gentoo resync : 31.12.2018

3 files changed, 47 insertions, 0 deletions

diff --git a/sci-biology/Manifest.gz b/sci-biology/Manifest.gz
index cdb2c8cbf42f..cb16777b6fdf 100644
--- a/sci-biology/Manifest.gz
+++ b/sci-biology/Manifest.gz
diff --git a/sci-biology/rebase/Manifest b/sci-biology/rebase/Manifest
index 0fecc9b5505d..ffd210cfa8a5 100644
--- a/sci-biology/rebase/Manifest
+++ b/sci-biology/rebase/Manifest
@@ -5,6 +5,7 @@ DIST rebase-1704.tar.xz 124351900 BLAKE2B bdbda714cc07f744b56c83b80a1b0f0a724a99
 DIST rebase-1803.tar.xz 152581448 BLAKE2B 7907f0aee9e202f062f5ec4b5e4a112cd0fb3900b3d65dc57ffe4832c5aac088f50c2661f1b9c1bb8b57e7b4f6d453bec2899b460383d06b4e679da13e92aad2 SHA512 ab718e87c33c975bc6a93d3c6be130c9751612b744dc5451bcfde5c10d3d9d68ed4a4d921fff1f48063bfa2e9f3c8a016d4e5e0afa4eb7e4131511767608534b
 DIST rebase-1806.tar.xz 161844712 BLAKE2B 901167b502b85e88eaa9a8886c5ccac8bf1ec16a7736694b90f896bd4d87ae3792d09f6b154118a6063e30b94a5633b37a7811aefc1d39467d0043d887aeb64a SHA512 9c9c0ef89c8f8e43516c052a06395d61c423b53a79553ceccd992bf72872ece44696091c11c816213b93532aac54a476fe87475f4f67baaa87bc50f64e847d48
 DIST rebase-1810.tar.xz 173538148 BLAKE2B 4630d6a2addbb95e70cff73c8f81552545c81be2893dd9f38d19d8bc2fd7ecf4340441498187b654a05012d4dafbd5ad0634e3281f7aed1ee61618308a2325a5 SHA512 641ed61b14970e9804e98abab4e982aeaff378638730964ba162dffacea1c5869e4b1202462f422307d039e1bc6053403c801273f1ca9021c38f29e68a7bfae2
+DIST rebase-1901.tar.xz 182532548 BLAKE2B 5ac8d26ab057bcd21dc9c57abeb226ac70cfabb156b48a51f820789626257be55bb21c9eb2099e6e55b1cfe3691480df0ec9b3f4b18b50ba2712b986c6d057b4 SHA512 1e3553e59c3520190754cb40bb0900e466d9ffd206e6460d3262a7d7d2af8aab0e28f3e60187665362824fa3730211c0e2119016ce5fed49095f9de46c7f25d4
 EBUILD rebase-1701.ebuild 1052 BLAKE2B da1b6a61d2ed830a9421862c5539a3cfd0a438c3068c2a00af55fba5f7b5d4c1a3ac9bb9c4d7fc8b3552b9c6cdb7651479c70fc81136ba02d1bee73693e53f8b SHA512 f5ebc17df3c888caebc01f66e813f0482279bfa89bf5ae67ebf67fc3ca6e762246cd40b35d6713510850a63e7322916b9dd8fb88c841b82c7a1734a562df494b
 EBUILD rebase-1702.ebuild 1091 BLAKE2B 221cc96837849c39c75edcac6179d29b4adbbbceb5a13317993cc23ae8d18c1e24f11cabe9515d99cdd978e75e2c1b635d866ba63aba7f1cb5a0e66a3b22165e SHA512 6b4d6cd81f35284ecee921ca02bf524d4774cc4d9115c50bcc594124d3ef3617db9802e0577a5402ceee0f139a674492e053c532a78cbad3879987b5574c4ebf
 EBUILD rebase-1703.ebuild 1091 BLAKE2B 221cc96837849c39c75edcac6179d29b4adbbbceb5a13317993cc23ae8d18c1e24f11cabe9515d99cdd978e75e2c1b635d866ba63aba7f1cb5a0e66a3b22165e SHA512 6b4d6cd81f35284ecee921ca02bf524d4774cc4d9115c50bcc594124d3ef3617db9802e0577a5402ceee0f139a674492e053c532a78cbad3879987b5574c4ebf
@@ -12,4 +13,5 @@ EBUILD rebase-1704.ebuild 1091 BLAKE2B 221cc96837849c39c75edcac6179d29b4adbbbceb
