gentoo resync : 05.12.2021

11 files changed, 16 insertions, 16 deletions

diff --git a/sci-biology/ApE/ApE-2.0.7-r1.ebuild b/sci-biology/ApE/ApE-2.0.7-r1.ebuild
index a56f50525205..273e236997ed 100644
--- a/sci-biology/ApE/ApE-2.0.7-r1.ebuild
+++ b/sci-biology/ApE/ApE-2.0.7-r1.ebuild
@@ -1,13 +1,13 @@
-# Copyright 1999-2019 Gentoo Authors
+# Copyright 1999-2021 Gentoo Authors
 # Distributed under the terms of the GNU General Public License v2
 
 EAPI=5
 
-inherit eutils
+inherit desktop
 
 DESCRIPTION="A Plasmid Editor"
-HOMEPAGE="http://www.biology.utah.edu/jorgensen/wayned/ape/"
-SRC_URI="http://www.biology.utah.edu/jorgensen/wayned/ape/Download/Linux/ApE_linux_current.zip -> ${P}.zip"
+HOMEPAGE="https://jorgensen.biology.utah.edu/wayned/ape/"
+SRC_URI="https://jorgensen.biology.utah.edu/wayned/ape/Download/Linux/ApE_linux_current.zip -> ${P}.zip"
 
