Gentoo Authors
 # Distributed under the terms of the GNU General Public License v2
 
-EAPI=5
+EAPI=6
 
 inherit cmake-utils
 
@@ -39,9 +39,9 @@ src_prepare() {
 src_configure() {
 	local mycmakeargs=(
 		-DVERSION="${PV}"
-		$(cmake-utils_use_has cpu_flags_x86_sse3 sse3)
-		$(cmake-utils_use_use openmp)
-		$(cmake-utils_use_use double-precision double)
+		-DHAS_SSE3=$(usex cpu_flags_x86_sse3)
+		-DUSE_OPENMP=$(usex openmp)
+		-DUSE_DOUBLE=$(usex double-precision)
 	)
 	cmake-utils_src_configure
 }
diff --git a/sci-biology/fasttree/files/fasttree-2.1.7-format-security.patch b/sci-biology/fasttree/files/fasttree-2.1.7-format-security.patch
deleted file mode 100644
index 31dafdad46de..000000000000
--- a/sci-biology/fasttree/files/fasttree-2.1.7-format-security.patch
+++ /dev/null
@@ -1,25 +0,0 @@
- FastTreeUPGMA-2.1.7.c | 4 ++--
- 1 file changed, 2 insertions(+), 2 deletions(-)
-
-diff --git a/FastTreeUPGMA-2.1.7.c b/FastTreeUPGMA-2.1.7.c
-index af76cb1..4065f42 100644
---- a/FastTreeUPGMA-2.1.7.c
-+++ b/FastTreeUPGMA-2.1.7.c
-@@ -535,7 +535,7 @@ int main(int argc, char **argv) {
-       break;
-   }
-   if(iArg < argc-1) {
--    fprintf(stderr, usage);
-+    fprintf(stderr, "%s", usage);
-     exit(1);
-   }
- 
-@@ -953,7 +953,7 @@ void PrintUPGMA(FILE *fp, UPGMA_t *UPGMA, char **names,
-       assert(first >= 0);
-       /* Print the name, or the subtree of duplicate names */
-       if (nameNext[first] == -1) {
--	fprintf(fp, names[uniqueFirst[node]]);
-+	fprintf(fp, "%s", names[uniqueFirst[node]]);
-       } else {
- 	fprintf(fp,"(%s:0.0",names[first]);
- 	int iName = nameNext[first];
diff --git a/sci-biology/rebase/Manifest b/sci-biology/rebase/Manifest
index 7c3b9744f04c..0fecc9b5505d 100644
--- a/sci-biology/rebase/Manifest
+++ b/sci-biology/rebase/Manifest
@@ -4,10 +4,12 @@ DIST rebase-1703.tar.xz 122252304 BLAKE2B 26afca990e300a5c471f55b1a168b1930212a3
 DIST rebase-1704.tar.xz 124351900 BLAKE2B bdbda714cc07f744b56c83b80a1b0f0a724a990b200c615458852910f282761aaf37a312a388ec7fee94a62ead47e01ddca8b205f2ad05d780a299e7547206f7 SHA512 0e4019d41ccbae86b8cb1f6dfa4c34d3fccbe084a330f04f2fdb774186e35c761655e1619d9a90d444ea3bab0910df1b60cf9a249ee31d66a254d28dd6b32cc7
 DIST rebase-1803.tar.xz 152581448 BLAKE2B 7907f0aee9e202f062f5ec4b5e4a112cd0fb3900b3d65dc57ffe4832c5aac088f50c2661f1b9c1bb8b57e7b4f6d453bec2899b460383d06b4e679da13e92aad2 SHA512 ab718e87c33c975bc6a93d3c6be130c9751612b744dc5451bcfde5c10d3d9d68ed4a4d921fff1f48063bfa2e9f3c8a016d4e5e0afa4eb7e4131511767608534b
 DIST rebase-1806.tar.xz 161844712 BLAKE2B 901167b502b85e88eaa9a8886c5ccac8bf1ec16a7736694b90f896bd4d87ae3792d09f6b154118a6063e30b94a5633b37a7811aefc1d39467d0043d887aeb64a SHA512 9c9c0ef89c8f8e43516c052a06395d61c423b53a79553ceccd992bf72872ece44696091c11c816213b93532aac54a476fe87475f4f67baaa87bc50f64e847d48
+DIST rebase-1810.tar.xz 173538148 BLAKE2B 4630d6a2addbb95e70cff73c8f81552545c81be2893dd9f38d19d8bc2fd7ecf4340441498187b654a05012d4dafbd5ad0634e3281f7aed1ee61618308a2325a5 SHA512 641ed61b14970e9804e98abab4e982aeaff378638730964ba162dffacea1c5869e4b1202462f422307d039e1bc6053403c801273f1ca9021c38f29e68a7bfae2
 EBUILD rebase-1701.ebuild 1052 BLAKE2B da1b6a61d2ed830a9421862c5539a3cfd0a438c3068c2a00af55fba5f7b5d4c1a3ac9bb9c4d7fc8b3552b9c6cdb7651479c70fc81136ba02d1bee73693e53f8b SHA512 f5ebc17df3c888caebc01f66e813f0482279bfa89bf5ae67ebf67fc3ca6e762246cd40b35d6713510850a63e7322916b9dd8fb88c841b82c7a1734a562df494b
