diff options
| author | V3n3RiX <venerix@redcorelinux.org> | 2018-04-19 14:14:48 +0100 |
|---|---|---|
| committer | V3n3RiX <venerix@redcorelinux.org> | 2018-04-19 14:14:48 +0100 |
| commit | 5cfef3c94cd7e82136c69a0322f5ba21f7e64632 (patch) | |
| tree | 8f255dfacbacb657e3ac3654d01c1e11e651c066 /sci-biology | |
| parent | 8aebb228036d5e2863b7eaa6e319ab41c1669269 (diff) | |
gentoo resync : 19.04.2018
Diffstat (limited to 'sci-biology')
| -rw-r--r-- | sci-biology/Manifest.gz | bin | 25296 -> 25298 bytes | |||
| -rw-r--r-- | sci-biology/bioruby/Manifest | 1 | ||||
| -rw-r--r-- | sci-biology/bioruby/files/bioruby-1.4.3.0001-fix-tests.patch | 29 |
3 files changed, 0 insertions, 30 deletions
diff --git a/sci-biology/Manifest.gz b/sci-biology/Manifest.gz Binary files differindex 8f33bfdedeee..951a3a289fa6 100644 --- a/sci-biology/Manifest.gz +++ b/sci-biology/Manifest.gz diff --git a/sci-biology/bioruby/Manifest b/sci-biology/bioruby/Manifest index 4d791d308887..5b79f110ce0b 100644 --- a/sci-biology/bioruby/Manifest +++ b/sci-biology/bioruby/Manifest @@ -1,4 +1,3 @@ -AUX bioruby-1.4.3.0001-fix-tests.patch 1082 BLAKE2B cd12d78630371cc453de5abb2d352b329acc98076dbafad393d56dce5c2eaa25e6bb435206bc8d09671fd086af884d2f105fa1b4ffab55cffbc2e2eb6ceba265 SHA512 0a46f8d049521d90993274b52d7bece39464999a4286ac2052a7c8cfb97fe31af7eeadfc8d42c2cbd71f80aca6ac6a778eeb1de7341368ef2ee726444b74752e DIST bio-1.5.1.gem 1445376 BLAKE2B 4de704293ed1c4dee7edc9c86df4ddd35f66eb4433a339fadb58c3f877206e240a8b1dfe6aa8ccd92f0edf9d0f28825cc2b58e33f817fec6bab39e3162f179cf SHA512 822ac6c3d85847193fc1992087abc868e4d1a7cfca82da6ab1830af2927a2a582c3993bc681e129a6aac224ed1cb0b33056d8cc02d3e36d68c9d6a4153c321ca EBUILD bioruby-1.5.1.ebuild 431 BLAKE2B 187d9e6996db7e7324b2702d51620a520d822353b6cae625eef3e1b53ffc415bd5edd851676948deb4ac3ea2bd9a1f6a18a98bba52e739395896b69240fbd813 SHA512 5dea0c9996aca5536dac3ff2ec702a2cd0705321b05304ad6c10e8c6265379e35877e7f1a281ab0e6f6c6c3b506185f044f69700c19e614f34e084657c636ef1 MISC metadata.xml 261 BLAKE2B 3768c926bca545090342a947ba83e706a8954c51b99a5e7b3476ba5198cd326fe1c3b8efb51dfd6be1800682556b8ceea065e388981463ab32f3d687951872f3 SHA512 537da0d3aa2741ebe4442d5dd9b53409decfc9d12ca8e5af8e737c4deb2910c884207e2d441025d19469816100889f04c11038bdffd6a1a15c6217495445090a diff --git a/sci-biology/bioruby/files/bioruby-1.4.3.0001-fix-tests.patch b/sci-biology/bioruby/files/bioruby-1.4.3.0001-fix-tests.patch deleted file mode 100644 index 71c4ca27104a..000000000000 --- a/sci-biology/bioruby/files/bioruby-1.4.3.0001-fix-tests.patch +++ /dev/null @@ -1,29 +0,0 @@ -From edda65b8fb32c2eee6b0652074981c31aa68b0eb Mon Sep 17 00:00:00 2001 -From: Naohisa Goto <ng@bioruby.org> -Date: Fri, 23 Aug 2013 23:51:59 +0900 -Subject: [PATCH] Test bug fix: Read test file with binary mode to avoid - encoding error - - * Test bug fix: Read test file with binary mode to avoid string encoding - error. Thanks to nieder (github.com/nieder) who reports the bug. - (https://github.com/bioruby/bioruby/issues/84) ---- - test/unit/bio/db/test_phyloxml.rb | 2 +- - 1 file changed, 1 insertion(+), 1 deletion(-) - -diff --git a/test/unit/bio/db/test_phyloxml.rb b/test/unit/bio/db/test_phyloxml.rb -index 0744c64..c24278d 100644 ---- a/test/unit/bio/db/test_phyloxml.rb -+++ b/test/unit/bio/db/test_phyloxml.rb -@@ -100,7 +100,7 @@ def test_open_with_block - end - - def test_new -- str = File.read(TestPhyloXMLData.example_xml) -+ str = File.open(TestPhyloXMLData.example_xml, "rb") { |f| f.read } - assert_instance_of(Bio::PhyloXML::Parser, - phyloxml = Bio::PhyloXML::Parser.new(str)) - common_test_next_tree(phyloxml) --- -1.8.4 - |