 LICENSE="ApE"
 SLOT="0"
diff --git a/sci-biology/ApE/Manifest b/sci-biology/ApE/Manifest
index fd0795992443..83055a8fbf43 100644
--- a/sci-biology/ApE/Manifest
+++ b/sci-biology/ApE/Manifest
@@ -1,3 +1,3 @@
 DIST ApE-2.0.7.zip 318454 BLAKE2B 420001d298b8c6b1bc26247446aafe8c3adcf6477ebabc689219c094d46fe5e836d216a493169bac0ccd9c3b669d9421edb3b023a1a39cf74d32a81df09e66d2 SHA512 073e3f96badf4888c10a7c7eb453a3775d5bb9136b0bd836d37d1be784847f887e0c68b37325f430eebfb90c2d94021f10d4e8ede92de89b1ab1ddc1ffdbc254
-EBUILD ApE-2.0.7-r1.ebuild 1175 BLAKE2B 0586453b4d2e63a993d98dad8aacde058bf4dbbe19b1e710965238722bfdc2f3e7982581186423a9a4973be158b5c0e78049706876fb27042dee69b264f38402 SHA512 999af11c86a64da5430f89bc605b8f36bb325c52c4ab7dac1d45e607f06aaaae51fdad477cc5d2c75e83ff0be7d70317286f2b7da7db06bc0c25cda1fad76258
+EBUILD ApE-2.0.7-r1.ebuild 1170 BLAKE2B 9156e3862ffaba5ae4141f0b35f0736fac3f5e31e57a26d4d54c09b283db9303479649a98d4de21d329834cc8baa2b96f0fbeffa29cfb8ad015eac4813d6cb44 SHA512 3bfb046677223de0bc2c3b168dcd78f6e303b15f79b0305addef98ce75060414bc7b4a1f87d8bd08ed00a2a65972b2a5da41e31dd2c9d8ef8b31261e39112127
 MISC metadata.xml 168 BLAKE2B 2e0e000b4c3b6ca04c12903fdbe278415c05a822623c52e9aa95cbbf3d50bcb1246b7edbda7d2f6b559af8950c6374e6e0a69b76319964cfe686bf50b0604a57 SHA512 4dcf45d1809e8390a2d8155c8ebfe0dd610203e392aeab0ccd8a10f42cc8532a4925eff32b35e7a6c35598a4efd288229034ec0732299dbd8cfa0acff705fed3
diff --git a/sci-biology/Manifest.gz b/sci-biology/Manifest.gz
index d128b0b8d2d3..efa8ffe454f9 100644
--- a/sci-biology/Manifest.gz
+++ b/sci-biology/Manifest.gz
diff --git a/sci-biology/clustalw/Manifest b/sci-biology/clustalw/Manifest
index 7972dc360812..f642140dff2e 100644
--- a/sci-biology/clustalw/Manifest
+++ b/sci-biology/clustalw/Manifest
@@ -1,6 +1,6 @@
 AUX 1.83-as-needed.patch 388 BLAKE2B 8da98e05dcdc74ee41ff7a3d75b11590507bc769df0adb181f7c2d0a656f80d15b7363723bd760c359efb666cf962f5cf8c055abc1b7181d37203b0bfe659717 SHA512 1f66a0b539f9101a52b4117d0369294f706a048464d1908ae457def27d33ace0e5c5f9ba507f82a1406bb78ff51896ac6bb76cb03dfe8ff6bbb8ed182dc0f5ea
 DIST clustalw-2.1.tar.gz 350761 BLAKE2B 479acb42ec0b0adee8e04e99132a782c947a1261f48e674c6a11e4f38e44e5709d03f0c864f0cd3cf7eb4faf76a36b6121c3e3d3573c86ee3895971df07f1a58 SHA512 659cfe0121015dd2b84578b1a0a7f016fc944de155686b9bdef31122200a21e792203f3a6ab93a31676a50ffb70858b506ceb7ac27d921189a8381dbe0887921
 DIST clustalw1.83.UNIX.tar.gz 166863 BLAKE2B a3b1eabad8bc736cde4655f13fa8544759b7b5c50ea97fd45ee0be45ac6c361db5ced8ad21622ac2530b57c37c77dfd67657afd2c411acbfb7ff2a3ba014637e SHA512 c0cc9ebf4c8869be819065546b499b547990342c87425fae8f921a141704343f2a518ecfc2b8bfd527061902825fc5befcb2cd080c83ba887390e48338c9dc1a
-EBUILD clustalw-1.83-r4.ebuild 815 BLAKE2B 9a887de5a2a1e96652d260963e13c9aca786b684ee2a9b0c02adba0b2fbfcf0f500f5edabaf4469b2e5ff13b3cf445245d59010b5f8a50e9d830d636f0f76699 SHA512 c884a8fb3029e7834299217c6db91da4f3430c738ba346dc7c3431695c235852c830151452ec534f1c1e59aaff5fbd4bb2d1030ed7779f30a675cbb30d76c218
+EBUILD clustalw-1.83-r4.ebuild 816 BLAKE2B 216e179d5da96bb16b46b64366c54f0482863ebcbb983c19cedadb7d898ed512b9ac679d696f8f74966fc3b24560951674b8eb09c97010c8300785cec01bc887 SHA512 3c013eaabd1f1f951067d6494c03b70913263d71f62fea4669f30dad3d18d52c02b9e8614854350ac8da2b033a7257d708e637e4ac89247a37be492b5d79e87d
 EBUILD clustalw-2.1-r1.ebuild 489 BLAKE2B af8ab15dcb6e2fb20199c7054940eaf53bbbcc72ec1fd7c37fc0aa3f3c28e7a23c640e70eb33956367a12ecc04990a3d6b63ad2b3d8bdf35396debff35dc6da6 SHA512 ad9b200b16d55df114440a44f8d771a406e518a49ca140de106ee38b4e8afc7f0acc7ccb18d81ea90f541637013915c6e793832d26a8b4465925fa101747498c
 MISC metadata.xml 268 BLAKE2B a4d67334cdad8626d60e46b677ee1c83f569e5e20b3739a7664bb33be1829f8478af35e135bf734a6ff151b8543ea6c4ecafbf822cee8189f7e7096bd9698711 SHA512 59d3d8213b1a219396b74b6f4188c01e1cb4eb1c63e6792ce1e7fdb8000d1a4625919337ff77288ca7f7e07d9753f481d2381a06f554012633cd678194c980de
diff --git a/sci-biology/clustalw/clustalw-1.83-r4.ebuild b/sci-biology/clustalw/clustalw-1.83-r4.ebuild
index 144789f4c2a3..076f16300b3a 100644
--- a/sci-biology/clustalw/clustalw-1.83-r4.ebuild
+++ b/sci-biology/clustalw/clustalw-1.83-r4.ebuild
@@ -1,4 +1,4 @@
-# Copyright 1999-2020 Gentoo Authors
+# Copyright 1999-2021 Gentoo Authors
 # Distributed under the terms of the GNU General Public License v2
 