 EBUILD rebase-1803.ebuild 1091 BLAKE2B ef6b34c8ac22b17109044d8b483d9a7657a9df755f41d4ebb02cbf9756d0514be5c6ebabc67520df121cec563165351b42574d3e1e1300021f58531b45bce2cb SHA512 764e3bbf5537e6753d703dbdd03261ff82da63ad59ffd33a843254343a1677bfc321e322225bc514f949b91dfedc65dbae54ebfb05a73cd2ec70611f70fa954b
 EBUILD rebase-1806.ebuild 1091 BLAKE2B ef6b34c8ac22b17109044d8b483d9a7657a9df755f41d4ebb02cbf9756d0514be5c6ebabc67520df121cec563165351b42574d3e1e1300021f58531b45bce2cb SHA512 764e3bbf5537e6753d703dbdd03261ff82da63ad59ffd33a843254343a1677bfc321e322225bc514f949b91dfedc65dbae54ebfb05a73cd2ec70611f70fa954b
 EBUILD rebase-1810.ebuild 1091 BLAKE2B ef6b34c8ac22b17109044d8b483d9a7657a9df755f41d4ebb02cbf9756d0514be5c6ebabc67520df121cec563165351b42574d3e1e1300021f58531b45bce2cb SHA512 764e3bbf5537e6753d703dbdd03261ff82da63ad59ffd33a843254343a1677bfc321e322225bc514f949b91dfedc65dbae54ebfb05a73cd2ec70611f70fa954b
+EBUILD rebase-1901.ebuild 1088 BLAKE2B 9364896661246fc5d46a524874f95e395d3648239e89d2de265356e4b949ecd275c4d3e808e7bd60af27aa95257c1a92deac21eb1258e87bb318ba25896c1ada SHA512 d0e971497259f6989f4bd73ee9a5719276e200372d943dbc6c9f9eec4de7e8d71ffa413b19b162c7b028332a82b516e572515bc9e9e0e638a39933b6fdd0a831
 MISC metadata.xml 907 BLAKE2B 87023eda8004c64dbd6ec605dcc7cff07f247f5cbf140ee65932c1e80ace99be4f43f2e529b9569a0220e2e60e03e88ef323af1c0dbbbdbee5da0eb0e46ba5f2 SHA512 dfbf6a8c60f75b92b056f6dc5b74adfc588ab0b1edb48ba15a6516254a58b736f101036d8061ed2abd69ca202356f6653bdd578f1a94ae54e5f6df6cc2e5155f
diff --git a/sci-biology/rebase/rebase-1901.ebuild b/sci-biology/rebase/rebase-1901.ebuild
new file mode 100644
index 000000000000..f85a4b1698bb
--- /dev/null
+++ b/sci-biology/rebase/rebase-1901.ebuild
@@ -0,0 +1,45 @@
+# Copyright 1999-2018 Gentoo Authors
+# Distributed under the terms of the GNU General Public License v2
+
+EAPI=6
+
+MY_PV=${PV#1}
+
+DESCRIPTION="A restriction enzyme database"
+HOMEPAGE="http://rebase.neb.com"
+SRC_URI="https://dev.gentoo.org/~jlec/distfiles/${P}.tar.xz"
+
+SLOT="0"
+LICENSE="public-domain"
+KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux ~ppc-macos ~sparc-solaris ~x86-solaris"
+IUSE="emboss minimal"
+
+RDEPEND="emboss? ( >=sci-biology/emboss-5.0.0 )"
+DEPEND="${RDEPEND}"
+
+RESTRICT="binchecks strip"
+
+src_compile() {
+	if use emboss; then
+		echo; einfo "Indexing Rebase for usage with EMBOSS."
+		mkdir REBASE || die
+		EMBOSS_DATA="." rebaseextract -auto -infile withrefm.${MY_PV} \
+				-protofile proto.${MY_PV} -equivalences \
+				|| die "Indexing Rebase failed."
+		echo
+	fi
+}
+
+src_install() {
+	if ! use minimal; then
+		insinto /usr/share/${PN}
+		doins withrefm.${MY_PV} proto.${MY_PV}
+	fi
+	newdoc REBASE.DOC README
+	if use emboss; then
+		insinto /usr/share/EMBOSS/data/REBASE
+		doins REBASE/embossre.{enz,ref,sup}
+		insinto /usr/share/EMBOSS/data
+		doins REBASE/embossre.equ
+	fi
+}