 EBUILD rebase-1702.ebuild 1091 BLAKE2B 221cc96837849c39c75edcac6179d29b4adbbbceb5a13317993cc23ae8d18c1e24f11cabe9515d99cdd978e75e2c1b635d866ba63aba7f1cb5a0e66a3b22165e SHA512 6b4d6cd81f35284ecee921ca02bf524d4774cc4d9115c50bcc594124d3ef3617db9802e0577a5402ceee0f139a674492e053c532a78cbad3879987b5574c4ebf
 EBUILD rebase-1703.ebuild 1091 BLAKE2B 221cc96837849c39c75edcac6179d29b4adbbbceb5a13317993cc23ae8d18c1e24f11cabe9515d99cdd978e75e2c1b635d866ba63aba7f1cb5a0e66a3b22165e SHA512 6b4d6cd81f35284ecee921ca02bf524d4774cc4d9115c50bcc594124d3ef3617db9802e0577a5402ceee0f139a674492e053c532a78cbad3879987b5574c4ebf
 EBUILD rebase-1704.ebuild 1091 BLAKE2B 221cc96837849c39c75edcac6179d29b4adbbbceb5a13317993cc23ae8d18c1e24f11cabe9515d99cdd978e75e2c1b635d866ba63aba7f1cb5a0e66a3b22165e SHA512 6b4d6cd81f35284ecee921ca02bf524d4774cc4d9115c50bcc594124d3ef3617db9802e0577a5402ceee0f139a674492e053c532a78cbad3879987b5574c4ebf
 EBUILD rebase-1803.ebuild 1091 BLAKE2B ef6b34c8ac22b17109044d8b483d9a7657a9df755f41d4ebb02cbf9756d0514be5c6ebabc67520df121cec563165351b42574d3e1e1300021f58531b45bce2cb SHA512 764e3bbf5537e6753d703dbdd03261ff82da63ad59ffd33a843254343a1677bfc321e322225bc514f949b91dfedc65dbae54ebfb05a73cd2ec70611f70fa954b
 EBUILD rebase-1806.ebuild 1091 BLAKE2B ef6b34c8ac22b17109044d8b483d9a7657a9df755f41d4ebb02cbf9756d0514be5c6ebabc67520df121cec563165351b42574d3e1e1300021f58531b45bce2cb SHA512 764e3bbf5537e6753d703dbdd03261ff82da63ad59ffd33a843254343a1677bfc321e322225bc514f949b91dfedc65dbae54ebfb05a73cd2ec70611f70fa954b
+EBUILD rebase-1810.ebuild 1091 BLAKE2B ef6b34c8ac22b17109044d8b483d9a7657a9df755f41d4ebb02cbf9756d0514be5c6ebabc67520df121cec563165351b42574d3e1e1300021f58531b45bce2cb SHA512 764e3bbf5537e6753d703dbdd03261ff82da63ad59ffd33a843254343a1677bfc321e322225bc514f949b91dfedc65dbae54ebfb05a73cd2ec70611f70fa954b
 MISC metadata.xml 907 BLAKE2B 87023eda8004c64dbd6ec605dcc7cff07f247f5cbf140ee65932c1e80ace99be4f43f2e529b9569a0220e2e60e03e88ef323af1c0dbbbdbee5da0eb0e46ba5f2 SHA512 dfbf6a8c60f75b92b056f6dc5b74adfc588ab0b1edb48ba15a6516254a58b736f101036d8061ed2abd69ca202356f6653bdd578f1a94ae54e5f6df6cc2e5155f
diff --git a/sci-biology/rebase/rebase-1810.ebuild b/sci-biology/rebase/rebase-1810.ebuild
new file mode 100644
index 000000000000..e9944bde30fb
--- /dev/null
+++ b/sci-biology/rebase/rebase-1810.ebuild
@@ -0,0 +1,45 @@
+# Copyright 1999-2018 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+
+EAPI=6
+
+MY_PV=${PV#1}
+
+DESCRIPTION="A restriction enzyme database"
+HOMEPAGE="http://rebase.neb.com"
+SRC_URI="https://dev.gentoo.org/~jlec/distfiles/${P}.tar.xz"
+
+SLOT="0"
+LICENSE="public-domain"
+KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux ~ppc-macos ~sparc-solaris ~x86-solaris"
+IUSE="emboss minimal"
+
+RDEPEND="emboss? ( >=sci-biology/emboss-5.0.0 )"
+DEPEND="${RDEPEND}"
+
+RESTRICT="binchecks strip"
+
+src_compile() {
+	if use emboss; then
+		echo; einfo "Indexing Rebase for usage with EMBOSS."
+		mkdir REBASE || die
+		EMBOSS_DATA="." rebaseextract -auto -infile withrefm.${MY_PV} \
+				-protofile proto.${MY_PV} -equivalences \
+				|| die "Indexing Rebase failed."
+		echo
+	fi
+}
+
+src_install() {
+	if ! use minimal; then
+		insinto /usr/share/${PN}
+		doins withrefm.${MY_PV} proto.${MY_PV}
+	fi
+	newdoc REBASE.DOC README
+	if use emboss; then
+		insinto /usr/share/EMBOSS/data/REBASE
+		doins REBASE/embossre.{enz,ref,sup}
+		insinto /usr/share/EMBOSS/data
+		doins REBASE/embossre.equ
+	fi
+}