 EAPI=6
@@ -11,7 +11,7 @@ SRC_URI="ftp://ftp.ebi.ac.uk/pub/software/unix/clustalw/${PN}${PV}.UNIX.tar.gz"
 
 LICENSE="clustalw"
 SLOT="1"
-KEYWORDS="amd64 ppc ppc64 sparc x86 ~amd64-linux ~x86-linux ~ppc-macos ~sparc-solaris"
+KEYWORDS="amd64 ~ppc ppc64 sparc x86 ~amd64-linux ~x86-linux ~ppc-macos ~sparc-solaris"
 IUSE=""
 
 S="${WORKDIR}"/${PN}${PV}
diff --git a/sci-biology/muscle/Manifest b/sci-biology/muscle/Manifest
index 16b46d0a21d7..73f0e3b991e2 100644
--- a/sci-biology/muscle/Manifest
+++ b/sci-biology/muscle/Manifest
@@ -1,4 +1,4 @@
 AUX 3.8.31-make.patch 922 BLAKE2B 57f112a4538b1b0a791f9e151e0e27ba8c6af2beefb6ce95f064edd183315e17a09d92a9cd0a368907e2b4a1571463669e5ef83e96758603fa4807780ea98bc0 SHA512 c948991ab4f7b7d6e05ab63df00ea6ac576587e63f808c377cc86f4e3863c7cee207569d7f0a8572a8fcf81f2e23d9dd6b1270447a0028910301d74554ab1fac
 DIST muscle3.8.31_src.tar.gz 515267 BLAKE2B 79a8517f7a14d8ee907104e9035e1284fcabec556544508fd9b712789759448969ce39ecbefcedac62c435dc91e109b3b5b7027120691310ffebda80ca80dd9e SHA512 2baf2aae354ae1e3f529e627be2ace86e89dd15567e1f642a625b63f08ebe3d4bd7315080c7d786d95e3eda8703545ec74af9fe83ad1523d55d00137fb7274ce
-EBUILD muscle-3.8.31.ebuild 580 BLAKE2B d9ccdea4e8e87b89c107d019c7b1ac87ecadf16a92c093e488e7121f6438de4cf003ffe0114402b3b7c90b08e484216908bb01e950f49f014ac748af259dcf58 SHA512 2295bd95b0388e43d2209d37bc48f69a3937bb1a568003f00a66709bea980bc5598f632bf301852149bba24d1d782e86ffca5cc066367f0a3791cd51a6aef3e5
+EBUILD muscle-3.8.31.ebuild 581 BLAKE2B f8b4bfd1f1cec05e80f44198e9f9377bcc3fdfd38f5026eb4a3e965d97d5087106ba91590aad9ffec43feac3062ec94d0c821570f0f887672699e1cf79f73272 SHA512 b2560acd41f7c7ffe90ac235b96ee1ee9dcce6a3a3efc2114925ad5f97fcb2f142e99d29f3f6905993549650aca4e5e3dbf9add0b64d1fd942783c1cf162fc94
 MISC metadata.xml 268 BLAKE2B a4d67334cdad8626d60e46b677ee1c83f569e5e20b3739a7664bb33be1829f8478af35e135bf734a6ff151b8543ea6c4ecafbf822cee8189f7e7096bd9698711 SHA512 59d3d8213b1a219396b74b6f4188c01e1cb4eb1c63e6792ce1e7fdb8000d1a4625919337ff77288ca7f7e07d9753f481d2381a06f554012633cd678194c980de
diff --git a/sci-biology/muscle/muscle-3.8.31.ebuild b/sci-biology/muscle/muscle-3.8.31.ebuild
index 72c9a2c7e178..14781d000e78 100644
--- a/sci-biology/muscle/muscle-3.8.31.ebuild
+++ b/sci-biology/muscle/muscle-3.8.31.ebuild
@@ -1,4 +1,4 @@
-# Copyright 1999-2020 Gentoo Authors
+# Copyright 1999-2021 Gentoo Authors
 # Distributed under the terms of the GNU General Public License v2
 
 EAPI=7
@@ -13,7 +13,7 @@ SRC_URI="http://www.drive5.com/muscle/downloads${PV}/${MY_P}.tar.gz"
 
 LICENSE="public-domain"
 SLOT="0"
-KEYWORDS="amd64 ppc x86"
+KEYWORDS="amd64 ~ppc x86"
 
 RDEPEND="!sci-libs/libmuscle"
 
diff --git a/sci-biology/phyml/Manifest b/sci-biology/phyml/Manifest
index dc8d479c191a..e9c019c5258b 100644
--- a/sci-biology/phyml/Manifest
+++ b/sci-biology/phyml/Manifest
@@ -1,4 +1,4 @@
 AUX phyml-2.4.5-fix-build-system.patch 1735 BLAKE2B 2ba677db3b00cc1ede4701652cd854aa8f92bc545668fae50add726fc5ddcc0694dbac7189216816026433d5c25864c819c77a887a03f6a75f111084611b6689 SHA512 95079d00d4a7373f9b6f9b17b707ae999db38a341e03f96b5f1b023ea4fd76a4027f6a46c6e33ecf7902ab4dcbc22d199b5c0f75a7b0059c90f7c11fbc9146cf
 DIST phyml_v2.4.5.tar.gz 92143 BLAKE2B f95b6b5023cd9b68e92e600edd9ee404bdec717d0b1e748c9e4f4667d732a23469762b847e4aa3c36e5cea7ce1d663ade031ec996cd6449ef1cf2fd55b96b2c8 SHA512 119716290eca0de4da05b0bacbec96139f4c89f6a033b861d1cb2655a620766bd0bea0675c4d7722a31d888652a28bf3544a643f39f11682982ede80dc5928c3
-EBUILD phyml-2.4.5-r3.ebuild 538 BLAKE2B 430bcdab15a89b251245b5ceeb41f55a6cdc115c76cfb9ed5ec4e36eda0a83cdc98dee1b19c883f371235817d8e7bb213618065b2a377eeaf876c5715c06f54d SHA512 72a9907fa91529e696da775b9b99282c3df09e79d01a793601d949a593c05870ee0086c596fded675c1ef485f2d3a8d618447493ce90a786015a85a3848ec7e7
+EBUILD phyml-2.4.5-r3.ebuild 536 BLAKE2B 07640b2fdb404b127af7e8f9bcfab6d7571b9a80405cd793bc0c632bfb5642ae8da116bc983b8f6eb248ce23ac10cf4d3625943c3a943baceeb4b58267866222 SHA512 4294fd9067a16934306108c60a078ce8b9987c43d465203aa0f3a801f1359956bc4ac715863581e2d7af616244860e549c5cc9a6f28bbc3d9f5c4be6e23e6ddf
 MISC metadata.xml 564 BLAKE2B 449bbc55fcabbe9a9fea66017ff48bdf5075345496d6cc9abc6a53966245c00894093b0852eaf1a74f6746db4093d8a3be36a4f9e00b6a245d38716b146247a2 SHA512 89b24d285a76e7826563f631b991ea871c7f4e5c2048ab47cb8d1d028abcf817b5e582bf93d3ea122b019e4b4a49f386f3d95f6103bf39c0979b5f6a3c19b791
diff --git a/sci-biology/phyml/phyml-2.4.5-r3.ebuild b/sci-biology/phyml/phyml-2.4.5-r3.ebuild
index 098771430632..ef9696573577 100644
--- a/sci-biology/phyml/phyml-2.4.5-r3.ebuild
+++ b/sci-biology/phyml/phyml-2.4.5-r3.ebuild
@@ -1,4 +1,4 @@
-# Copyright 1999-2017 Gentoo Foundation
+# Copyright 1999-2021 Gentoo Authors
 # Distributed under the terms of the GNU General Public License v2
 
 EAPI=6
@@ -13,7 +13,7 @@ SRC_URI="http://www.lirmm.fr/~guindon/${MY_P}.tar.gz"
 
 LICENSE="GPL-2"
 SLOT="0"
-KEYWORDS="amd64 ppc x86"
+KEYWORDS="amd64 ~ppc x86"
 IUSE=""
 
 S=${WORKDIR}/${MY_P}
diff --git a/sci-biology/stride/Manifest b/sci-biology/stride/Manifest
index 6cc2d80658b5..42d862210dec 100644
--- a/sci-biology/stride/Manifest
+++ b/sci-biology/stride/Manifest
@@ -1,5 +1,5 @@
 AUX stride-20011129-fix-buildsystem.patch 807 BLAKE2B df077f9234808abe3a9346af6c4a8bde92812cc9f782ad37b75b060166b35686cbcdc2f4b12c26263127dbd3c488660bb2cf70bc553c267cb3e9f70eba68082d SHA512 2afba4707d8371da1fc79c5bfa6f476ac76682d67e52287462eabfcecd394f89a9fe68810045098c48107ed7f33b8c44c566f609c647f71a7918375cfc9dc220
 DIST stride-20011129.tar.gz 56441 BLAKE2B 4d4cd3f9f6cef997fff10571aecb70cb21056e88c5130e7dfdafe15a6fb353656d0635b4d65895ef115479a87dcf600b659455d15460344c838543a2e356bfae SHA512 cbd40fce4684728f363520540132fc1a0003126954a145d59aeff48adb20fdaa66520bd12b56ee5d2906e8ea97bf78a225204105b820f7f368aee5e790a6471b
 DIST stride-20060723-update.patch.bz2 5621 BLAKE2B 266a7371c0963a996430c1f809b46196e8bf179fcf2afb4380f6eccd092c03b29d5b09b8a8438ee7848d0f411920db2e4465ef646c75a406197412f35e880179 SHA512 e06eb68b907615e12dc1a9981be157400e9ffed9391a906cb4eb3ef4067b7027c26cc600298053bfc5d2bbbebbbfefe0e6b18d0e4f6fef2172768e6f95498af1
-EBUILD stride-20011129-r1.ebuild 808 BLAKE2B a8d8b0e99693d446ad7d7c7d3127ef0a3c586f67c93b92bd9625a87169db0234f068a8bc2233342e12fe4ebba8b59233885e5ded0f5f6e18e706b9fea74be486 SHA512 edef456d53d58218454a658e35e4751227dfbccfca810b014a361eb96c2727087e5b831ef32d999b79c4c99680898a063785f3243ea3904a3edba40a2d1fba69
+EBUILD stride-20011129-r1.ebuild 809 BLAKE2B 137cc01d7ad6a7b8da6affe5124aa5d8f82575802c0c250316136f7379de00b931b57cb4d78eef40eabc0dff99bd21dd4a1affd25189c3941989afb296a8fdc6 SHA512 0a66318d4bf72d681cc23183619dad8cfb50546453cc76e7b8d45fb5057fd010a692a8920214c3dacc17f37eb96247416bc5531d33db1c6d3fab1b3302d1576d
 MISC metadata.xml 268 BLAKE2B a4d67334cdad8626d60e46b677ee1c83f569e5e20b3739a7664bb33be1829f8478af35e135bf734a6ff151b8543ea6c4ecafbf822cee8189f7e7096bd9698711 SHA512 59d3d8213b1a219396b74b6f4188c01e1cb4eb1c63e6792ce1e7fdb8000d1a4625919337ff77288ca7f7e07d9753f481d2381a06f554012633cd678194c980de
diff --git a/sci-biology/stride/stride-20011129-r1.ebuild b/sci-biology/stride/stride-20011129-r1.ebuild
index 6211da2e92d7..a8681b7f924e 100644
--- a/sci-biology/stride/stride-20011129-r1.ebuild
+++ b/sci-biology/stride/stride-20011129-r1.ebuild
@@ -13,7 +13,7 @@ SRC_URI="
 
 LICENSE="STRIDE"
 SLOT="0"
-KEYWORDS="amd64 ppc x86 ~amd64-linux ~x86-linux"
+KEYWORDS="amd64 ~ppc x86 ~amd64-linux ~x86-linux"
 RESTRICT="mirror bindist"
 
 S="${WORKDIR}"